Wall clock time and date at job start Tue Mar 31 2020 19:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35137 * 125.61292 * 2 1 4 4 C 1.40366 * 107.11075 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.64357 * 180.02562 * 4 3 2 6 6 C 1.36535 * 106.71087 * 359.97438 * 4 3 2 7 7 C 1.46663 * 125.98961 * 179.97438 * 6 4 3 8 8 O 1.21696 * 119.99651 * 6.06242 * 7 6 4 9 9 N 1.34773 * 120.00319 * 186.06163 * 7 6 4 10 10 C 1.46501 * 120.00056 * 356.17275 * 9 7 6 11 11 C 1.46497 * 120.00424 * 176.17244 * 9 7 6 12 12 C 1.53509 * 114.17316 * 240.00301 * 11 9 7 13 13 N 1.47477 * 87.93090 * 220.32591 * 12 11 9 14 14 C 1.46900 * 111.00125 * 138.70193 * 13 12 11 15 15 C 1.50696 * 109.47580 * 169.99792 * 14 13 12 16 16 O 1.21292 * 119.99987 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00356 * 179.72398 * 15 14 13 18 18 C 1.37097 * 119.99999 * 179.97438 * 17 15 14 19 19 H 1.07994 * 119.99898 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99792 * 179.97438 * 18 17 15 21 21 N 1.31413 * 119.99549 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99964 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46962 * 89.99760 * 22 20 18 24 24 H 1.48494 * 109.46923 * 209.99796 * 22 20 18 25 25 H 1.48504 * 109.47208 * 329.99714 * 22 20 18 26 26 C 1.47483 * 87.83825 * 27.00861 * 13 12 11 27 27 O 1.33930 * 125.61715 * 180.32063 * 2 1 3 28 28 H 1.09008 * 109.47011 * 90.00200 * 1 2 3 29 29 H 1.09005 * 109.47141 * 209.99791 * 1 2 3 30 30 H 1.09004 * 109.47405 * 330.00062 * 1 2 3 31 31 H 1.07996 * 126.44375 * 0.03621 * 3 2 1 32 32 H 1.09001 * 109.47281 * 269.97631 * 5 4 3 33 33 H 1.09008 * 109.47416 * 29.97496 * 5 4 3 34 34 H 1.08998 * 109.47531 * 149.97414 * 5 4 3 35 35 H 1.09005 * 109.47536 * 275.69294 * 10 9 7 36 36 H 1.09008 * 109.47068 * 35.68668 * 10 9 7 37 37 H 1.08998 * 109.47321 * 155.68745 * 10 9 7 38 38 H 1.08997 * 113.25058 * 12.95244 * 11 9 7 39 39 H 1.09000 * 113.48065 * 105.55847 * 12 11 9 40 40 H 1.09006 * 113.53066 * 335.10220 * 12 11 9 41 41 H 1.09009 * 109.46751 * 49.99850 * 14 13 12 42 42 H 1.09001 * 109.47233 * 290.00192 * 14 13 12 43 43 H 0.97000 * 119.99783 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99488 * 180.02562 * 21 20 18 45 45 H 1.08999 * 113.47319 * 87.75331 * 26 13 12 46 46 H 1.09000 * 113.47485 * 218.22020 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8616 1.5144 -0.0003 6 6 3.5823 -0.7115 -0.0004 7 6 4.7415 -1.6100 -0.0013 8 8 5.8646 -1.1544 0.1088 9 7 4.5630 -2.9402 -0.1242 10 6 3.2084 -3.4962 -0.1724 11 6 5.7234 -3.8303 -0.2095 12 6 5.7911 -4.6526 -1.5040 13 7 6.2391 -5.7979 -0.6900 14 6 5.5949 -7.0419 -1.1318 15 6 6.2506 -8.2162 -0.4521 16 8 7.1651 -8.0347 0.3237 17 7 5.8177 -9.4678 -0.7025 18 6 6.4147 -10.5360 -0.0845 19 1 7.2316 -10.3747 0.6032 20 6 5.9680 -11.8264 -0.3422 21 7 6.5399 -12.8503 0.2506 22 14 4.5545 -12.1053 -1.5312 23 1 5.0907 -12.2832 -2.9045 24 1 3.8043 -13.3228 -1.1312 25 1 3.6450 -10.9318 -1.5030 26 6 5.5133 -5.2018 0.4472 27 8 2.2870 -1.0887 -0.0061 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9612 2.1261 0.0005 32 1 5.1598 1.7224 -1.0279 33 1 4.6512 2.4523 0.5139 34 1 5.6684 0.9916 0.5134 35 1 2.8360 -3.6346 0.8426 36 1 2.5531 -2.8102 -0.7094 37 1 3.2281 -4.4571 -0.6865 38 1 6.6605 -3.3425 0.0588 39 1 6.5457 -4.2969 -2.2056 40 1 4.8192 -4.8069 -1.9729 41 1 5.7005 -7.1419 -2.2122 42 1 4.5368 -7.0157 -0.8712 43 1 5.0842 -9.6127 -1.3204 44 1 6.2283 -13.7510 0.0704 45 1 4.4668 -5.5022 0.4998 46 1 6.0325 -5.3116 1.3993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499649214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:38 Heat of formation + Delta-G solvation = -25.003041 kcal Electronic energy + Delta-G solvation = -28545.384746 eV Core-core repulsion = 24437.846799 eV Total energy + Delta-G solvation = -4107.537947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.79471 -41.93207 -40.34950 -39.55633 -36.46890 -35.94938 -34.97778 -33.76858 -33.35370 -31.62119 -28.97267 -28.54374 -28.19955 -27.16840 -26.87482 -25.06696 -22.64931 -22.46289 -21.29030 -20.58292 -20.45055 -20.15393 -18.66854 -17.97568 -17.80770 -17.70837 -16.90193 -16.72640 -16.59118 -16.01172 -15.85804 -15.62492 -15.15554 -14.87498 -14.68127 -14.51135 -14.29509 -14.14308 -14.06179 -13.99397 -13.82434 -13.74431 -13.67265 -13.64373 -13.27011 -13.11739 -12.91154 -12.77071 -12.55106 -12.41637 -12.09565 -11.96775 -11.94281 -11.50874 -11.24773 -10.64650 -10.49122 -10.24863 -9.89966 -9.84350 -9.37705 -8.41023 -6.02408 -0.03610 1.29514 1.31528 1.36495 1.44154 1.45449 1.91995 1.96163 2.00100 2.23610 2.66806 3.13488 3.21384 3.31132 3.47160 3.65015 3.77168 3.78119 4.00873 4.04466 4.14558 4.23823 4.28798 4.41449 4.43479 4.46487 4.52239 4.60219 4.63793 4.70308 4.73483 4.74202 4.75406 4.87879 4.91864 4.99870 5.16226 5.24684 5.27040 5.30424 5.51874 5.53636 5.85625 5.87505 5.97941 6.18764 6.59834 6.85896 6.88674 7.39773 7.98405 8.76892 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.002160 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.961409 B =12961.343367 C =13891.998193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 C -0.233 4.233 4 C -0.088 4.088 5 C -0.096 4.096 6 C -0.117 4.117 7 C 0.599 3.401 8 O -0.553 6.553 9 N -0.593 5.593 10 C 0.066 3.934 11 C 0.125 3.875 12 C -0.002 4.002 13 N -0.473 5.473 14 C 0.021 3.979 15 C 0.451 3.549 16 O -0.612 6.612 17 N -0.592 5.592 18 C -0.329 4.329 19 H 0.051 0.949 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.258 1.258 24 H -0.275 1.275 25 H -0.227 1.227 26 C -0.004 4.004 27 O -0.159 6.159 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.179 0.821 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.098 0.902 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.192 29.670 -7.089 37.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.252 4.252 4 C -0.091 4.091 5 C -0.153 4.153 6 C -0.168 4.168 7 C 0.389 3.611 8 O -0.434 6.434 9 N -0.323 5.323 10 C -0.075 4.075 11 C 0.021 3.979 12 C -0.131 4.131 13 N -0.196 5.196 14 C -0.110 4.110 15 C 0.239 3.761 16 O -0.495 6.495 17 N -0.234 5.234 18 C -0.458 4.458 19 H 0.070 0.930 20 C -0.217 4.217 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.150 1.150 26 C -0.134 4.134 27 O -0.057 6.057 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.196 0.804 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.350 29.266 -6.426 35.668 hybrid contribution -0.706 -0.804 -0.157 1.081 sum -20.056 28.462 -6.583 35.435 Atomic orbital electron populations 1.20661 0.81500 1.05914 1.05374 1.23723 0.95948 0.83878 0.99111 1.21785 0.90693 1.01301 1.11431 1.20969 0.97746 0.92123 0.98290 1.20450 0.93156 0.98549 1.03130 1.21449 0.82246 0.94010 1.19129 1.16923 0.86291 0.81601 0.76288 1.90821 1.24023 1.76196 1.52335 1.47726 1.08274 1.05148 1.71188 1.22231 0.80670 1.01077 1.03484 1.22537 0.89866 0.88259 0.97237 1.24396 1.02254 0.89814 0.96671 1.68708 1.45421 1.00193 1.05309 1.22486 0.97812 0.88933 1.01790 1.20895 0.85710 0.84403 0.85105 1.90557 1.33244 1.85600 1.40124 1.42019 1.33557 1.05395 1.42437 1.18984 1.16521 0.85747 1.24545 0.93044 1.26181 1.01681 0.93872 0.99928 1.69818 1.43661 0.99773 1.44426 0.85323 0.77798 0.79906 0.78207 1.18198 1.20057 1.15045 1.24403 0.99163 0.92672 0.97123 1.84218 1.15301 1.34714 1.71445 0.87924 0.89358 0.86993 0.80353 0.90390 0.89306 0.91606 0.91476 0.88802 0.88788 0.86888 0.88559 0.87914 0.85866 0.88203 0.77393 0.91158 0.88374 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.41 71.24 0.74 0.51 16 2 C 0.03 0.31 7.31 24.97 0.18 0.49 16 3 C -0.23 -3.10 10.73 22.07 0.24 -2.87 16 4 C -0.09 -1.71 6.20 -19.75 -0.12 -1.83 16 5 C -0.10 -1.72 9.88 71.23 0.70 -1.02 16 6 C -0.12 -2.54 6.78 24.07 0.16 -2.38 16 7 C 0.60 15.34 7.64 86.44 0.66 16.00 16 8 O -0.55 -17.50 14.22 -4.34 -0.06 -17.56 16 9 N -0.59 -12.77 3.11 -826.34 -2.57 -15.34 16 10 C 0.07 0.96 8.47 127.77 1.08 2.05 16 11 C 0.13 3.08 4.56 45.45 0.21 3.28 16 12 C 0.00 -0.04 7.23 83.58 0.60 0.56 16 13 N -0.47 -14.50 5.82 -932.50 -5.43 -19.93 16 14 C 0.02 0.64 5.30 85.56 0.45 1.09 16 15 C 0.45 20.66 7.85 87.66 0.69 21.35 16 16 O -0.61 -35.32 16.01 -3.07 -0.05 -35.37 16 17 N -0.59 -27.90 5.09 -306.99 -1.56 -29.47 16 18 C -0.33 -19.47 10.16 84.04 0.85 -18.61 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 20 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 21 N -0.94 -56.91 13.96 21.67 0.30 -56.60 16 22 Si 0.97 38.33 27.74 68.60 1.90 40.23 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 24 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 26 C 0.00 -0.11 7.11 83.58 0.59 0.49 16 27 O -0.16 -2.67 7.25 -5.10 -0.04 -2.71 16 28 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 29 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 1.51 6.34 -2.39 -0.02 1.49 16 35 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.24 5.31 -2.38 -0.01 1.23 16 37 H 0.09 1.03 5.97 -2.39 -0.01 1.01 16 38 H 0.11 3.32 7.26 -2.39 -0.02 3.31 16 39 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.10 1.59 6.82 -2.38 -0.02 1.57 16 41 H 0.12 2.93 8.08 -2.38 -0.02 2.91 16 42 H 0.10 2.21 7.30 -2.39 -0.02 2.19 16 43 H 0.39 14.88 5.76 -92.71 -0.53 14.34 16 44 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 45 H 0.10 2.12 5.71 -2.39 -0.01 2.11 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -86.97 376.50 0.44 -86.53 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.43 Total: 31.67 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 7.52 Total: 18.55 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -9.26 Total: -121.34 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -0.15 Total: -55.64 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.23 kcal Total: -86.97 0.44 -86.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499649214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.529 kcal (2) G-P(sol) polarization free energy of solvation -86.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds