Wall clock time and date at job start Tue Mar 31 2020 19:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40365 * 126.64348 * 2 1 4 4 C 1.35131 * 107.11270 * 179.97438 * 3 2 1 5 5 O 1.33936 * 108.76820 * 359.75498 * 4 3 2 6 6 C 1.34915 * 109.38392 * 0.40675 * 5 4 3 7 7 C 1.46656 * 125.98765 * 179.85937 * 6 5 4 8 8 O 1.21698 * 119.99712 * 179.68722 * 7 6 5 9 9 N 1.34773 * 119.99889 * 359.69287 * 7 6 5 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47194 * 34.71875 * 10 9 7 12 12 C 1.52993 * 109.47100 * 154.71955 * 10 9 7 13 13 N 1.46895 * 109.47819 * 304.99878 * 12 10 9 14 14 C 1.46890 * 111.00488 * 180.02562 * 13 12 10 15 15 C 1.50705 * 109.47580 * 179.97438 * 14 13 12 16 16 O 1.21300 * 119.99236 * 0.02562 * 15 14 13 17 17 N 1.34767 * 120.00353 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99863 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00455 * 0.02562 * 18 17 15 20 20 C 1.38957 * 119.99963 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99796 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00068 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46701 * 90.00123 * 22 20 18 24 24 H 1.48494 * 109.46941 * 210.00544 * 22 20 18 25 25 H 1.48503 * 109.46872 * 330.00612 * 22 20 18 26 26 C 1.52997 * 109.46691 * 274.72265 * 10 9 7 27 27 C 1.53000 * 117.49897 * 128.74883 * 26 10 9 28 28 C 1.53006 * 117.50330 * 60.08664 * 26 10 9 29 29 H 1.08996 * 109.47211 * 270.01950 * 1 2 3 30 30 H 1.08995 * 109.47264 * 30.02532 * 1 2 3 31 31 H 1.09002 * 109.46802 * 150.02550 * 1 2 3 32 32 H 1.07995 * 126.44261 * 359.97438 * 3 2 1 33 33 H 1.08001 * 125.61453 * 180.02562 * 4 3 2 34 34 H 0.97005 * 120.00161 * 359.71983 * 9 7 6 35 35 H 1.09002 * 109.47378 * 65.00377 * 12 10 9 36 36 H 1.09004 * 109.46895 * 184.99596 * 12 10 9 37 37 H 1.00909 * 110.99812 * 56.04187 * 13 12 10 38 38 H 1.08996 * 109.47333 * 299.99866 * 14 13 12 39 39 H 1.08997 * 109.47417 * 60.00044 * 14 13 12 40 40 H 0.96998 * 120.00558 * 0.02562 * 17 15 14 41 41 H 0.96997 * 119.99839 * 179.97438 * 21 20 18 42 42 H 1.09000 * 115.55214 * 274.41010 * 26 10 9 43 43 H 1.09000 * 117.50268 * 359.97438 * 27 26 10 44 44 H 1.09007 * 117.50040 * 145.01782 * 27 26 10 45 45 H 1.08994 * 117.49645 * 214.98137 * 28 26 10 46 46 H 1.09001 * 117.49573 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0064 6 6 2.3220 -1.0956 0.0005 7 6 1.8843 -2.4953 0.0011 8 8 0.6968 -2.7614 0.0012 9 7 2.7972 -3.4868 0.0017 10 6 2.3599 -4.8851 0.0017 11 1 1.4456 -4.9799 -0.5840 12 6 3.4529 -5.7612 -0.6136 13 7 3.7929 -5.2539 -1.9496 14 6 4.8412 -6.0729 -2.5726 15 6 5.1623 -5.5237 -3.9388 16 8 4.5758 -4.5459 -4.3525 17 7 6.1017 -6.1184 -4.7004 18 6 6.3941 -5.6184 -5.9431 19 1 5.8720 -4.7478 -6.3115 20 6 7.3631 -6.2313 -6.7281 21 7 7.9988 -7.2904 -6.2797 22 14 7.7611 -5.5505 -8.4216 23 1 8.8458 -4.5427 -8.3074 24 1 8.2040 -6.6564 -9.3080 25 1 6.5497 -4.9111 -8.9952 26 6 2.0937 -5.3360 1.4393 27 6 0.7475 -6.0008 1.7333 28 6 1.0246 -4.5798 2.2305 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 2.0306 2.1595 -0.0004 33 1 4.5046 1.2917 0.0011 34 1 3.7437 -3.2746 -0.0024 35 1 4.3388 -5.7361 0.0209 36 1 3.0933 -6.7870 -0.6951 37 1 4.0677 -4.2839 -1.9089 38 1 5.7368 -6.0504 -1.9519 39 1 4.4909 -7.1006 -2.6678 40 1 6.5710 -6.9002 -4.3695 41 1 8.6750 -7.7184 -6.8279 42 1 2.9638 -5.6976 1.9874 43 1 0.0512 -6.1166 0.9027 44 1 0.7318 -6.7994 2.4751 45 1 1.1912 -4.4441 3.2991 46 1 0.5111 -3.7607 1.7270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498728441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:25 Heat of formation + Delta-G solvation = -30.316165 kcal Electronic energy + Delta-G solvation = -28592.051054 eV Core-core repulsion = 24484.282713 eV Total energy + Delta-G solvation = -4107.768342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.86524 -40.07723 -38.31229 -37.52315 -35.69007 -34.46925 -33.95446 -33.49776 -31.24530 -30.79010 -29.52814 -27.66105 -26.28856 -24.20068 -23.35695 -22.41071 -22.11627 -21.55899 -20.45732 -20.16914 -19.26844 -18.33208 -17.86783 -16.68196 -16.54188 -16.34350 -15.96946 -15.65617 -15.34326 -14.96606 -14.57318 -14.35347 -14.26996 -13.79327 -13.71042 -13.47454 -13.25802 -13.20320 -13.18259 -12.72102 -12.55411 -12.04088 -11.95410 -11.90408 -11.76918 -11.52435 -11.49275 -11.42333 -11.03738 -10.51308 -10.39757 -10.35128 -10.22021 -10.08159 -9.89380 -9.51451 -9.21681 -8.73859 -8.47891 -8.10208 -7.96677 -6.42346 -3.83066 0.90911 2.15477 2.52871 3.01214 3.05571 3.17432 3.26161 3.32511 3.78091 3.89886 4.01198 4.23669 4.48859 4.58808 4.69553 4.72182 4.80168 4.93976 5.02254 5.04994 5.22667 5.24060 5.28017 5.33723 5.37163 5.55151 5.57066 5.58584 5.60041 5.71553 5.79120 5.85030 5.88419 5.95080 5.96308 6.06883 6.13296 6.24633 6.27094 6.35482 6.66875 7.12774 7.33764 7.54850 7.57804 7.99231 8.05749 8.60720 9.17470 9.53619 10.05197 10.75442 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.002689 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.382022 B =10411.713870 C =12259.708075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.088 4.088 3 C -0.227 4.227 4 C -0.002 4.002 5 O -0.162 6.162 6 C -0.084 4.084 7 C 0.612 3.388 8 O -0.517 6.517 9 N -0.708 5.708 10 C 0.179 3.821 11 H 0.102 0.898 12 C 0.054 3.946 13 N -0.667 5.667 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 C -0.171 4.171 27 C -0.167 4.167 28 C -0.182 4.182 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.210 0.790 34 H 0.402 0.598 35 H 0.033 0.967 36 H 0.091 0.909 37 H 0.348 0.652 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 9.139 19.515 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.247 4.247 4 C -0.072 4.072 5 O -0.058 6.058 6 C -0.136 4.136 7 C 0.399 3.601 8 O -0.395 6.395 9 N -0.358 5.358 10 C 0.075 3.925 11 H 0.120 0.880 12 C -0.076 4.076 13 N -0.301 5.301 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.191 4.191 27 C -0.205 4.205 28 C -0.219 4.219 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.173 0.827 33 H 0.226 0.774 34 H 0.237 0.763 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.168 0.832 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.571 8.912 18.805 23.341 hybrid contribution 2.030 0.376 -0.121 2.068 sum -8.541 9.287 18.684 22.545 Atomic orbital electron populations 1.20424 0.88229 1.03760 1.02686 1.20638 0.97666 0.90996 0.99765 1.21740 0.92472 1.00154 1.10288 1.24368 0.99992 0.80615 1.02196 1.84070 1.28339 1.22733 1.70620 1.21867 0.81546 0.94851 1.15342 1.16400 0.85753 0.81707 0.76234 1.90773 1.15709 1.82214 1.50822 1.45878 1.09752 1.06053 1.74112 1.20656 0.99441 0.78928 0.93475 0.87980 1.22237 0.96429 0.99436 0.89475 1.60000 1.44223 1.06969 1.18873 1.21687 0.93044 0.98366 0.95122 1.19798 0.83735 0.86906 0.87040 1.90538 1.53647 1.28447 1.73959 1.41853 1.34046 1.28324 1.15786 1.19707 1.19003 1.12552 0.91603 0.87936 1.25262 0.96441 0.96050 1.00178 1.69611 1.25758 1.20390 1.38602 0.85859 0.78897 0.78221 0.81335 1.20432 1.20902 1.19373 1.22653 0.93758 1.05997 0.96705 1.22936 0.98012 0.95989 1.03544 1.23261 1.02528 0.96598 0.99517 0.90957 0.91542 0.89323 0.82737 0.77375 0.76325 0.94851 0.89100 0.83207 0.93809 0.89386 0.77462 0.91873 0.87787 0.88434 0.88945 0.89599 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.82 36.01 0.35 -0.62 16 2 C -0.09 -1.02 6.20 -104.43 -0.65 -1.67 16 3 C -0.23 -2.13 10.83 -39.89 -0.43 -2.56 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.88 10.40 4.98 0.05 -1.83 16 6 C -0.08 -1.08 7.13 -36.80 -0.26 -1.34 16 7 C 0.61 8.23 7.12 -12.87 -0.09 8.14 16 8 O -0.52 -7.74 11.79 5.19 0.06 -7.68 16 9 N -0.71 -8.40 4.33 -55.12 -0.24 -8.63 16 10 C 0.18 2.07 2.58 -67.93 -0.18 1.90 16 11 H 0.10 1.41 7.33 -51.93 -0.38 1.03 16 12 C 0.05 0.64 5.28 -3.83 -0.02 0.62 16 13 N -0.67 -10.67 6.12 -115.07 -0.70 -11.38 16 14 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 15 C 0.44 10.42 7.82 -10.99 -0.09 10.33 16 16 O -0.58 -16.00 15.78 5.54 0.09 -15.91 16 17 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 21 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 22 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.17 -1.70 5.36 -90.62 -0.49 -2.18 16 27 C -0.17 -1.58 10.18 -26.69 -0.27 -1.85 16 28 C -0.18 -1.90 9.74 -26.69 -0.26 -2.16 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 1.07 6.44 -51.93 -0.33 0.73 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.21 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.40 4.34 7.91 -40.82 -0.32 4.02 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.35 5.82 7.28 -39.29 -0.29 5.53 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.10 0.92 8.11 -51.93 -0.42 0.50 16 43 H 0.10 0.97 8.05 -51.93 -0.42 0.56 16 44 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.12 1.46 5.04 -51.93 -0.26 1.20 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -33.32 387.87 -8.03 -41.35 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -6.49 Total: 18.54 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.29 Total: 1.77 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.28 Total: -58.19 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.20 Total: -25.42 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.32 -8.03 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498728441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.039 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds