Wall clock time and date at job start Tue Mar 31 2020 19:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40358 * 126.64741 * 2 1 4 4 C 1.35135 * 107.11763 * 180.21814 * 3 2 1 5 5 O 1.33931 * 108.76123 * 359.78014 * 4 3 2 6 6 C 1.34915 * 109.38714 * 359.97438 * 5 4 3 7 7 C 1.46659 * 125.98425 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99527 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00190 * 0.02992 * 7 6 5 10 10 C 1.48139 * 127.84025 * 359.97438 * 9 7 6 11 11 C 1.54390 * 104.61987 * 219.59304 * 10 9 7 12 12 H 1.09007 * 110.42936 * 217.21589 * 11 10 9 13 13 C 1.52997 * 110.34460 * 95.00520 * 11 10 9 14 14 C 1.54285 * 104.95773 * 336.12923 * 11 10 9 15 15 H 1.08999 * 110.34611 * 241.13084 * 14 11 10 16 16 N 1.46905 * 110.33797 * 118.87563 * 14 11 10 17 17 C 1.46898 * 110.99820 * 155.00525 * 16 14 11 18 18 C 1.50701 * 109.47024 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99765 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99838 * 179.97438 * 18 17 16 21 21 C 1.37109 * 119.99744 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99863 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00031 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99733 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00156 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47021 * 89.99901 * 25 23 21 27 27 H 1.48494 * 109.47270 * 210.00140 * 25 23 21 28 28 H 1.48497 * 109.46883 * 330.00283 * 25 23 21 29 29 C 1.48144 * 127.83611 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.47409 * 270.15781 * 1 2 3 31 31 H 1.09005 * 109.47318 * 30.15767 * 1 2 3 32 32 H 1.08997 * 109.47136 * 150.15713 * 1 2 3 33 33 H 1.08006 * 126.44510 * 359.97438 * 3 2 1 34 34 H 1.07996 * 125.61966 * 179.77963 * 4 3 2 35 35 H 1.09004 * 110.40767 * 100.80534 * 10 9 7 36 36 H 1.09004 * 110.40585 * 338.37598 * 10 9 7 37 37 H 1.09002 * 109.47153 * 304.46127 * 13 11 10 38 38 H 1.09001 * 109.46832 * 184.46318 * 13 11 10 39 39 H 1.09004 * 109.47261 * 64.46299 * 13 11 10 40 40 H 1.00901 * 110.99659 * 278.95223 * 16 14 11 41 41 H 1.09006 * 109.46852 * 299.99253 * 17 16 14 42 42 H 1.08995 * 109.47846 * 59.99331 * 17 16 14 43 43 H 0.96990 * 120.00403 * 359.97438 * 20 18 17 44 44 H 0.97004 * 119.99442 * 180.02562 * 24 23 21 45 45 H 1.09005 * 110.41147 * 21.62517 * 29 9 7 46 46 H 1.08998 * 110.50465 * 259.24476 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6744 -0.0049 5 8 3.6004 -0.6648 -0.0030 6 6 2.3219 -1.0956 0.0037 7 6 1.8842 -2.4953 0.0071 8 8 0.6967 -2.7614 0.0127 9 7 2.7970 -3.4868 0.0041 10 6 4.2732 -3.3631 -0.0031 11 6 4.7532 -4.4790 -0.9560 12 1 5.6784 -4.9221 -0.5874 13 6 4.9559 -3.9230 -2.3668 14 6 3.6181 -5.5240 -0.9492 15 1 3.9852 -6.4799 -0.5756 16 7 3.0614 -5.6819 -2.2994 17 6 2.4463 -7.0057 -2.4637 18 6 1.8881 -7.1308 -3.8579 19 8 1.9921 -6.2076 -4.6378 20 7 1.2734 -8.2683 -4.2382 21 6 0.7651 -8.3818 -5.5065 22 1 0.8570 -7.5596 -6.2006 23 6 0.1319 -9.5548 -5.8987 24 7 0.0197 -10.5551 -5.0538 25 14 -0.5613 -9.7092 -7.6265 26 1 0.4796 -10.2623 -8.5298 27 1 -1.7355 -10.6180 -7.6093 28 1 -0.9788 -8.3701 -8.1138 29 6 2.5517 -4.9478 0.0062 30 1 -0.3634 0.0028 1.0276 31 1 -0.3634 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0307 2.1595 -0.0004 34 1 4.5046 1.2915 -0.0096 35 1 4.6727 -3.5208 0.9988 36 1 4.5708 -2.3854 -0.3823 37 1 4.0348 -3.4495 -2.7066 38 1 5.2175 -4.7363 -3.0437 39 1 5.7600 -3.1871 -2.3553 40 1 2.4005 -4.9480 -2.5061 41 1 3.1984 -7.7782 -2.3033 42 1 1.6420 -7.1254 -1.7378 43 1 1.1906 -9.0066 -3.6147 44 1 -0.4221 -11.3741 -5.3279 45 1 1.5506 -5.1658 -0.3660 46 1 2.6805 -5.3551 1.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502701442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:22 Heat of formation + Delta-G solvation = -42.453362 kcal Electronic energy + Delta-G solvation = -29151.015578 eV Core-core repulsion = 25042.720928 eV Total energy + Delta-G solvation = -4108.294650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.96278 -40.21823 -38.46614 -37.81523 -34.77589 -34.22158 -33.72383 -32.25527 -31.18278 -30.85352 -29.14147 -27.78212 -26.57631 -25.94398 -24.19964 -23.44075 -22.20259 -21.33009 -19.74947 -19.61842 -19.22928 -17.98049 -17.73375 -16.83922 -16.55127 -16.17329 -16.05415 -15.63152 -15.00126 -14.58283 -14.46751 -14.20828 -13.95329 -13.70098 -13.65441 -13.55742 -13.29862 -13.23033 -13.01528 -12.84654 -12.38736 -12.34449 -12.03756 -12.00241 -11.79314 -11.66022 -11.50133 -11.14635 -10.99988 -10.86198 -10.66241 -10.37336 -10.23843 -10.19226 -9.96698 -9.48446 -9.13626 -8.77683 -8.42093 -8.01630 -7.92962 -6.39350 -3.79942 0.83644 2.07812 2.36593 2.86037 2.99768 3.19917 3.28315 3.34569 3.93574 4.08641 4.20163 4.32453 4.40209 4.51859 4.53009 4.72263 4.95880 5.05214 5.16835 5.21949 5.23390 5.26299 5.31317 5.32930 5.43939 5.48557 5.53871 5.60312 5.70132 5.72276 5.79679 5.84009 5.92737 5.96693 6.02970 6.12440 6.20659 6.27346 6.31859 6.61967 6.66505 7.20500 7.29688 7.57703 7.61336 7.87461 8.08893 8.63865 9.20525 9.56958 10.08507 10.78473 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.002512 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.708448 B =11145.754829 C =11849.670011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.087 4.087 3 C -0.224 4.224 4 C -0.009 4.009 5 O -0.160 6.160 6 C -0.077 4.077 7 C 0.621 3.379 8 O -0.517 6.517 9 N -0.611 5.611 10 C 0.098 3.902 11 C -0.095 4.095 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.076 3.924 15 H 0.097 0.903 16 N -0.652 5.652 17 C 0.047 3.953 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.074 3.926 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.209 0.791 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.086 0.914 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.931 18.110 16.004 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.243 4.243 4 C -0.079 4.079 5 O -0.055 6.055 6 C -0.129 4.129 7 C 0.410 3.590 8 O -0.395 6.395 9 N -0.344 5.344 10 C -0.025 4.025 11 C -0.115 4.115 12 H 0.106 0.894 13 C -0.180 4.180 14 C -0.036 4.036 15 H 0.115 0.885 16 N -0.284 5.284 17 C -0.086 4.086 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.050 4.050 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.173 0.827 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.013 18.061 15.147 25.610 hybrid contribution -1.174 -0.292 0.167 1.221 sum 8.839 17.769 15.314 25.067 Atomic orbital electron populations 1.20441 0.88174 1.03837 1.02826 1.20651 0.97726 0.90957 0.99669 1.21737 0.92452 1.00113 1.10013 1.24391 0.99930 0.80982 1.02587 1.84153 1.28235 1.22349 1.70797 1.21740 0.81507 0.94394 1.15265 1.16102 0.84678 0.81196 0.76979 1.90881 1.15186 1.82011 1.51446 1.48714 1.07261 1.06341 1.72099 1.22775 0.78994 1.00963 0.99753 1.22174 0.97826 0.94523 0.96979 0.89430 1.21498 1.00731 1.00738 0.95015 1.22618 0.93942 0.98741 0.88337 0.88520 1.60296 1.41117 1.03953 1.22986 1.21760 0.98098 0.92211 0.96517 1.19788 0.84072 0.84467 0.88982 1.90530 1.62046 1.39689 1.54386 1.41857 1.50215 1.13994 1.14012 1.19699 1.32562 1.01011 0.89491 0.87964 1.25257 0.97700 0.95190 0.99826 1.69617 1.44012 1.05152 1.35606 0.85859 0.78310 0.78345 0.81794 1.20409 1.20946 1.19425 1.23242 1.01444 0.79330 1.00944 0.90851 0.91393 0.89354 0.82728 0.77433 0.90982 0.88969 0.92706 0.90735 0.94078 0.82654 0.89435 0.93812 0.77477 0.91906 0.89518 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.81 36.01 0.35 -0.68 16 2 C -0.09 -1.00 6.20 -104.44 -0.65 -1.65 16 3 C -0.22 -1.92 10.83 -39.89 -0.43 -2.35 16 4 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 5 O -0.16 -1.64 7.80 4.99 0.04 -1.60 16 6 C -0.08 -0.97 6.97 -36.80 -0.26 -1.23 16 7 C 0.62 8.97 7.88 -12.86 -0.10 8.86 16 8 O -0.52 -8.90 15.01 5.19 0.08 -8.82 16 9 N -0.61 -7.53 3.32 -170.89 -0.57 -8.09 16 10 C 0.10 0.94 6.25 -2.41 -0.02 0.92 16 11 C -0.10 -0.95 3.66 -89.22 -0.33 -1.28 16 12 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.12 -1.47 8.10 37.16 0.30 -1.17 16 14 C 0.08 0.87 3.36 -66.34 -0.22 0.65 16 15 H 0.10 0.97 7.82 -51.93 -0.41 0.56 16 16 N -0.65 -10.27 4.10 -106.54 -0.44 -10.70 16 17 C 0.05 0.81 6.02 -4.98 -0.03 0.78 16 18 C 0.44 10.51 7.82 -10.99 -0.09 10.42 16 19 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 20 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 25 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 C 0.07 0.87 6.48 -2.44 -0.02 0.86 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.15 6.45 -51.93 -0.33 0.82 16 33 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.89 5.27 -51.93 -0.27 0.62 16 37 H 0.05 0.78 7.57 -51.93 -0.39 0.39 16 38 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.35 6.33 7.74 -39.29 -0.30 6.03 16 41 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 42 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.09 1.22 7.72 -51.93 -0.40 0.81 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -34.04 380.80 -7.36 -41.39 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -6.58 Total: 13.94 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.36 Total: 6.35 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.34 Total: -57.42 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: 0.20 Total: -26.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.04 -7.36 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502701442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.059 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds