Wall clock time and date at job start Tue Mar 31 2020 19:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40366 * 126.64605 * 2 1 4 4 C 1.35130 * 107.11452 * 180.21996 * 3 2 1 5 5 O 1.33934 * 108.76633 * 359.77597 * 4 3 2 6 6 C 1.34916 * 109.38567 * 0.02562 * 5 4 3 7 7 C 1.46655 * 125.98411 * 179.97438 * 6 5 4 8 8 O 1.21704 * 119.99347 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00615 * 0.02989 * 7 6 5 10 10 C 1.48149 * 127.83363 * 359.97021 * 9 7 6 11 11 C 1.54386 * 104.61714 * 140.41768 * 10 9 7 12 12 H 1.09006 * 110.34358 * 142.73384 * 11 10 9 13 13 C 1.52997 * 110.34576 * 264.99490 * 11 10 9 14 14 C 1.54284 * 104.96030 * 23.86718 * 11 10 9 15 15 H 1.09000 * 110.34726 * 118.97785 * 14 11 10 16 16 N 1.46901 * 110.34086 * 241.13104 * 14 11 10 17 17 C 1.46902 * 110.99844 * 204.99647 * 16 14 11 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 14 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00325 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46636 * 60.00069 * 25 23 21 27 27 H 1.48498 * 109.47594 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47124 * 300.00305 * 25 23 21 29 29 C 1.48144 * 127.84054 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47552 * 270.15932 * 1 2 3 31 31 H 1.09000 * 109.46611 * 30.16317 * 1 2 3 32 32 H 1.09006 * 109.47043 * 150.15666 * 1 2 3 33 33 H 1.07999 * 126.44032 * 359.97438 * 3 2 1 34 34 H 1.08003 * 125.62052 * 179.77656 * 4 3 2 35 35 H 1.08998 * 110.40989 * 21.63153 * 10 9 7 36 36 H 1.09004 * 110.40673 * 259.20120 * 10 9 7 37 37 H 1.08996 * 109.47403 * 175.53465 * 13 11 10 38 38 H 1.08999 * 109.47026 * 295.54165 * 13 11 10 39 39 H 1.09004 * 109.46909 * 55.53678 * 13 11 10 40 40 H 1.00902 * 111.00235 * 81.04884 * 16 14 11 41 41 H 1.09004 * 109.47131 * 60.00016 * 17 16 14 42 42 H 1.08994 * 109.47471 * 299.99766 * 17 16 14 43 43 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 44 44 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 45 45 H 1.09003 * 110.40543 * 100.80191 * 29 9 7 46 46 H 1.08994 * 110.40720 * 338.36501 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0030 6 6 2.3219 -1.0956 0.0026 7 6 1.8843 -2.4953 0.0058 8 8 0.6967 -2.7614 0.0104 9 7 2.7971 -3.4868 0.0036 10 6 4.2733 -3.3630 -0.0024 11 6 4.7616 -4.4763 0.9492 12 1 5.6831 -4.9200 0.5721 13 6 4.9767 -3.9165 2.3568 14 6 3.6266 -5.5213 0.9552 15 1 3.9910 -6.4787 0.5828 16 7 3.0816 -5.6755 2.3106 17 6 2.4680 -6.9990 2.4839 18 6 1.9220 -7.1202 3.8832 19 8 2.0326 -6.1949 4.6597 20 7 1.3053 -8.2544 4.2701 21 6 0.8035 -8.3627 5.5413 22 1 0.9020 -7.5388 6.2327 23 6 0.1682 -9.5322 5.9403 24 7 0.0488 -10.5348 5.0993 25 14 -0.5149 -9.6799 7.6726 26 1 -1.5353 -8.6239 7.8940 27 1 -1.1389 -11.0161 7.8465 28 1 0.5870 -9.5172 8.6548 29 6 2.5518 -4.9478 0.0067 30 1 -0.3634 0.0029 1.0276 31 1 -0.3632 0.8885 -0.5164 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0306 2.1595 -0.0004 34 1 4.5047 1.2916 -0.0097 35 1 4.5742 -2.3843 0.3715 36 1 4.6641 -3.5234 -1.0073 37 1 5.2441 -4.7280 3.0336 38 1 5.7805 -3.1806 2.3362 39 1 4.0585 -3.4421 2.7033 40 1 2.4225 -4.9411 2.5211 41 1 3.2187 -7.7719 2.3190 42 1 1.6575 -7.1205 1.7654 43 1 1.2166 -8.9943 3.6491 44 1 -0.3944 -11.3514 5.3778 45 1 2.6738 -5.3558 -0.9967 46 1 1.5539 -5.1649 0.3875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502701441.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:18 Heat of formation + Delta-G solvation = -67.122500 kcal Electronic energy + Delta-G solvation = -29151.168832 eV Core-core repulsion = 25041.804448 eV Total energy + Delta-G solvation = -4109.364384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.69939 -41.20133 -40.10958 -39.12071 -36.19429 -35.58432 -35.00585 -33.38346 -33.14251 -31.63989 -30.15968 -28.81719 -27.73298 -27.22496 -25.77135 -24.52150 -22.97846 -22.11642 -21.17382 -20.70070 -20.38021 -19.93961 -18.74441 -17.73925 -17.71417 -17.36393 -17.13088 -16.69743 -16.52666 -16.14732 -15.97693 -15.41124 -15.36503 -14.92018 -14.73927 -14.50641 -14.27492 -14.14390 -14.02988 -13.88147 -13.62082 -13.57999 -13.35484 -13.18048 -13.02944 -12.86138 -12.84913 -12.74651 -12.45301 -12.14966 -12.07584 -11.80793 -11.53937 -11.51902 -11.26332 -10.69386 -10.36998 -10.08265 -10.02766 -9.58674 -9.22962 -8.48025 -5.96852 0.00007 1.38119 1.39544 1.39606 1.50768 1.54334 2.02649 2.04244 2.06719 2.27819 2.89434 3.19026 3.37120 3.51570 3.55967 3.77467 3.80668 3.93112 4.09720 4.21444 4.29696 4.35336 4.44975 4.49999 4.54728 4.57653 4.60610 4.63826 4.67713 4.69505 4.77625 4.83671 4.92349 5.05548 5.11793 5.19719 5.20887 5.35506 5.38996 5.45254 5.63832 5.88625 5.90344 6.11494 6.23867 6.35843 6.59015 6.87534 7.11213 7.54909 8.10814 8.69227 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016471 B = 0.002513 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.500998 B =11140.675396 C =11846.684670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.099 4.099 3 C -0.236 4.236 4 C 0.013 3.987 5 O -0.163 6.163 6 C -0.112 4.112 7 C 0.610 3.390 8 O -0.565 6.565 9 N -0.613 5.613 10 C 0.100 3.900 11 C -0.087 4.087 12 H 0.123 0.877 13 C -0.116 4.116 14 C 0.076 3.924 15 H 0.125 0.875 16 N -0.661 5.661 17 C 0.062 3.938 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.268 1.268 28 H -0.271 1.271 29 C 0.075 3.925 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.182 0.818 34 H 0.258 0.742 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.021 0.979 40 H 0.335 0.665 41 H 0.116 0.884 42 H 0.061 0.939 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.105 0.895 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.066 18.806 -17.594 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.254 4.254 4 C -0.056 4.056 5 O -0.059 6.059 6 C -0.164 4.164 7 C 0.400 3.600 8 O -0.447 6.447 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.106 4.106 12 H 0.141 0.859 13 C -0.174 4.174 14 C -0.035 4.035 15 H 0.142 0.858 16 N -0.291 5.291 17 C -0.070 4.070 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.196 1.196 29 C -0.049 4.049 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.199 0.801 34 H 0.274 0.726 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.154 0.846 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.123 0.877 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.208 18.720 -16.777 27.945 hybrid contribution -1.813 -0.404 0.297 1.881 sum 10.395 18.316 -16.480 26.742 Atomic orbital electron populations 1.20410 0.88494 1.03540 1.02710 1.21014 0.98070 0.92112 0.99052 1.22070 0.92385 1.00524 1.10457 1.25404 1.01301 0.79993 0.98870 1.84134 1.26948 1.23853 1.70916 1.21462 0.82754 0.93747 1.18398 1.16475 0.84480 0.82413 0.76590 1.90839 1.17000 1.82974 1.53862 1.48849 1.08381 1.06218 1.71037 1.22957 0.77083 1.00916 1.01187 1.22212 0.98499 0.94131 0.95796 0.85917 1.21402 0.99743 1.00275 0.95968 1.22830 0.94037 1.00694 0.85928 0.85769 1.60346 1.40730 1.02432 1.25620 1.21640 0.99286 0.94017 0.92077 1.20944 0.82481 0.83041 0.91139 1.90495 1.63145 1.40717 1.56848 1.41921 1.50786 1.14996 1.13324 1.19608 1.35064 1.01298 0.90524 0.90574 1.26030 0.97217 0.94372 1.03596 1.69660 1.43720 1.05465 1.37201 0.85007 0.78432 0.77763 0.77242 1.19921 1.19256 1.19608 1.23287 0.99889 0.79460 1.02287 0.91264 0.88925 0.91928 0.80109 0.72628 0.88898 0.88045 0.92949 0.91944 0.95954 0.84642 0.86652 0.92099 0.76920 0.91244 0.87706 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.14 9.81 71.24 0.70 -1.44 16 2 C -0.10 -2.28 6.20 -19.74 -0.12 -2.40 16 3 C -0.24 -3.50 10.83 22.07 0.24 -3.26 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.16 -3.05 7.80 -5.08 -0.04 -3.09 16 6 C -0.11 -2.85 6.97 24.07 0.17 -2.68 16 7 C 0.61 18.45 7.88 86.44 0.68 19.13 16 8 O -0.56 -21.11 15.00 -4.36 -0.07 -21.17 16 9 N -0.61 -14.99 3.32 -812.66 -2.69 -17.68 16 10 C 0.10 1.68 6.25 86.53 0.54 2.22 16 11 C -0.09 -1.51 3.66 -9.89 -0.04 -1.54 16 12 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 13 C -0.12 -2.70 8.10 71.98 0.58 -2.12 16 14 C 0.08 1.62 3.37 45.82 0.15 1.77 16 15 H 0.12 2.01 7.82 -2.39 -0.02 1.99 16 16 N -0.66 -20.93 4.11 -490.88 -2.02 -22.94 16 17 C 0.06 2.13 6.02 85.56 0.51 2.65 16 18 C 0.44 21.42 7.82 87.66 0.69 22.10 16 19 O -0.63 -36.07 15.78 -3.07 -0.05 -36.12 16 20 N -0.57 -30.23 5.29 -306.98 -1.62 -31.85 16 21 C -0.34 -19.61 9.68 84.04 0.81 -18.80 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 24 N -0.92 -50.54 13.05 21.66 0.28 -50.26 16 25 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 C 0.07 1.70 6.49 86.54 0.56 2.26 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.71 6.45 -2.38 -0.02 1.70 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.26 0.20 8.06 -2.91 -0.02 0.18 16 35 H 0.09 1.59 5.26 -2.39 -0.01 1.57 16 36 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.05 1.44 7.84 -2.39 -0.02 1.43 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.02 0.64 7.57 -2.38 -0.02 0.62 16 40 H 0.34 12.70 7.74 -89.69 -0.69 12.00 16 41 H 0.12 3.36 8.07 -2.38 -0.02 3.34 16 42 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 43 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 44 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 45 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.65 7.73 -2.39 -0.02 1.63 16 Total: -1.00 -79.80 380.81 2.18 -77.61 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.40 Total: 40.78 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 6.76 Total: 18.65 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.05 Total: -122.73 kcal Atomic # 8 Polarization: -60.23 SS G_CDS: -0.15 Total: -60.38 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -79.80 2.18 -77.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502701441.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.492 kcal (2) G-P(sol) polarization free energy of solvation -79.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds