Wall clock time and date at job start Tue Mar 31 2020 19:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40358 * 126.64741 * 2 1 4 4 C 1.35135 * 107.11763 * 180.21814 * 3 2 1 5 5 O 1.33931 * 108.76123 * 359.78014 * 4 3 2 6 6 C 1.34915 * 109.38714 * 359.97438 * 5 4 3 7 7 C 1.46659 * 125.98425 * 179.97438 * 6 5 4 8 8 O 1.21694 * 119.99527 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00190 * 0.02992 * 7 6 5 10 10 C 1.48139 * 127.84025 * 359.97438 * 9 7 6 11 11 C 1.54390 * 104.61987 * 219.59304 * 10 9 7 12 12 H 1.09007 * 110.42936 * 217.21589 * 11 10 9 13 13 C 1.52997 * 110.34460 * 95.00520 * 11 10 9 14 14 C 1.54285 * 104.95773 * 336.12923 * 11 10 9 15 15 H 1.08999 * 110.34611 * 241.13084 * 14 11 10 16 16 N 1.46905 * 110.33797 * 118.87563 * 14 11 10 17 17 C 1.46898 * 110.99820 * 155.00525 * 16 14 11 18 18 C 1.50701 * 109.47024 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99765 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99838 * 179.97438 * 18 17 16 21 21 C 1.37109 * 119.99744 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99863 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00031 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99733 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00156 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47021 * 89.99901 * 25 23 21 27 27 H 1.48494 * 109.47270 * 210.00140 * 25 23 21 28 28 H 1.48497 * 109.46883 * 330.00283 * 25 23 21 29 29 C 1.48144 * 127.83611 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.47409 * 270.15781 * 1 2 3 31 31 H 1.09005 * 109.47318 * 30.15767 * 1 2 3 32 32 H 1.08997 * 109.47136 * 150.15713 * 1 2 3 33 33 H 1.08006 * 126.44510 * 359.97438 * 3 2 1 34 34 H 1.07996 * 125.61966 * 179.77963 * 4 3 2 35 35 H 1.09004 * 110.40767 * 100.80534 * 10 9 7 36 36 H 1.09004 * 110.40585 * 338.37598 * 10 9 7 37 37 H 1.09002 * 109.47153 * 304.46127 * 13 11 10 38 38 H 1.09001 * 109.46832 * 184.46318 * 13 11 10 39 39 H 1.09004 * 109.47261 * 64.46299 * 13 11 10 40 40 H 1.00901 * 110.99659 * 278.95223 * 16 14 11 41 41 H 1.09006 * 109.46852 * 299.99253 * 17 16 14 42 42 H 1.08995 * 109.47846 * 59.99331 * 17 16 14 43 43 H 0.96990 * 120.00403 * 359.97438 * 20 18 17 44 44 H 0.97004 * 119.99442 * 180.02562 * 24 23 21 45 45 H 1.09005 * 110.41147 * 21.62517 * 29 9 7 46 46 H 1.08998 * 110.50465 * 259.24476 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6744 -0.0049 5 8 3.6004 -0.6648 -0.0030 6 6 2.3219 -1.0956 0.0037 7 6 1.8842 -2.4953 0.0071 8 8 0.6967 -2.7614 0.0127 9 7 2.7970 -3.4868 0.0041 10 6 4.2732 -3.3631 -0.0031 11 6 4.7532 -4.4790 -0.9560 12 1 5.6784 -4.9221 -0.5874 13 6 4.9559 -3.9230 -2.3668 14 6 3.6181 -5.5240 -0.9492 15 1 3.9852 -6.4799 -0.5756 16 7 3.0614 -5.6819 -2.2994 17 6 2.4463 -7.0057 -2.4637 18 6 1.8881 -7.1308 -3.8579 19 8 1.9921 -6.2076 -4.6378 20 7 1.2734 -8.2683 -4.2382 21 6 0.7651 -8.3818 -5.5065 22 1 0.8570 -7.5596 -6.2006 23 6 0.1319 -9.5548 -5.8987 24 7 0.0197 -10.5551 -5.0538 25 14 -0.5613 -9.7092 -7.6265 26 1 0.4796 -10.2623 -8.5298 27 1 -1.7355 -10.6180 -7.6093 28 1 -0.9788 -8.3701 -8.1138 29 6 2.5517 -4.9478 0.0062 30 1 -0.3634 0.0028 1.0276 31 1 -0.3634 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5114 33 1 2.0307 2.1595 -0.0004 34 1 4.5046 1.2915 -0.0096 35 1 4.6727 -3.5208 0.9988 36 1 4.5708 -2.3854 -0.3823 37 1 4.0348 -3.4495 -2.7066 38 1 5.2175 -4.7363 -3.0437 39 1 5.7600 -3.1871 -2.3553 40 1 2.4005 -4.9480 -2.5061 41 1 3.1984 -7.7782 -2.3033 42 1 1.6420 -7.1254 -1.7378 43 1 1.1906 -9.0066 -3.6147 44 1 -0.4221 -11.3741 -5.3279 45 1 1.5506 -5.1658 -0.3660 46 1 2.6805 -5.3551 1.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502701442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:22 Heat of formation + Delta-G solvation = -67.181445 kcal Electronic energy + Delta-G solvation = -29152.087868 eV Core-core repulsion = 25042.720928 eV Total energy + Delta-G solvation = -4109.366940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.69955 -41.20287 -40.11038 -39.12240 -36.19474 -35.58459 -35.00600 -33.38361 -33.14265 -31.63960 -30.16202 -28.81671 -27.73380 -27.22486 -25.77174 -24.52147 -22.97795 -22.11633 -21.17515 -20.69972 -20.38113 -19.94060 -18.74452 -17.73405 -17.71707 -17.36773 -17.13097 -16.70209 -16.52776 -16.14655 -15.97334 -15.39636 -15.38293 -14.95755 -14.68552 -14.52096 -14.27622 -14.10256 -14.06172 -13.88300 -13.62212 -13.58324 -13.35172 -13.17852 -13.04308 -12.86920 -12.84360 -12.74865 -12.43975 -12.15196 -12.07317 -11.81061 -11.54060 -11.52184 -11.26077 -10.69255 -10.37066 -10.08247 -10.02643 -9.58590 -9.22945 -8.48296 -5.96989 0.00138 1.36324 1.39707 1.39761 1.52702 1.54114 2.02938 2.04048 2.06687 2.27815 2.89378 3.18885 3.37122 3.51512 3.56032 3.77423 3.80655 3.93120 4.09785 4.21377 4.29623 4.35234 4.44863 4.49866 4.54648 4.57682 4.60613 4.63739 4.67907 4.69783 4.77676 4.83715 4.92519 5.05606 5.11748 5.19754 5.21056 5.35519 5.39169 5.45309 5.63757 5.88692 5.90401 6.11523 6.23811 6.35916 6.58897 6.87633 7.11236 7.54842 8.10729 8.69180 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.002512 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.708448 B =11145.754829 C =11849.670011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.099 4.099 3 C -0.236 4.236 4 C 0.014 3.986 5 O -0.163 6.163 6 C -0.112 4.112 7 C 0.610 3.390 8 O -0.565 6.565 9 N -0.613 5.613 10 C 0.100 3.900 11 C -0.087 4.087 12 H 0.123 0.877 13 C -0.116 4.116 14 C 0.076 3.924 15 H 0.125 0.875 16 N -0.661 5.661 17 C 0.062 3.938 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.334 4.334 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.275 1.275 29 C 0.075 3.925 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.181 0.819 34 H 0.258 0.742 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.021 0.979 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.335 0.665 41 H 0.116 0.884 42 H 0.061 0.939 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.056 0.944 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.194 18.875 17.423 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.254 4.254 4 C -0.056 4.056 5 O -0.059 6.059 6 C -0.164 4.164 7 C 0.400 3.600 8 O -0.447 6.447 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.106 4.106 12 H 0.141 0.859 13 C -0.174 4.174 14 C -0.035 4.035 15 H 0.142 0.858 16 N -0.291 5.291 17 C -0.070 4.070 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.094 0.906 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.194 1.194 27 H -0.194 1.194 28 H -0.200 1.200 29 C -0.049 4.049 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.199 0.801 34 H 0.274 0.726 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.154 0.846 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.325 18.792 16.603 27.941 hybrid contribution -1.809 -0.417 -0.258 1.874 sum 10.516 18.376 16.345 26.747 Atomic orbital electron populations 1.20406 0.88490 1.03239 1.03006 1.21010 0.98073 0.92112 0.99041 1.22069 0.92382 1.00523 1.10468 1.25404 1.01302 0.79992 0.98866 1.84133 1.26953 1.23853 1.70914 1.21462 0.82751 0.93743 1.18416 1.16474 0.84473 0.82415 0.76594 1.90837 1.16998 1.82966 1.53851 1.48845 1.08380 1.06210 1.71050 1.22952 0.77115 1.00886 1.01175 1.22214 0.98542 0.94119 0.95772 0.85918 1.21405 0.99744 1.00290 0.95956 1.22819 0.94043 1.00674 0.85954 0.85763 1.60345 1.40216 1.02419 1.26146 1.21641 0.99226 0.94012 0.92144 1.20945 0.82505 0.83020 0.91122 1.90497 1.63280 1.40938 1.56484 1.41925 1.50797 1.14855 1.13474 1.19642 1.34910 1.01166 0.90667 0.90594 1.26035 0.97262 0.94395 1.03559 1.69673 1.43923 1.05436 1.37030 0.84940 0.78109 0.78126 0.77236 1.19412 1.19418 1.20007 1.23273 0.99916 0.79467 1.02281 0.90323 0.89335 0.92453 0.80115 0.72631 0.88039 0.88902 0.95961 0.92951 0.91943 0.84640 0.86652 0.92095 0.76918 0.91261 0.92568 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.81 71.24 0.70 -1.43 16 2 C -0.10 -2.27 6.20 -19.75 -0.12 -2.39 16 3 C -0.24 -3.50 10.83 22.07 0.24 -3.26 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.16 -3.05 7.80 -5.05 -0.04 -3.09 16 6 C -0.11 -2.85 6.97 24.07 0.17 -2.69 16 7 C 0.61 18.46 7.88 86.44 0.68 19.14 16 8 O -0.56 -21.10 15.01 -4.33 -0.06 -21.17 16 9 N -0.61 -14.99 3.32 -812.78 -2.70 -17.68 16 10 C 0.10 1.68 6.25 86.54 0.54 2.22 16 11 C -0.09 -1.51 3.66 -9.89 -0.04 -1.55 16 12 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 13 C -0.12 -2.70 8.10 71.98 0.58 -2.12 16 14 C 0.08 1.62 3.36 45.80 0.15 1.77 16 15 H 0.12 2.01 7.82 -2.39 -0.02 2.00 16 16 N -0.66 -20.93 4.10 -490.98 -2.02 -22.94 16 17 C 0.06 2.13 6.02 85.56 0.51 2.65 16 18 C 0.44 21.42 7.82 87.66 0.69 22.11 16 19 O -0.63 -36.08 15.78 -3.08 -0.05 -36.13 16 20 N -0.57 -30.23 5.29 -306.97 -1.62 -31.86 16 21 C -0.33 -19.55 9.68 84.04 0.81 -18.74 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 24 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 25 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 29 C 0.07 1.70 6.48 86.52 0.56 2.26 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.06 1.65 6.45 -2.39 -0.02 1.64 16 33 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.26 0.20 8.06 -2.91 -0.02 0.18 16 35 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.09 1.59 5.27 -2.39 -0.01 1.57 16 37 H 0.02 0.64 7.57 -2.39 -0.02 0.62 16 38 H 0.05 1.44 7.84 -2.39 -0.02 1.43 16 39 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.34 12.70 7.74 -89.69 -0.69 12.00 16 41 H 0.12 3.36 8.08 -2.38 -0.02 3.34 16 42 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 43 H 0.40 19.75 7.90 -92.72 -0.73 19.01 16 44 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.06 1.64 7.72 -2.38 -0.02 1.63 16 46 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -79.88 380.80 2.18 -77.70 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.40 Total: 40.65 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 6.76 Total: 18.70 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.05 Total: -122.74 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -0.15 Total: -60.39 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -79.88 2.18 -77.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502701442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.517 kcal (2) G-P(sol) polarization free energy of solvation -79.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds