Wall clock time and date at job start Tue Mar 31 2020 19:21:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.30007 * 127.33288 * 2 1
4 4 O 1.20663 * 112.30295 * 180.02562 * 3 2 1
5 5 C 1.33494 * 113.15176 * 0.02562 * 4 3 2
6 6 C 1.50699 * 126.82327 * 180.02562 * 5 4 3
7 7 C 1.53000 * 117.50321 * 60.02403 * 6 5 4
8 8 C 1.52997 * 117.50247 * 351.39502 * 6 5 4
9 9 C 1.37355 * 106.34537 * 0.25636 * 5 4 3
10 10 C 1.47398 * 128.56717 * 179.70263 * 9 5 4
11 11 O 1.21604 * 119.99959 * 90.00218 * 10 9 5
12 12 N 1.34777 * 119.99871 * 270.00298 * 10 9 5
13 13 C 1.47154 * 120.98367 * 359.97438 * 12 10 9
14 14 C 1.53294 * 108.38324 * 230.51297 * 13 12 10
15 15 O 1.42959 * 109.22700 * 307.69863 * 14 13 12
16 16 C 1.42964 * 114.16775 * 62.57857 * 15 14 13
17 17 H 1.08998 * 109.50892 * 57.34780 * 16 15 14
18 18 C 1.52997 * 109.51204 * 177.45100 * 16 15 14
19 19 N 1.46496 * 109.46947 * 299.99785 * 18 16 15
20 20 C 1.36945 * 120.00127 * 180.02562 * 19 18 16
21 21 H 1.08004 * 119.99770 * 0.02562 * 20 19 18
22 22 C 1.38803 * 120.00114 * 180.02562 * 20 19 18
23 23 N 1.31624 * 120.00389 * 0.02562 * 22 20 19
24 24 Si 1.86808 * 120.00045 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.46824 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.47051 * 119.99808 * 24 22 20
27 27 H 1.48497 * 109.46835 * 240.00050 * 24 22 20
28 28 C 1.47151 * 120.98109 * 179.71922 * 12 10 9
29 29 H 1.08996 * 109.47329 * 89.97552 * 1 2 3
30 30 H 1.08998 * 109.46980 * 209.97755 * 1 2 3
31 31 H 1.08996 * 109.46838 * 329.97212 * 1 2 3
32 32 H 1.09002 * 115.55636 * 205.70802 * 6 5 4
33 33 H 1.08990 * 117.49990 * 145.01584 * 7 6 5
34 34 H 1.09004 * 117.49237 * 359.97438 * 7 6 5
35 35 H 1.08999 * 117.49685 * 0.02562 * 8 6 5
36 36 H 1.08999 * 117.52022 * 214.97066 * 8 6 5
37 37 H 1.09001 * 109.67926 * 350.23328 * 13 12 10
38 38 H 1.08996 * 109.68546 * 110.78627 * 13 12 10
39 39 H 1.09007 * 109.51518 * 67.62315 * 14 13 12
40 40 H 1.08998 * 109.51257 * 187.76828 * 14 13 12
41 41 H 1.08996 * 109.47375 * 60.00032 * 18 16 15
42 42 H 1.09001 * 109.46934 * 180.02562 * 18 16 15
43 43 H 0.97004 * 120.00110 * 0.02562 * 19 18 16
44 44 H 0.97000 * 120.00029 * 179.97438 * 23 22 20
45 45 H 1.09002 * 109.68107 * 249.20846 * 28 12 10
46 46 H 1.09000 * 109.67959 * 9.75999 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2955 1.0337 0.0000
4 8 3.4608 0.7208 -0.0005
5 6 3.6494 -0.6007 -0.0015
6 6 4.9713 -1.3245 -0.0018
7 6 5.9164 -1.0699 1.1742
8 6 6.2354 -0.4867 -0.2039
9 6 2.3992 -1.1696 -0.0075
10 6 2.0402 -2.5992 -0.0169
11 8 1.8899 -3.1952 1.0324
12 7 1.8785 -3.2457 -1.1884
13 6 2.0545 -2.5454 -2.4706
14 6 0.8274 -2.8242 -3.3461
15 8 0.6112 -4.2355 -3.4179
16 6 0.3200 -4.8478 -2.1593
17 1 -0.5573 -4.3745 -1.7185
18 6 0.0461 -6.3386 -2.3675
19 7 -1.0985 -6.5039 -3.2667
20 6 -1.5315 -7.7595 -3.6004
21 1 -1.0293 -8.6279 -3.2003
22 6 -2.6157 -7.9161 -4.4529
23 7 -3.2274 -6.8577 -4.9409
24 14 -3.2067 -9.6289 -4.9075
25 1 -2.3566 -10.6415 -4.2313
26 1 -4.6168 -9.7974 -4.4732
27 1 -3.1168 -9.8092 -6.3787
28 6 1.5261 -4.6739 -1.2230
29 1 -0.3634 0.0004 -1.0276
30 1 -0.3633 -0.8902 0.5135
31 1 -0.3633 0.8897 0.5143
32 1 4.9583 -2.3271 -0.4291
33 1 6.5252 -1.9050 1.5204
34 1 5.5822 -0.3786 1.9479
35 1 6.1110 0.5881 -0.3363
36 1 7.0544 -0.9379 -0.7640
37 1 2.1437 -1.4735 -2.2942
38 1 2.9519 -2.9119 -2.9689
39 1 -0.0482 -2.3435 -2.9096
40 1 0.9981 -2.4305 -4.3481
41 1 0.9244 -6.8116 -2.8066
42 1 -0.1762 -6.8047 -1.4075
43 1 -1.5498 -5.7239 -3.6258
44 1 -3.9848 -6.9672 -5.5369
45 1 2.3712 -5.2515 -1.5976
46 1 1.2654 -5.0121 -0.2201
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001502063952.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:21:11
Heat of formation + Delta-G solvation = 30.585811 kcal
Electronic energy + Delta-G solvation = -29438.448325 eV
Core-core repulsion = 25333.320891 eV
Total energy + Delta-G solvation = -4105.127434 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-45.22127 -40.38502 -38.39641 -37.84545 -35.20659 -34.79211 -34.42383 -32.40291
-31.92230 -30.20558 -29.14066 -28.24042 -26.23281 -24.50590 -23.91273 -23.54670
-22.92311 -22.33065 -20.96627 -20.19243 -19.47889 -18.25682 -17.83330 -17.16552
-16.93908 -16.63220 -16.33374 -16.02407 -15.31451 -15.11802 -14.72529 -14.56856
-14.38265 -13.91578 -13.68384 -13.65348 -13.47344 -13.18986 -13.09731 -12.73513
-12.55947 -12.46851 -12.25184 -12.09515 -11.83394 -11.65130 -11.56167 -11.05969
-10.96239 -10.91572 -10.81662 -10.62670 -10.34211 -10.14618 -10.01885 -9.94379
-9.70328 -9.50813 -8.87808 -8.66399 -6.89872 -5.73593 -3.02382 0.89025
1.57535 2.12257 2.36679 2.76627 3.25156 3.45209 3.50564 3.52985
3.70053 3.77542 3.89067 4.19117 4.22379 4.36045 4.40990 4.55659
4.67994 4.81991 4.85387 4.96435 5.02755 5.07630 5.12971 5.17096
5.18809 5.24257 5.28698 5.38343 5.42437 5.47906 5.57128 5.58461
5.59330 5.64813 5.73086 5.81391 5.89069 6.18212 6.25621 6.53035
6.66383 7.04280 7.40514 7.71809 7.81637 7.88336 8.44510 9.56444
10.13270 10.49166 11.49231
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.021869 B = 0.002500 C = 0.002400
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.055366 B =11198.817823 C =11664.806481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.058 3.942
3 N -0.353 5.353
4 O 0.097 5.903
5 C 0.049 3.951
6 C -0.095 4.095
7 C -0.155 4.155
8 C -0.160 4.160
9 C -0.239 4.239
10 C 0.602 3.398
11 O -0.522 6.522
12 N -0.601 5.601
13 C 0.074 3.926
14 C 0.047 3.953
15 O -0.354 6.354
16 C 0.074 3.926
17 H 0.064 0.936
18 C 0.164 3.836
19 N -0.726 5.726
20 C -0.239 4.239
21 H 0.071 0.929
22 C -0.014 4.014
23 N -0.931 5.931
24 Si 0.907 3.093
25 H -0.280 1.280
26 H -0.292 1.292
27 H -0.292 1.292
28 C 0.085 3.915
29 H 0.088 0.912
30 H 0.086 0.914
31 H 0.084 0.916
32 H 0.138 0.862
33 H 0.110 0.890
34 H 0.102 0.898
35 H 0.106 0.894
36 H 0.109 0.891
37 H 0.086 0.914
38 H 0.081 0.919
39 H 0.054 0.946
40 H 0.106 0.894
41 H 0.029 0.971
42 H 0.036 0.964
43 H 0.388 0.612
44 H 0.254 0.746
45 H 0.082 0.918
46 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.223 16.942 9.620 26.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.105 4.105
3 N -0.060 5.060
4 O 0.035 5.965
5 C -0.015 4.015
6 C -0.114 4.114
7 C -0.192 4.192
8 C -0.197 4.197
9 C -0.246 4.246
10 C 0.388 3.612
11 O -0.398 6.398
12 N -0.335 5.335
13 C -0.049 4.049
14 C -0.031 4.031
15 O -0.272 6.272
16 C 0.015 3.985
17 H 0.082 0.918
18 C 0.035 3.965
19 N -0.370 5.370
20 C -0.370 4.370
21 H 0.089 0.911
22 C -0.210 4.210
23 N -0.580 5.580
24 Si 0.738 3.262
25 H -0.205 1.205
26 H -0.219 1.219
27 H -0.219 1.219
28 C -0.037 4.037
29 H 0.106 0.894
30 H 0.104 0.896
31 H 0.103 0.897
32 H 0.156 0.844
33 H 0.129 0.871
34 H 0.120 0.880
35 H 0.125 0.875
36 H 0.128 0.872
37 H 0.104 0.896
38 H 0.099 0.901
39 H 0.072 0.928
40 H 0.124 0.876
41 H 0.047 0.953
42 H 0.054 0.946
43 H 0.222 0.778
44 H 0.064 0.936
45 H 0.100 0.900
46 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 17.945 17.643 10.009 27.083
hybrid contribution -0.663 -1.188 -0.278 1.389
sum 17.283 16.455 9.730 25.771
Atomic orbital electron populations
1.20276 0.84873 1.04554 1.04112 1.24769 0.98671 0.86271 1.00751
1.73641 0.88956 1.23106 1.20260 1.84510 1.21595 1.22228 1.68119
1.23492 0.95411 0.83523 0.99038 1.20502 0.84068 0.99457 1.07383
1.23130 1.00474 1.03918 0.91698 1.23116 0.96672 1.00309 0.99640
1.21734 0.92599 0.95255 1.14986 1.16886 0.76896 0.83951 0.83500
1.90831 1.50374 1.67443 1.31160 1.48090 1.68654 1.11258 1.05478
1.22506 1.00434 0.97705 0.84239 1.22903 0.95522 0.84205 1.00459
1.88181 1.90698 1.18881 1.29471 1.22887 0.94881 0.96732 0.84011
0.91766 1.20625 0.92220 0.88795 0.94838 1.42217 1.33445 1.06276
1.55108 1.19268 1.10095 0.84946 1.22664 0.91083 1.24744 0.98807
0.97125 1.00312 1.69687 1.24128 1.27398 1.36798 0.86112 0.78325
0.83828 0.77893 1.20539 1.21905 1.21874 1.22521 0.98890 0.79557
1.02724 0.89365 0.89567 0.89693 0.84407 0.87137 0.87952 0.87546
0.87227 0.89606 0.90082 0.92786 0.87644 0.95325 0.94618 0.77821
0.93608 0.89981 0.87786
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.74 10.49 36.01 0.38 -0.36 16
2 C 0.06 0.65 7.54 -79.77 -0.60 0.05 16
3 N -0.35 -4.14 12.01 34.78 0.42 -3.72 16
4 O 0.10 1.03 10.86 18.65 0.20 1.23 16
5 C 0.05 0.49 7.00 -34.63 -0.24 0.25 16
6 C -0.10 -0.71 6.15 -91.77 -0.56 -1.27 16
7 C -0.16 -0.93 10.24 -26.73 -0.27 -1.20 16
8 C -0.16 -0.83 10.18 -26.73 -0.27 -1.11 16
9 C -0.24 -2.80 4.25 -102.89 -0.44 -3.24 16
10 C 0.60 8.12 7.53 -12.53 -0.09 8.03 16
11 O -0.52 -8.77 16.57 5.27 0.09 -8.68 16
12 N -0.60 -7.48 3.01 -173.32 -0.52 -8.00 16
13 C 0.07 0.77 6.54 -3.53 -0.02 0.75 16
14 C 0.05 0.58 6.98 37.31 0.26 0.84 16
15 O -0.35 -6.00 10.13 -35.23 -0.36 -6.36 16
16 C 0.07 1.22 2.88 -26.38 -0.08 1.14 16
17 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
18 C 0.16 3.28 5.96 -4.05 -0.02 3.25 16
19 N -0.73 -18.70 5.50 -59.91 -0.33 -19.03 16
20 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16
21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16
22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16
23 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16
24 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16
25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
28 C 0.09 1.17 5.95 -3.34 -0.02 1.15 16
29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.14 1.00 8.14 -51.93 -0.42 0.57 16
33 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.11 0.55 8.02 -51.93 -0.42 0.13 16
36 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.09 0.79 6.39 -51.93 -0.33 0.46 16
38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
40 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16
41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
42 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.39 10.63 7.54 -40.82 -0.31 10.32 16
44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16
45 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
46 H 0.10 1.47 7.08 -51.93 -0.37 1.10 16
LS Contribution 388.35 15.07 5.85 5.85
Total: -1.00 -34.61 388.35 -8.07 -42.68
By element:
Atomic # 1 Polarization: 12.29 SS G_CDS: -6.89 Total: 5.40 kcal
Atomic # 6 Polarization: 3.11 SS G_CDS: -2.24 Total: 0.87 kcal
Atomic # 7 Polarization: -58.80 SS G_CDS: 0.29 Total: -58.51 kcal
Atomic # 8 Polarization: -13.74 SS G_CDS: -0.07 Total: -13.81 kcal
Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -34.61 -8.07 -42.68 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001502063952.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.265 kcal
(2) G-P(sol) polarization free energy of solvation -34.607 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.658 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds