Wall clock time and date at job start Tue Mar 31 2020 19:21:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.30007 * 127.33288 * 2 1
4 4 O 1.20663 * 112.30295 * 180.02562 * 3 2 1
5 5 C 1.33494 * 113.15176 * 0.02562 * 4 3 2
6 6 C 1.50699 * 126.82327 * 180.02562 * 5 4 3
7 7 C 1.53000 * 117.50321 * 60.02403 * 6 5 4
8 8 C 1.52997 * 117.50247 * 351.39502 * 6 5 4
9 9 C 1.37355 * 106.34537 * 0.25636 * 5 4 3
10 10 C 1.47398 * 128.56717 * 179.70263 * 9 5 4
11 11 O 1.21604 * 119.99959 * 90.00218 * 10 9 5
12 12 N 1.34777 * 119.99871 * 270.00298 * 10 9 5
13 13 C 1.47154 * 120.98367 * 359.97438 * 12 10 9
14 14 C 1.53294 * 108.38324 * 230.51297 * 13 12 10
15 15 O 1.42959 * 109.22700 * 307.69863 * 14 13 12
16 16 C 1.42964 * 114.16775 * 62.57857 * 15 14 13
17 17 H 1.08998 * 109.50892 * 57.34780 * 16 15 14
18 18 C 1.52997 * 109.51204 * 177.45100 * 16 15 14
19 19 N 1.46496 * 109.46947 * 299.99785 * 18 16 15
20 20 C 1.36945 * 120.00127 * 180.02562 * 19 18 16
21 21 H 1.08004 * 119.99770 * 0.02562 * 20 19 18
22 22 C 1.38803 * 120.00114 * 180.02562 * 20 19 18
23 23 N 1.31624 * 120.00389 * 0.02562 * 22 20 19
24 24 Si 1.86808 * 120.00045 * 180.02562 * 22 20 19
25 25 H 1.48500 * 109.46824 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.47051 * 119.99808 * 24 22 20
27 27 H 1.48497 * 109.46835 * 240.00050 * 24 22 20
28 28 C 1.47151 * 120.98109 * 179.71922 * 12 10 9
29 29 H 1.08996 * 109.47329 * 89.97552 * 1 2 3
30 30 H 1.08998 * 109.46980 * 209.97755 * 1 2 3
31 31 H 1.08996 * 109.46838 * 329.97212 * 1 2 3
32 32 H 1.09002 * 115.55636 * 205.70802 * 6 5 4
33 33 H 1.08990 * 117.49990 * 145.01584 * 7 6 5
34 34 H 1.09004 * 117.49237 * 359.97438 * 7 6 5
35 35 H 1.08999 * 117.49685 * 0.02562 * 8 6 5
36 36 H 1.08999 * 117.52022 * 214.97066 * 8 6 5
37 37 H 1.09001 * 109.67926 * 350.23328 * 13 12 10
38 38 H 1.08996 * 109.68546 * 110.78627 * 13 12 10
39 39 H 1.09007 * 109.51518 * 67.62315 * 14 13 12
40 40 H 1.08998 * 109.51257 * 187.76828 * 14 13 12
41 41 H 1.08996 * 109.47375 * 60.00032 * 18 16 15
42 42 H 1.09001 * 109.46934 * 180.02562 * 18 16 15
43 43 H 0.97004 * 120.00110 * 0.02562 * 19 18 16
44 44 H 0.97000 * 120.00029 * 179.97438 * 23 22 20
45 45 H 1.09002 * 109.68107 * 249.20846 * 28 12 10
46 46 H 1.09000 * 109.67959 * 9.75999 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2955 1.0337 0.0000
4 8 3.4608 0.7208 -0.0005
5 6 3.6494 -0.6007 -0.0015
6 6 4.9713 -1.3245 -0.0018
7 6 5.9164 -1.0699 1.1742
8 6 6.2354 -0.4867 -0.2039
9 6 2.3992 -1.1696 -0.0075
10 6 2.0402 -2.5992 -0.0169
11 8 1.8899 -3.1952 1.0324
12 7 1.8785 -3.2457 -1.1884
13 6 2.0545 -2.5454 -2.4706
14 6 0.8274 -2.8242 -3.3461
15 8 0.6112 -4.2355 -3.4179
16 6 0.3200 -4.8478 -2.1593
17 1 -0.5573 -4.3745 -1.7185
18 6 0.0461 -6.3386 -2.3675
19 7 -1.0985 -6.5039 -3.2667
20 6 -1.5315 -7.7595 -3.6004
21 1 -1.0293 -8.6279 -3.2003
22 6 -2.6157 -7.9161 -4.4529
23 7 -3.2274 -6.8577 -4.9409
24 14 -3.2067 -9.6289 -4.9075
25 1 -2.3566 -10.6415 -4.2313
26 1 -4.6168 -9.7974 -4.4732
27 1 -3.1168 -9.8092 -6.3787
28 6 1.5261 -4.6739 -1.2230
29 1 -0.3634 0.0004 -1.0276
30 1 -0.3633 -0.8902 0.5135
31 1 -0.3633 0.8897 0.5143
32 1 4.9583 -2.3271 -0.4291
33 1 6.5252 -1.9050 1.5204
34 1 5.5822 -0.3786 1.9479
35 1 6.1110 0.5881 -0.3363
36 1 7.0544 -0.9379 -0.7640
37 1 2.1437 -1.4735 -2.2942
38 1 2.9519 -2.9119 -2.9689
39 1 -0.0482 -2.3435 -2.9096
40 1 0.9981 -2.4305 -4.3481
41 1 0.9244 -6.8116 -2.8066
42 1 -0.1762 -6.8047 -1.4075
43 1 -1.5498 -5.7239 -3.6258
44 1 -3.9848 -6.9672 -5.5369
45 1 2.3712 -5.2515 -1.5976
46 1 1.2654 -5.0121 -0.2201
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001502063952.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:21:10
Heat of formation + Delta-G solvation = 7.897603 kcal
Electronic energy + Delta-G solvation = -29439.432159 eV
Core-core repulsion = 25333.320891 eV
Total energy + Delta-G solvation = -4106.111268 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-46.06205 -41.48011 -39.57744 -38.37954 -36.69341 -35.92674 -35.60999 -33.94411
-32.91056 -31.83716 -29.93910 -29.39970 -27.68646 -25.69573 -24.89171 -24.62069
-23.79971 -23.31859 -22.33256 -21.08688 -20.34005 -19.27521 -19.08527 -18.68346
-17.91952 -17.68523 -17.24824 -17.03841 -16.66298 -16.29957 -16.01531 -15.78474
-15.50575 -15.04450 -15.00250 -14.55483 -14.39767 -14.33493 -14.30377 -14.05594
-13.92342 -13.48409 -13.12120 -13.06719 -12.81683 -12.66698 -12.59029 -12.45503
-12.28550 -12.20217 -12.02250 -11.89637 -11.74769 -11.46731 -11.39596 -11.19336
-11.00389 -10.95875 -10.27022 -9.76654 -8.99326 -7.93088 -5.22317 0.09929
0.71376 1.09621 1.47873 1.49490 1.50018 1.60175 1.87184 2.57224
2.71204 2.74294 2.90177 3.06687 3.35382 3.41103 3.50418 3.57415
3.76715 3.84479 3.90905 3.92958 4.00220 4.07821 4.12677 4.26868
4.36322 4.40260 4.41097 4.48279 4.49079 4.60587 4.61407 4.70931
4.74083 4.79222 4.88922 4.94431 4.98881 5.03304 5.09018 5.13069
5.18706 5.50278 6.03130 6.19746 6.28761 6.77327 7.06355 7.34990
8.09180 8.33422 9.30840
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.021869 B = 0.002500 C = 0.002400
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.055366 B =11198.817823 C =11664.806481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.054 3.946
3 N -0.368 5.368
4 O 0.097 5.903
5 C 0.068 3.932
6 C -0.118 4.118
7 C -0.154 4.154
8 C -0.140 4.140
9 C -0.265 4.265
10 C 0.609 3.391
11 O -0.561 6.561
12 N -0.597 5.597
13 C 0.082 3.918
14 C 0.042 3.958
15 O -0.383 6.383
16 C 0.087 3.913
17 H 0.051 0.949
18 C 0.160 3.840
19 N -0.740 5.740
20 C -0.244 4.244
21 H 0.079 0.921
22 C -0.077 4.077
23 N -0.970 5.970
24 Si 0.975 3.025
25 H -0.264 1.264
26 H -0.294 1.294
27 H -0.293 1.293
28 C 0.096 3.904
29 H 0.101 0.899
30 H 0.077 0.923
31 H 0.096 0.904
32 H 0.142 0.858
33 H 0.124 0.876
34 H 0.096 0.904
35 H 0.108 0.892
36 H 0.130 0.870
37 H 0.101 0.899
38 H 0.099 0.901
39 H 0.052 0.948
40 H 0.127 0.873
41 H 0.033 0.967
42 H 0.045 0.955
43 H 0.375 0.625
44 H 0.251 0.749
45 H 0.097 0.903
46 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.229 17.174 9.584 28.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.108 4.108
3 N -0.076 5.076
4 O 0.037 5.963
5 C 0.004 3.996
6 C -0.137 4.137
7 C -0.191 4.191
8 C -0.177 4.177
9 C -0.272 4.272
10 C 0.396 3.604
11 O -0.440 6.440
12 N -0.330 5.330
13 C -0.040 4.040
14 C -0.036 4.036
15 O -0.302 6.302
16 C 0.028 3.972
17 H 0.069 0.931
18 C 0.033 3.967
19 N -0.383 5.383
20 C -0.375 4.375
21 H 0.097 0.903
22 C -0.269 4.269
23 N -0.621 5.621
24 Si 0.804 3.196
25 H -0.189 1.189
26 H -0.221 1.221
27 H -0.220 1.220
28 C -0.027 4.027
29 H 0.119 0.881
30 H 0.096 0.904
31 H 0.115 0.885
32 H 0.159 0.841
33 H 0.143 0.857
34 H 0.115 0.885
35 H 0.126 0.874
36 H 0.149 0.851
37 H 0.119 0.881
38 H 0.117 0.883
39 H 0.070 0.930
40 H 0.145 0.855
41 H 0.051 0.949
42 H 0.063 0.937
43 H 0.207 0.793
44 H 0.059 0.941
45 H 0.115 0.885
46 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 20.003 17.885 9.982 28.629
hybrid contribution -1.202 -1.193 -0.240 1.710
sum 18.801 16.692 9.743 26.963
Atomic orbital electron populations
1.20354 0.83850 1.04691 1.04975 1.25060 0.99459 0.86046 1.00216
1.73632 0.89316 1.23402 1.21246 1.84495 1.21262 1.22482 1.68031
1.23920 0.95982 0.83135 0.96553 1.20695 0.83692 0.99901 1.09406
1.23242 0.99740 1.04397 0.91762 1.23234 0.95433 1.00198 0.98842
1.21585 0.93593 0.94357 1.17665 1.17025 0.75972 0.84414 0.82993
1.90806 1.52230 1.68447 1.32520 1.48103 1.67937 1.10791 1.06126
1.22575 1.00133 0.98494 0.82835 1.23161 0.96365 0.81820 1.02215
1.88123 1.90936 1.21460 1.29649 1.22572 0.95698 0.94369 0.84592
0.93144 1.20780 0.90352 0.91667 0.93894 1.42414 1.34876 1.05101
1.55926 1.19699 1.09796 0.86171 1.21880 0.90318 1.25600 0.99447
1.00927 1.00964 1.69846 1.24767 1.29564 1.37882 0.85044 0.77604
0.79672 0.77254 1.18854 1.22080 1.22043 1.22309 0.98120 0.80705
1.01563 0.88103 0.90422 0.88522 0.84072 0.85733 0.88500 0.87379
0.85148 0.88068 0.88268 0.92970 0.85542 0.94889 0.93748 0.79270
0.94055 0.88468 0.88373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.45 10.49 71.24 0.75 -0.70 16
2 C 0.05 1.19 7.54 45.16 0.34 1.53 16
3 N -0.37 -8.27 12.01 -44.78 -0.54 -8.80 16
4 O 0.10 1.94 10.86 76.97 0.84 2.78 16
5 C 0.07 1.26 7.00 25.48 0.18 1.44 16
6 C -0.12 -1.53 6.15 -11.54 -0.07 -1.60 16
7 C -0.15 -1.51 10.24 30.60 0.31 -1.20 16
8 C -0.14 -1.06 10.18 30.60 0.31 -0.75 16
9 C -0.26 -5.99 4.25 -18.74 -0.08 -6.07 16
10 C 0.61 16.08 7.53 86.66 0.65 16.73 16
11 O -0.56 -18.92 16.57 -4.04 -0.07 -18.99 16
12 N -0.60 -14.18 3.01 -820.52 -2.47 -16.65 16
13 C 0.08 1.54 6.54 86.35 0.56 2.10 16
14 C 0.04 0.96 6.98 72.08 0.50 1.46 16
15 O -0.38 -12.77 10.13 -148.98 -1.51 -14.28 16
16 C 0.09 2.85 2.88 30.82 0.09 2.94 16
17 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
18 C 0.16 6.39 5.96 86.38 0.51 6.90 16
19 N -0.74 -38.54 5.50 -343.47 -1.89 -40.43 16
20 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16
21 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16
22 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16
23 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16
24 Si 0.98 46.49 29.55 68.60 2.03 48.51 16
25 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16
26 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16
27 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
28 C 0.10 2.54 5.95 86.48 0.51 3.05 16
29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16
32 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16
33 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16
34 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16
35 H 0.11 0.82 8.02 -2.39 -0.02 0.80 16
36 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16
37 H 0.10 1.65 6.39 -2.39 -0.02 1.63 16
38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
39 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16
40 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16
41 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16
42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
43 H 0.38 21.08 7.54 -92.71 -0.70 20.38 16
44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16
45 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16
46 H 0.10 2.75 7.08 -2.39 -0.02 2.73 16
Total: -1.00 -74.77 388.35 2.86 -71.91
By element:
Atomic # 1 Polarization: 26.79 SS G_CDS: 0.30 Total: 27.09 kcal
Atomic # 6 Polarization: 2.98 SS G_CDS: 5.89 Total: 8.87 kcal
Atomic # 7 Polarization: -121.27 SS G_CDS: -4.62 Total: -125.89 kcal
Atomic # 8 Polarization: -29.76 SS G_CDS: -0.74 Total: -30.50 kcal
Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal
Total: -74.77 2.86 -71.91 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001502063952.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.809 kcal
(2) G-P(sol) polarization free energy of solvation -74.772 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.037 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.911 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.898 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds