Wall clock time and date at job start Tue Mar 31 2020 19:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40366 * 126.64605 * 2 1 4 4 C 1.35130 * 107.11452 * 180.21996 * 3 2 1 5 5 O 1.33934 * 108.76633 * 359.77597 * 4 3 2 6 6 C 1.34916 * 109.38567 * 0.02562 * 5 4 3 7 7 C 1.46655 * 125.98411 * 179.97438 * 6 5 4 8 8 O 1.21704 * 119.99347 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00615 * 0.02989 * 7 6 5 10 10 C 1.48149 * 127.83363 * 359.97021 * 9 7 6 11 11 C 1.54386 * 104.61714 * 140.41768 * 10 9 7 12 12 H 1.09006 * 110.34358 * 142.73384 * 11 10 9 13 13 C 1.52997 * 110.34576 * 264.99490 * 11 10 9 14 14 C 1.54284 * 104.96030 * 23.86718 * 11 10 9 15 15 H 1.09000 * 110.34726 * 118.97785 * 14 11 10 16 16 N 1.46901 * 110.34086 * 241.13104 * 14 11 10 17 17 C 1.46902 * 110.99844 * 204.99647 * 16 14 11 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46636 * 60.00069 * 25 23 21 27 27 H 1.48498 * 109.47594 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47124 * 300.00305 * 25 23 21 29 29 C 1.48144 * 127.84054 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47552 * 270.15932 * 1 2 3 31 31 H 1.09000 * 109.46611 * 30.16317 * 1 2 3 32 32 H 1.09006 * 109.47043 * 150.15666 * 1 2 3 33 33 H 1.07999 * 126.44032 * 359.97438 * 3 2 1 34 34 H 1.08003 * 125.62052 * 179.77656 * 4 3 2 35 35 H 1.08998 * 110.40989 * 21.63153 * 10 9 7 36 36 H 1.09004 * 110.40673 * 259.20120 * 10 9 7 37 37 H 1.08996 * 109.47403 * 175.53465 * 13 11 10 38 38 H 1.08999 * 109.47026 * 295.54165 * 13 11 10 39 39 H 1.09004 * 109.46909 * 55.53678 * 13 11 10 40 40 H 1.00902 * 111.00235 * 81.04884 * 16 14 11 41 41 H 1.09004 * 109.47131 * 60.00016 * 17 16 14 42 42 H 1.08994 * 109.47471 * 299.99766 * 17 16 14 43 43 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 44 44 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 45 45 H 1.09003 * 110.40543 * 100.80191 * 29 9 7 46 46 H 1.08994 * 110.40720 * 338.36501 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0030 6 6 2.3219 -1.0956 0.0026 7 6 1.8843 -2.4953 0.0058 8 8 0.6967 -2.7614 0.0104 9 7 2.7971 -3.4868 0.0036 10 6 4.2733 -3.3630 -0.0024 11 6 4.7616 -4.4763 0.9492 12 1 5.6831 -4.9200 0.5721 13 6 4.9767 -3.9165 2.3568 14 6 3.6266 -5.5213 0.9552 15 1 3.9910 -6.4787 0.5828 16 7 3.0816 -5.6755 2.3106 17 6 2.4680 -6.9990 2.4839 18 6 1.9220 -7.1202 3.8832 19 8 2.0326 -6.1949 4.6597 20 7 1.3053 -8.2544 4.2701 21 6 0.8035 -8.3627 5.5413 22 1 0.9020 -7.5388 6.2327 23 6 0.1682 -9.5322 5.9403 24 7 0.0488 -10.5348 5.0993 25 14 -0.5149 -9.6799 7.6726 26 1 -1.5353 -8.6239 7.8940 27 1 -1.1389 -11.0161 7.8465 28 1 0.5870 -9.5172 8.6548 29 6 2.5518 -4.9478 0.0067 30 1 -0.3634 0.0029 1.0276 31 1 -0.3632 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0306 2.1595 -0.0004 34 1 4.5047 1.2916 -0.0097 35 1 4.5742 -2.3843 0.3715 36 1 4.6641 -3.5234 -1.0073 37 1 5.2441 -4.7280 3.0336 38 1 5.7805 -3.1806 2.3362 39 1 4.0585 -3.4421 2.7033 40 1 2.4225 -4.9411 2.5211 41 1 3.2187 -7.7719 2.3190 42 1 1.6575 -7.1205 1.7654 43 1 1.2166 -8.9943 3.6491 44 1 -0.3944 -11.3514 5.3778 45 1 2.6738 -5.3558 -0.9967 46 1 1.5539 -5.1649 0.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502701441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:19 Heat of formation + Delta-G solvation = -42.409581 kcal Electronic energy + Delta-G solvation = -29150.097200 eV Core-core repulsion = 25041.804448 eV Total energy + Delta-G solvation = -4108.292751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96158 -40.21566 -38.46380 -37.81326 -34.77492 -34.22073 -33.72299 -32.25449 -31.18215 -30.85305 -29.13863 -27.78142 -26.57592 -25.94321 -24.19892 -23.43952 -22.20239 -21.32931 -19.74971 -19.61663 -19.22783 -17.97925 -17.73255 -16.84163 -16.54876 -16.17019 -16.05143 -15.63029 -14.99433 -14.58924 -14.47090 -14.17288 -13.98691 -13.71114 -13.65093 -13.54800 -13.30543 -13.21694 -13.01937 -12.84582 -12.36841 -12.34946 -12.03262 -12.01674 -11.79247 -11.65890 -11.49943 -11.14469 -10.98054 -10.86017 -10.66137 -10.42083 -10.24104 -10.18673 -9.96241 -9.47437 -9.13521 -8.77622 -8.41969 -8.01539 -7.92874 -6.39057 -3.79779 0.83714 2.07827 2.36792 2.86075 2.99831 3.22382 3.27672 3.32347 3.93822 4.08674 4.20218 4.32500 4.40207 4.51670 4.52924 4.72288 4.95893 5.05249 5.16925 5.21625 5.23513 5.26362 5.31477 5.32984 5.43987 5.48167 5.56186 5.60464 5.70127 5.72264 5.79617 5.84102 5.91783 5.96726 6.03019 6.12504 6.20200 6.27422 6.31945 6.61951 6.66595 7.20568 7.29733 7.57638 7.61454 7.87534 8.08795 8.64058 9.20577 9.57051 10.08678 10.78692 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.002513 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.500998 B =11140.675396 C =11846.684670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.087 4.087 3 C -0.224 4.224 4 C -0.009 4.009 5 O -0.160 6.160 6 C -0.078 4.078 7 C 0.621 3.379 8 O -0.517 6.517 9 N -0.611 5.611 10 C 0.098 3.902 11 C -0.095 4.095 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.076 3.924 15 H 0.097 0.903 16 N -0.652 5.652 17 C 0.047 3.953 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.075 3.925 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.155 0.845 34 H 0.209 0.791 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.077 0.923 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.819 18.027 -16.170 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.243 4.243 4 C -0.079 4.079 5 O -0.055 6.055 6 C -0.129 4.129 7 C 0.410 3.590 8 O -0.395 6.395 9 N -0.344 5.344 10 C -0.025 4.025 11 C -0.115 4.115 12 H 0.106 0.894 13 C -0.180 4.180 14 C -0.036 4.036 15 H 0.115 0.885 16 N -0.284 5.284 17 C -0.086 4.086 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.049 4.049 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.173 0.827 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.912 17.972 -15.316 25.609 hybrid contribution -1.186 -0.275 -0.126 1.224 sum 8.727 17.697 -15.442 25.056 Atomic orbital electron populations 1.20442 0.88175 1.03509 1.03147 1.20655 0.97724 0.90961 0.99663 1.21735 0.92450 1.00108 1.10019 1.24391 0.99928 0.80983 1.02588 1.84154 1.28233 1.22347 1.70804 1.21736 0.81505 0.94392 1.15276 1.16104 0.84683 0.81196 0.76978 1.90884 1.15185 1.82016 1.51452 1.48719 1.07262 1.06348 1.72093 1.22779 0.78975 1.00988 0.99757 1.22173 0.97796 0.94539 0.96985 0.89433 1.21495 1.00720 1.00715 0.95044 1.22629 0.93920 0.98755 0.88335 0.88521 1.60299 1.41636 1.03970 1.22450 1.21759 0.98120 0.92214 0.96488 1.19787 0.84069 0.84489 0.88977 1.90528 1.61911 1.39467 1.54761 1.41851 1.50197 1.14139 1.13862 1.19648 1.32733 1.01121 0.89334 0.88018 1.25250 0.97670 0.95165 0.99840 1.69603 1.43830 1.05198 1.35771 0.85923 0.79171 0.77253 0.81908 1.19915 1.20986 1.19903 1.23256 1.01409 0.79325 1.00957 0.90579 0.91500 0.89517 0.82727 0.77433 0.88966 0.90989 0.90735 0.94079 0.92702 0.82654 0.89439 0.93807 0.77473 0.91846 0.90485 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.81 36.01 0.35 -0.68 16 2 C -0.09 -1.00 6.20 -104.43 -0.65 -1.65 16 3 C -0.22 -1.92 10.83 -39.89 -0.43 -2.35 16 4 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 5 O -0.16 -1.64 7.80 4.98 0.04 -1.60 16 6 C -0.08 -0.98 6.97 -36.80 -0.26 -1.23 16 7 C 0.62 8.97 7.88 -12.87 -0.10 8.87 16 8 O -0.52 -8.91 15.00 5.18 0.08 -8.83 16 9 N -0.61 -7.53 3.32 -170.85 -0.57 -8.10 16 10 C 0.10 0.94 6.25 -2.41 -0.02 0.92 16 11 C -0.10 -0.95 3.66 -89.22 -0.33 -1.28 16 12 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.12 -1.47 8.10 37.16 0.30 -1.17 16 14 C 0.08 0.87 3.37 -66.31 -0.22 0.65 16 15 H 0.10 0.97 7.82 -51.93 -0.41 0.56 16 16 N -0.65 -10.28 4.11 -106.51 -0.44 -10.72 16 17 C 0.05 0.81 6.02 -4.97 -0.03 0.78 16 18 C 0.44 10.51 7.82 -10.98 -0.09 10.43 16 19 O -0.58 -16.04 15.78 5.55 0.09 -15.95 16 20 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.07 0.88 6.49 -2.41 -0.02 0.86 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.08 6.45 -51.93 -0.33 0.74 16 33 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.21 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.09 0.89 5.26 -51.93 -0.27 0.62 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 40 H 0.35 6.34 7.74 -39.29 -0.30 6.04 16 41 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.22 7.73 -51.93 -0.40 0.82 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -34.04 380.81 -7.36 -41.39 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.58 Total: 13.98 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.36 Total: 6.35 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.34 Total: -57.45 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: 0.20 Total: -26.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.04 -7.36 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502701441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.017 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds