Wall clock time and date at job start Tue Mar 31 2020 19:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35137 * 125.61292 * 2 1 4 4 C 1.40366 * 107.11075 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.64357 * 180.02562 * 4 3 2 6 6 C 1.36535 * 106.71087 * 359.97438 * 4 3 2 7 7 C 1.46663 * 125.98961 * 179.97438 * 6 4 3 8 8 O 1.21696 * 119.99651 * 6.06242 * 7 6 4 9 9 N 1.34773 * 120.00319 * 186.06163 * 7 6 4 10 10 C 1.46501 * 120.00056 * 356.17275 * 9 7 6 11 11 C 1.46497 * 120.00424 * 176.17244 * 9 7 6 12 12 C 1.53509 * 114.17316 * 240.00301 * 11 9 7 13 13 N 1.47477 * 87.93090 * 220.32591 * 12 11 9 14 14 C 1.46900 * 111.00125 * 138.70193 * 13 12 11 15 15 C 1.50696 * 109.47580 * 169.99792 * 14 13 12 16 16 O 1.21292 * 119.99987 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00356 * 179.72398 * 15 14 13 18 18 C 1.37097 * 119.99999 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99898 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99792 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99549 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99964 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46962 * 89.99760 * 22 20 18 24 24 H 1.48494 * 109.46923 * 209.99796 * 22 20 18 25 25 H 1.48504 * 109.47208 * 329.99714 * 22 20 18 26 26 C 1.47483 * 87.83825 * 27.00861 * 13 12 11 27 27 O 1.33930 * 125.61715 * 180.32063 * 2 1 3 28 28 H 1.09008 * 109.47011 * 90.00200 * 1 2 3 29 29 H 1.09005 * 109.47141 * 209.99791 * 1 2 3 30 30 H 1.09004 * 109.47405 * 330.00062 * 1 2 3 31 31 H 1.07996 * 126.44375 * 0.03621 * 3 2 1 32 32 H 1.09001 * 109.47281 * 269.97631 * 5 4 3 33 33 H 1.09008 * 109.47416 * 29.97496 * 5 4 3 34 34 H 1.08998 * 109.47531 * 149.97414 * 5 4 3 35 35 H 1.09005 * 109.47536 * 275.69294 * 10 9 7 36 36 H 1.09008 * 109.47068 * 35.68668 * 10 9 7 37 37 H 1.08998 * 109.47321 * 155.68745 * 10 9 7 38 38 H 1.08997 * 113.25058 * 12.95244 * 11 9 7 39 39 H 1.09000 * 113.48065 * 105.55847 * 12 11 9 40 40 H 1.09006 * 113.53066 * 335.10220 * 12 11 9 41 41 H 1.09009 * 109.46751 * 49.99850 * 14 13 12 42 42 H 1.09001 * 109.47233 * 290.00192 * 14 13 12 43 43 H 0.97000 * 119.99783 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99488 * 180.02562 * 21 20 18 45 45 H 1.08999 * 113.47319 * 87.75331 * 26 13 12 46 46 H 1.09000 * 113.47485 * 218.22020 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8616 1.5144 -0.0003 6 6 3.5823 -0.7115 -0.0004 7 6 4.7415 -1.6100 -0.0013 8 8 5.8646 -1.1544 0.1088 9 7 4.5630 -2.9402 -0.1242 10 6 3.2084 -3.4962 -0.1724 11 6 5.7234 -3.8303 -0.2095 12 6 5.7911 -4.6526 -1.5040 13 7 6.2391 -5.7979 -0.6900 14 6 5.5949 -7.0419 -1.1318 15 6 6.2506 -8.2162 -0.4521 16 8 7.1651 -8.0347 0.3237 17 7 5.8177 -9.4678 -0.7025 18 6 6.4147 -10.5360 -0.0845 19 1 7.2316 -10.3747 0.6032 20 6 5.9680 -11.8264 -0.3422 21 7 6.5399 -12.8503 0.2506 22 14 4.5545 -12.1053 -1.5312 23 1 5.0907 -12.2832 -2.9045 24 1 3.8043 -13.3228 -1.1312 25 1 3.6450 -10.9318 -1.5030 26 6 5.5133 -5.2018 0.4472 27 8 2.2870 -1.0887 -0.0061 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9612 2.1261 0.0005 32 1 5.1598 1.7224 -1.0279 33 1 4.6512 2.4523 0.5139 34 1 5.6684 0.9916 0.5134 35 1 2.8360 -3.6346 0.8426 36 1 2.5531 -2.8102 -0.7094 37 1 3.2281 -4.4571 -0.6865 38 1 6.6605 -3.3425 0.0588 39 1 6.5457 -4.2969 -2.2056 40 1 4.8192 -4.8069 -1.9729 41 1 5.7005 -7.1419 -2.2122 42 1 4.5368 -7.0157 -0.8712 43 1 5.0842 -9.6127 -1.3204 44 1 6.2283 -13.7510 0.0704 45 1 4.4668 -5.5022 0.4998 46 1 6.0325 -5.3116 1.3993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499649214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:39 Heat of formation + Delta-G solvation = 3.387588 kcal Electronic energy + Delta-G solvation = -28544.153636 eV Core-core repulsion = 24437.846799 eV Total energy + Delta-G solvation = -4106.306837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.14360 -40.87708 -39.14687 -37.91688 -35.54949 -34.26616 -33.91972 -32.85071 -31.68703 -30.38131 -28.36458 -27.78588 -27.30061 -26.01860 -25.45369 -23.65951 -21.88738 -21.68316 -19.81508 -19.53287 -19.29235 -18.40460 -17.81423 -17.03634 -16.92389 -16.15496 -15.80571 -15.74328 -15.02905 -14.93967 -14.75008 -14.37413 -14.04649 -13.76799 -13.69419 -13.44707 -13.36705 -13.31319 -13.25022 -13.12161 -12.87155 -12.73126 -12.70951 -12.44551 -12.19163 -12.17847 -11.97603 -11.70949 -11.21504 -10.99780 -10.82139 -10.60605 -10.33592 -9.99884 -9.97226 -9.56222 -9.04091 -8.95863 -8.69075 -8.35606 -8.17270 -6.30353 -3.81711 0.70164 1.93024 2.19215 2.68663 2.85113 3.00605 3.05816 3.13946 3.73442 3.93327 4.08024 4.10204 4.29953 4.35675 4.42595 4.62182 4.74441 4.75916 4.82623 4.91298 4.99504 5.06918 5.11604 5.17773 5.20792 5.22468 5.25787 5.35946 5.43101 5.45747 5.47416 5.55702 5.65399 5.75903 5.77350 5.85145 5.90712 5.95060 6.10298 6.19946 6.35782 6.55042 6.94792 7.04463 7.58544 7.75201 8.14990 8.61095 8.96319 9.42990 9.84699 10.82933 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.002160 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.961409 B =12961.343367 C =13891.998193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.016 3.984 3 C -0.223 4.223 4 C -0.081 4.081 5 C -0.098 4.098 6 C -0.087 4.087 7 C 0.605 3.395 8 O -0.515 6.515 9 N -0.596 5.596 10 C 0.070 3.930 11 C 0.118 3.882 12 C -0.018 4.018 13 N -0.432 5.432 14 C 0.008 3.992 15 C 0.455 3.545 16 O -0.554 6.554 17 N -0.594 5.594 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.040 3.960 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.271 1.271 26 C -0.005 4.005 27 O -0.156 6.156 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.369 0.631 44 H 0.273 0.727 45 H 0.074 0.926 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 28.067 -4.379 32.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 C -0.242 4.242 4 C -0.084 4.084 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.394 3.606 8 O -0.393 6.393 9 N -0.328 5.328 10 C -0.073 4.073 11 C 0.015 3.985 12 C -0.149 4.149 13 N -0.154 5.154 14 C -0.124 4.124 15 C 0.240 3.760 16 O -0.435 6.435 17 N -0.234 5.234 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.163 4.163 21 N -0.522 5.522 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.135 4.135 27 O -0.053 6.053 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.172 0.828 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.155 0.845 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.415 27.643 -3.705 31.395 hybrid contribution -2.281 -0.394 -1.117 2.570 sum -16.695 27.249 -4.822 32.319 Atomic orbital electron populations 1.20423 0.84588 1.04559 1.03961 1.22877 0.94390 0.84568 1.01825 1.21474 0.91844 0.99793 1.11106 1.20622 0.96407 0.92152 0.99171 1.20465 0.94000 0.98024 1.02932 1.21738 0.81885 0.93982 1.16218 1.16638 0.86121 0.81081 0.76798 1.90848 1.22487 1.75464 1.50495 1.47707 1.07635 1.05675 1.71747 1.22042 0.82204 1.00249 1.02780 1.22882 0.90033 0.88764 0.96861 1.24419 1.00701 0.92344 0.97397 1.68791 1.43848 0.99222 1.03577 1.22538 0.96764 0.92075 1.01029 1.19525 0.86858 0.83142 0.86452 1.90577 1.30651 1.84540 1.37699 1.42213 1.32987 1.06091 1.42116 1.19427 1.16668 0.83259 1.23854 0.86287 1.25040 0.98105 0.95234 0.97885 1.69624 1.41335 0.98882 1.42377 0.86665 0.82348 0.78555 0.81742 1.19630 1.20206 1.19630 1.24388 0.98475 0.91958 0.98696 1.84242 1.15949 1.33901 1.71240 0.89572 0.90079 0.88982 0.82829 0.90806 0.91420 0.89194 0.91872 0.89651 0.90517 0.84504 0.88788 0.91153 0.89061 0.92213 0.79827 0.91643 0.90837 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.41 36.01 0.37 0.10 16 2 C 0.02 0.11 7.31 -35.41 -0.26 -0.14 16 3 C -0.22 -1.75 10.73 -39.88 -0.43 -2.18 16 4 C -0.08 -0.81 6.20 -104.44 -0.65 -1.46 16 5 C -0.10 -0.88 9.88 36.00 0.36 -0.52 16 6 C -0.09 -0.97 6.78 -36.80 -0.25 -1.22 16 7 C 0.60 7.66 7.64 -12.86 -0.10 7.57 16 8 O -0.52 -7.72 14.22 5.19 0.07 -7.65 16 9 N -0.60 -6.71 3.11 -175.17 -0.55 -7.25 16 10 C 0.07 0.60 8.47 59.85 0.51 1.11 16 11 C 0.12 1.47 4.56 -67.72 -0.31 1.16 16 12 C -0.02 -0.22 7.23 -7.54 -0.05 -0.28 16 13 N -0.43 -6.91 5.82 -246.09 -1.43 -8.35 16 14 C 0.01 0.14 5.30 -4.98 -0.03 0.11 16 15 C 0.46 10.47 7.85 -10.99 -0.09 10.38 16 16 O -0.55 -15.29 16.01 5.55 0.09 -15.21 16 17 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 18 C -0.30 -8.64 10.16 -14.93 -0.15 -8.80 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.04 1.10 5.50 -17.46 -0.10 1.01 16 21 N -0.88 -25.90 13.96 55.50 0.77 -25.12 16 22 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 26 C -0.01 -0.08 7.11 -7.54 -0.05 -0.13 16 27 O -0.16 -1.46 7.25 4.98 0.04 -1.43 16 28 H 0.09 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 34 H 0.09 0.97 6.34 -51.93 -0.33 0.64 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.69 5.31 -51.92 -0.28 0.41 16 37 H 0.08 0.59 5.97 -51.93 -0.31 0.28 16 38 H 0.14 1.89 7.26 -51.93 -0.38 1.51 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.72 6.82 -51.93 -0.35 0.36 16 41 H 0.09 1.31 8.08 -51.92 -0.42 0.89 16 42 H 0.06 0.82 7.30 -51.93 -0.38 0.45 16 43 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 0.90 5.71 -51.93 -0.30 0.60 16 46 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -35.73 376.50 -7.66 -43.39 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.34 Total: 8.89 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.22 Total: 6.71 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -1.26 Total: -54.99 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.20 Total: -24.28 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.73 -7.66 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499649214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.774 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds