Wall clock time and date at job start Tue Mar 31 2020 19:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34867 * 119.09915 * 2 1 4 4 C 1.41667 * 119.33387 * 179.97438 * 3 2 1 5 5 O 1.22093 * 121.06266 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86557 * 0.02562 * 4 3 2 7 7 C 1.47293 * 120.88067 * 179.97438 * 6 4 3 8 8 O 1.21624 * 119.99992 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99791 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99698 * 184.79525 * 9 7 6 11 11 C 1.52997 * 109.44937 * 302.07151 * 10 9 7 12 12 O 1.42901 * 109.47304 * 305.19317 * 11 10 9 13 13 C 1.53041 * 109.45869 * 182.10759 * 10 9 7 14 14 C 1.53195 * 109.30837 * 301.34065 * 13 10 9 15 15 N 1.46926 * 108.77775 * 305.36668 * 14 13 10 16 16 C 1.36934 * 120.62768 * 233.58816 * 15 14 13 17 17 H 1.07998 * 120.00421 * 29.40673 * 16 15 14 18 18 C 1.38820 * 119.99975 * 209.40695 * 16 15 14 19 19 N 1.31620 * 119.99606 * 14.72908 * 18 16 15 20 20 Si 1.86799 * 120.00027 * 194.72911 * 18 16 15 21 21 H 1.48507 * 109.46918 * 60.00172 * 20 18 16 22 22 H 1.48496 * 109.46898 * 179.97438 * 20 18 16 23 23 H 1.48488 * 109.47426 * 300.00043 * 20 18 16 24 24 C 1.46924 * 118.74031 * 53.60900 * 15 14 13 25 25 C 1.53041 * 109.46216 * 62.03610 * 10 9 7 26 26 C 1.37989 * 118.23683 * 0.26946 * 6 4 3 27 27 N 1.34344 * 120.36879 * 359.42389 * 26 6 4 28 28 H 0.96999 * 118.80362 * 180.33069 * 27 26 6 29 29 H 1.09001 * 109.47096 * 89.99696 * 1 2 3 30 30 H 1.08999 * 109.47201 * 210.00085 * 1 2 3 31 31 H 1.08996 * 109.46805 * 329.99665 * 1 2 3 32 32 H 1.07999 * 120.33328 * 0.02676 * 3 2 1 33 33 H 0.96996 * 119.99867 * 4.79139 * 9 7 6 34 34 H 1.08996 * 109.47303 * 65.19717 * 11 10 9 35 35 H 1.09011 * 109.47337 * 185.19920 * 11 10 9 36 36 H 0.96698 * 114.00678 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.49997 * 61.29159 * 13 10 9 38 38 H 1.09002 * 109.49637 * 181.39344 * 13 10 9 39 39 H 1.09005 * 109.58500 * 185.57421 * 14 13 10 40 40 H 1.08998 * 109.58537 * 65.15514 * 14 13 10 41 41 H 0.96997 * 119.99681 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.58464 * 186.60317 * 24 15 14 43 43 H 1.09002 * 109.58659 * 66.17605 * 24 15 14 44 44 H 1.08999 * 109.50069 * 178.60336 * 25 10 9 45 45 H 1.08995 * 109.49968 * 298.70339 * 25 10 9 46 46 H 1.07995 * 119.81256 * 179.70243 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1842 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1134 0.0005 7 6 5.7437 -0.1848 0.0005 8 8 6.4022 0.8378 0.0010 9 7 6.3601 -1.3834 0.0010 10 6 7.8194 -1.4564 0.1071 11 6 8.4537 -0.6710 -1.0426 12 8 7.9442 -1.1538 -2.2874 13 6 8.2635 -2.9190 0.0314 14 6 7.5993 -3.7092 1.1634 15 7 7.9038 -3.0514 2.4414 16 6 8.4595 -3.7577 3.4745 17 1 9.0979 -4.6040 3.2684 18 6 8.2023 -3.3858 4.7870 19 7 7.2149 -2.5577 5.0549 20 14 9.2573 -4.0608 6.1729 21 1 10.6716 -3.6619 5.9577 22 1 8.7811 -3.5140 7.4688 23 1 9.1585 -5.5422 6.1939 24 6 7.6002 -1.6215 2.5899 25 6 8.2644 -0.8547 1.4420 26 6 3.5076 -1.2618 -0.0058 27 7 2.1664 -1.1847 0.0000 28 1 1.6510 -2.0064 0.0003 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6137 2.1083 0.0004 33 1 5.8375 -2.1975 -0.0688 34 1 8.2123 0.3866 -0.9368 35 1 9.5357 -0.8010 -1.0181 36 1 8.3034 -0.7000 -3.0620 37 1 7.9668 -3.3401 -0.9291 38 1 9.3471 -2.9760 0.1351 39 1 7.9878 -4.7276 1.1748 40 1 6.5203 -3.7293 1.0107 41 1 7.0354 -2.2976 5.9719 42 1 7.9893 -1.2625 3.5426 43 1 6.5212 -1.4714 2.5535 44 1 9.3479 -0.9312 1.5324 45 1 7.9683 0.1934 1.4854 46 1 3.9899 -2.2281 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505389798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:37 Heat of formation + Delta-G solvation = -58.563350 kcal Electronic energy + Delta-G solvation = -30542.568082 eV Core-core repulsion = 26433.574850 eV Total energy + Delta-G solvation = -4108.993232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.02670 -39.75761 -37.76703 -36.91959 -36.00123 -33.97047 -33.51388 -32.01214 -31.22800 -30.24424 -29.69888 -28.06251 -26.61913 -24.17519 -23.82463 -22.44231 -22.21276 -21.46781 -20.53763 -18.83014 -18.65346 -17.37405 -17.07830 -16.67522 -16.20599 -16.02098 -15.44127 -14.95668 -14.74746 -14.59584 -14.42296 -13.96866 -13.91548 -13.48361 -13.35580 -13.24626 -13.13136 -13.01491 -12.95556 -12.80877 -12.56475 -12.33938 -12.21505 -11.78625 -11.38222 -11.18239 -10.85078 -10.70403 -10.36835 -10.25243 -10.01867 -9.92762 -9.66143 -9.59013 -9.45685 -9.29474 -8.74873 -8.45290 -8.42095 -8.02854 -6.63600 -5.77151 -3.22620 0.87912 1.28376 2.56463 3.30996 3.38239 3.44783 3.45597 3.57642 4.05533 4.09263 4.40728 4.49824 4.58953 4.62259 4.86279 4.96506 4.98691 5.23720 5.35747 5.38002 5.43395 5.50571 5.59121 5.63832 5.74479 5.81189 5.85378 6.06286 6.16831 6.29012 6.33698 6.42405 6.55488 6.60454 6.68762 6.70377 6.71491 6.84154 6.93401 7.17782 7.43269 7.73596 7.80776 7.89976 8.09550 8.27371 8.47277 8.86312 9.22756 9.85490 10.42904 11.30515 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.003986 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.823011 B = 7022.280512 C = 8290.401453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.154 3.846 3 C -0.272 4.272 4 C 0.408 3.592 5 O -0.480 6.480 6 C -0.288 4.288 7 C 0.578 3.422 8 O -0.517 6.517 9 N -0.705 5.705 10 C 0.198 3.802 11 C 0.061 3.939 12 O -0.569 6.569 13 C -0.134 4.134 14 C 0.147 3.853 15 N -0.591 5.591 16 C -0.256 4.256 17 H 0.064 0.936 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.181 3.819 25 C -0.152 4.152 26 C 0.171 3.829 27 N -0.579 5.579 28 H 0.420 0.580 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.389 0.611 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.369 0.631 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.011 0.989 41 H 0.254 0.746 42 H 0.086 0.914 43 H 0.018 0.982 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.168 -0.396 -14.071 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.047 3.953 3 C -0.296 4.296 4 C 0.294 3.706 5 O -0.361 6.361 6 C -0.299 4.299 7 C 0.365 3.635 8 O -0.393 6.393 9 N -0.357 5.357 10 C 0.112 3.888 11 C -0.018 4.018 12 O -0.373 6.373 13 C -0.174 4.174 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.081 0.919 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.056 3.944 25 C -0.192 4.192 26 C 0.040 3.960 27 N -0.185 5.185 28 H 0.256 0.744 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.167 0.833 33 H 0.224 0.776 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.214 0.786 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.722 0.611 -13.450 18.524 hybrid contribution 0.342 -0.910 0.454 1.073 sum -12.380 -0.299 -12.996 17.951 Atomic orbital electron populations 1.21082 0.88066 1.04882 1.04132 1.20250 0.94677 0.85612 0.94805 1.22249 0.96408 0.97205 1.13756 1.18154 0.88182 0.87987 0.76270 1.90811 1.69977 1.33238 1.42070 1.22628 0.94939 0.94920 1.17443 1.17325 0.85803 0.83731 0.76616 1.90740 1.65482 1.34245 1.48843 1.45759 1.07405 1.07356 1.75170 1.20240 0.78948 0.95944 0.93631 1.22838 0.96018 0.99444 0.83495 1.86429 1.71092 1.64185 1.15601 1.22271 1.01660 0.93834 0.99618 1.20870 0.95405 0.95189 0.86489 1.44053 1.72522 1.04956 1.09830 1.19124 1.22032 1.12422 0.84949 0.91864 1.25081 0.96916 0.99785 0.97593 1.70002 1.28493 1.37334 1.18743 0.86379 0.80321 0.78509 0.81569 1.20996 1.21660 1.20950 1.20661 0.95925 0.82343 0.95508 1.22567 1.00944 1.00755 0.94954 1.22231 0.82499 1.00165 0.91113 1.40671 1.05955 1.08854 1.63052 0.74431 0.89394 0.90474 0.88839 0.83271 0.77602 0.91089 0.93929 0.78566 0.91839 0.90993 0.92594 0.97176 0.93582 0.89600 0.96346 0.91955 0.91154 0.81463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.03 36.01 0.36 -0.09 16 2 C 0.15 1.22 6.79 -82.13 -0.56 0.66 16 3 C -0.27 -3.28 9.57 -39.47 -0.38 -3.66 16 4 C 0.41 7.16 6.96 -34.68 -0.24 6.92 16 5 O -0.48 -10.76 16.41 -15.18 -0.25 -11.01 16 6 C -0.29 -4.63 6.05 -102.71 -0.62 -5.25 16 7 C 0.58 11.06 7.18 -12.58 -0.09 10.97 16 8 O -0.52 -11.88 11.88 -14.76 -0.18 -12.06 16 9 N -0.70 -11.97 3.83 -48.67 -0.19 -12.16 16 10 C 0.20 3.58 0.44 -131.78 -0.06 3.52 16 11 C 0.06 1.01 5.57 37.16 0.21 1.22 16 12 O -0.57 -8.48 12.94 -35.23 -0.46 -8.93 16 13 C -0.13 -2.31 4.88 -26.61 -0.13 -2.44 16 14 C 0.15 2.90 6.24 -3.71 -0.02 2.87 16 15 N -0.59 -14.41 2.99 -172.32 -0.52 -14.93 16 16 C -0.26 -6.90 9.58 -15.06 -0.14 -7.04 16 17 H 0.06 1.67 7.87 -52.49 -0.41 1.26 16 18 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16 19 N -0.90 -26.14 11.15 55.49 0.62 -25.52 16 20 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.18 4.44 5.02 -3.71 -0.02 4.42 16 25 C -0.15 -3.22 4.70 -26.61 -0.13 -3.34 16 26 C 0.17 1.78 10.73 -16.54 -0.18 1.60 16 27 N -0.58 -4.04 5.16 -9.00 -0.05 -4.09 16 28 H 0.42 1.19 8.70 -40.82 -0.35 0.83 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.15 8.12 -51.93 -0.42 -0.27 16 31 H 0.09 0.32 8.05 -51.93 -0.42 -0.10 16 32 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.39 5.65 5.30 -40.82 -0.22 5.44 16 34 H 0.07 1.34 6.06 -51.93 -0.31 1.03 16 35 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 36 H 0.37 3.93 9.12 45.56 0.42 4.34 16 37 H 0.06 0.98 7.79 -51.93 -0.40 0.58 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 40 H 0.01 0.19 6.90 -51.93 -0.36 -0.16 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 42 H 0.09 2.41 6.08 -51.93 -0.32 2.09 16 43 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.58 6.52 -51.93 -0.34 1.25 16 46 H 0.17 1.30 6.43 -52.49 -0.34 0.97 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -39.56 365.51 -8.15 -47.71 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.54 Total: 8.45 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -2.08 Total: 10.42 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.13 Total: -56.70 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.88 Total: -32.00 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.56 -8.15 -47.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505389798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.852 kcal (2) G-P(sol) polarization free energy of solvation -39.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds