Wall clock time and date at job start Tue Mar 31 2020 19:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34867 * 119.09915 * 2 1 4 4 C 1.41667 * 119.33387 * 179.97438 * 3 2 1 5 5 O 1.22093 * 121.06266 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86557 * 0.02562 * 4 3 2 7 7 C 1.47293 * 120.88067 * 179.97438 * 6 4 3 8 8 O 1.21624 * 119.99992 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99791 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99698 * 184.79525 * 9 7 6 11 11 C 1.52997 * 109.44937 * 302.07151 * 10 9 7 12 12 O 1.42901 * 109.47304 * 305.19317 * 11 10 9 13 13 C 1.53041 * 109.45869 * 182.10759 * 10 9 7 14 14 C 1.53195 * 109.30837 * 301.34065 * 13 10 9 15 15 N 1.46926 * 108.77775 * 305.36668 * 14 13 10 16 16 C 1.36934 * 120.62768 * 233.58816 * 15 14 13 17 17 H 1.07998 * 120.00421 * 29.40673 * 16 15 14 18 18 C 1.38820 * 119.99975 * 209.40695 * 16 15 14 19 19 N 1.31620 * 119.99606 * 14.72908 * 18 16 15 20 20 Si 1.86799 * 120.00027 * 194.72911 * 18 16 15 21 21 H 1.48507 * 109.46918 * 60.00172 * 20 18 16 22 22 H 1.48496 * 109.46898 * 179.97438 * 20 18 16 23 23 H 1.48488 * 109.47426 * 300.00043 * 20 18 16 24 24 C 1.46924 * 118.74031 * 53.60900 * 15 14 13 25 25 C 1.53041 * 109.46216 * 62.03610 * 10 9 7 26 26 C 1.37989 * 118.23683 * 0.26946 * 6 4 3 27 27 N 1.34344 * 120.36879 * 359.42389 * 26 6 4 28 28 H 0.96999 * 118.80362 * 180.33069 * 27 26 6 29 29 H 1.09001 * 109.47096 * 89.99696 * 1 2 3 30 30 H 1.08999 * 109.47201 * 210.00085 * 1 2 3 31 31 H 1.08996 * 109.46805 * 329.99665 * 1 2 3 32 32 H 1.07999 * 120.33328 * 0.02676 * 3 2 1 33 33 H 0.96996 * 119.99867 * 4.79139 * 9 7 6 34 34 H 1.08996 * 109.47303 * 65.19717 * 11 10 9 35 35 H 1.09011 * 109.47337 * 185.19920 * 11 10 9 36 36 H 0.96698 * 114.00678 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.49997 * 61.29159 * 13 10 9 38 38 H 1.09002 * 109.49637 * 181.39344 * 13 10 9 39 39 H 1.09005 * 109.58500 * 185.57421 * 14 13 10 40 40 H 1.08998 * 109.58537 * 65.15514 * 14 13 10 41 41 H 0.96997 * 119.99681 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.58464 * 186.60317 * 24 15 14 43 43 H 1.09002 * 109.58659 * 66.17605 * 24 15 14 44 44 H 1.08999 * 109.50069 * 178.60336 * 25 10 9 45 45 H 1.08995 * 109.49968 * 298.70339 * 25 10 9 46 46 H 1.07995 * 119.81256 * 179.70243 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1842 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1134 0.0005 7 6 5.7437 -0.1848 0.0005 8 8 6.4022 0.8378 0.0010 9 7 6.3601 -1.3834 0.0010 10 6 7.8194 -1.4564 0.1071 11 6 8.4537 -0.6710 -1.0426 12 8 7.9442 -1.1538 -2.2874 13 6 8.2635 -2.9190 0.0314 14 6 7.5993 -3.7092 1.1634 15 7 7.9038 -3.0514 2.4414 16 6 8.4595 -3.7577 3.4745 17 1 9.0979 -4.6040 3.2684 18 6 8.2023 -3.3858 4.7870 19 7 7.2149 -2.5577 5.0549 20 14 9.2573 -4.0608 6.1729 21 1 10.6716 -3.6619 5.9577 22 1 8.7811 -3.5140 7.4688 23 1 9.1585 -5.5422 6.1939 24 6 7.6002 -1.6215 2.5899 25 6 8.2644 -0.8547 1.4420 26 6 3.5076 -1.2618 -0.0058 27 7 2.1664 -1.1847 0.0000 28 1 1.6510 -2.0064 0.0003 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6137 2.1083 0.0004 33 1 5.8375 -2.1975 -0.0688 34 1 8.2123 0.3866 -0.9368 35 1 9.5357 -0.8010 -1.0181 36 1 8.3034 -0.7000 -3.0620 37 1 7.9668 -3.3401 -0.9291 38 1 9.3471 -2.9760 0.1351 39 1 7.9878 -4.7276 1.1748 40 1 6.5203 -3.7293 1.0107 41 1 7.0354 -2.2976 5.9719 42 1 7.9893 -1.2625 3.5426 43 1 6.5212 -1.4714 2.5535 44 1 9.3479 -0.9312 1.5324 45 1 7.9683 0.1934 1.4854 46 1 3.9899 -2.2281 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505389798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:36 Heat of formation + Delta-G solvation = -90.356727 kcal Electronic energy + Delta-G solvation = -30543.946746 eV Core-core repulsion = 26433.574850 eV Total energy + Delta-G solvation = -4110.371896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07685 -41.11974 -39.06215 -38.39113 -37.39058 -35.58858 -34.51127 -33.48878 -32.64664 -31.76211 -31.33058 -28.87460 -28.25569 -25.62684 -25.16117 -23.97383 -23.48899 -22.72583 -22.08530 -20.22422 -19.91473 -18.81615 -18.36555 -18.03949 -17.35735 -17.17070 -16.86084 -16.46070 -16.20363 -15.89145 -15.76802 -15.57106 -15.15023 -15.13463 -14.81768 -14.50685 -14.35480 -14.22397 -13.93410 -13.84714 -13.66662 -13.38330 -13.32079 -13.18018 -13.02469 -12.98033 -12.57249 -12.45527 -12.24431 -12.04575 -11.81463 -11.43489 -11.33792 -11.12038 -10.60683 -10.51977 -10.42961 -10.13030 -9.89208 -9.14850 -8.63043 -7.84475 -5.32033 -0.13882 0.36301 1.46970 1.50865 1.56221 1.79346 2.01809 2.26363 2.52631 2.87085 3.28066 3.33767 3.36252 3.65362 3.70545 3.73561 3.91219 3.99800 4.05081 4.25075 4.30984 4.43970 4.49762 4.52735 4.66468 4.74633 4.75544 4.77797 4.83061 4.85876 4.99081 5.04807 5.17519 5.19271 5.20077 5.32953 5.36344 5.47354 5.65142 5.69045 5.70395 5.77116 6.11411 6.41312 6.77701 6.87808 7.12570 7.16564 7.50296 7.88155 8.40935 9.21042 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.003986 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.823011 B = 7022.280512 C = 8290.401453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.192 3.808 3 C -0.307 4.307 4 C 0.384 3.616 5 O -0.565 6.565 6 C -0.350 4.350 7 C 0.571 3.429 8 O -0.570 6.570 9 N -0.695 5.695 10 C 0.198 3.802 11 C 0.073 3.927 12 O -0.570 6.570 13 C -0.118 4.118 14 C 0.143 3.857 15 N -0.605 5.605 16 C -0.261 4.261 17 H 0.071 0.929 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.282 1.282 22 H -0.299 1.299 23 H -0.270 1.270 24 C 0.199 3.801 25 C -0.140 4.140 26 C 0.220 3.780 27 N -0.549 5.549 28 H 0.449 0.551 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.403 0.597 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.390 0.610 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.247 0.753 42 H 0.042 0.958 43 H -0.003 1.003 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.475 -4.338 -15.752 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 C -0.330 4.330 4 C 0.277 3.723 5 O -0.454 6.454 6 C -0.361 4.361 7 C 0.361 3.639 8 O -0.450 6.450 9 N -0.347 5.347 10 C 0.112 3.888 11 C -0.006 4.006 12 O -0.377 6.377 13 C -0.157 4.157 14 C 0.018 3.982 15 N -0.328 5.328 16 C -0.391 4.391 17 H 0.089 0.911 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.209 1.209 22 H -0.225 1.225 23 H -0.195 1.195 24 C 0.072 3.928 25 C -0.181 4.181 26 C 0.084 3.916 27 N -0.156 5.156 28 H 0.291 0.709 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.174 0.826 33 H 0.240 0.760 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.238 0.762 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.098 -3.442 -15.186 21.689 hybrid contribution 0.884 0.165 0.909 1.279 sum -14.214 -3.277 -14.277 20.411 Atomic orbital electron populations 1.21298 0.83662 1.06732 1.06196 1.20829 0.96950 0.84268 0.89679 1.22124 0.93921 0.99647 1.17331 1.18961 0.90450 0.87743 0.75167 1.90753 1.71774 1.35485 1.47372 1.22342 0.93858 0.96418 1.23444 1.17853 0.87207 0.83377 0.75511 1.90709 1.66901 1.36038 1.51336 1.45592 1.07012 1.07420 1.74692 1.20132 0.79815 0.96669 0.92223 1.22501 0.96651 0.97448 0.84004 1.86348 1.71440 1.64264 1.15638 1.22127 1.01327 0.92279 0.99946 1.21095 0.96828 0.95565 0.84755 1.44219 1.72759 1.04755 1.11075 1.19500 1.21686 1.12154 0.85748 0.91122 1.25805 0.98115 1.00583 0.99903 1.70169 1.30319 1.39116 1.18497 0.85402 0.78559 0.78420 0.78421 1.20862 1.22539 1.19528 1.20239 0.94492 0.83370 0.94655 1.22339 1.00432 0.99109 0.96178 1.22527 0.83506 0.99574 0.85946 1.40935 1.05121 1.10251 1.59267 0.70864 0.86878 0.87377 0.88282 0.82636 0.76026 0.94015 0.92305 0.76170 0.88759 0.91122 0.91688 0.95249 0.94409 0.93926 0.98459 0.92074 0.93575 0.77877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.23 10.03 71.24 0.71 0.48 16 2 C 0.19 2.38 6.79 41.21 0.28 2.66 16 3 C -0.31 -7.44 9.57 22.34 0.21 -7.22 16 4 C 0.38 14.49 6.96 25.44 0.18 14.66 16 5 O -0.57 -28.37 16.41 13.52 0.22 -28.15 16 6 C -0.35 -11.49 6.05 -18.63 -0.11 -11.61 16 7 C 0.57 22.86 7.18 86.62 0.62 23.49 16 8 O -0.57 -28.54 11.88 15.03 0.18 -28.36 16 9 N -0.69 -23.27 3.83 -426.15 -1.63 -24.90 16 10 C 0.20 7.06 0.44 3.63 0.00 7.07 16 11 C 0.07 2.41 5.57 71.98 0.40 2.81 16 12 O -0.57 -15.88 12.94 -148.98 -1.93 -17.81 16 13 C -0.12 -3.72 4.88 30.67 0.15 -3.57 16 14 C 0.14 5.25 6.24 86.36 0.54 5.79 16 15 N -0.60 -29.30 2.99 -699.09 -2.09 -31.39 16 16 C -0.26 -13.95 9.58 84.04 0.81 -13.15 16 17 H 0.07 3.62 7.87 -2.91 -0.02 3.60 16 18 C -0.05 -2.70 4.96 84.86 0.42 -2.28 16 19 N -0.93 -55.76 11.15 21.65 0.24 -55.52 16 20 Si 0.96 44.80 29.58 68.60 2.03 46.83 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 C 0.20 10.11 5.02 86.36 0.43 10.54 16 25 C -0.14 -6.20 4.70 30.67 0.14 -6.05 16 26 C 0.22 3.91 10.73 84.25 0.90 4.82 16 27 N -0.55 -5.09 5.16 -182.38 -0.94 -6.03 16 28 H 0.45 -0.51 8.70 -92.71 -0.81 -1.31 16 29 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.11 -0.33 8.12 -2.39 -0.02 -0.35 16 31 H 0.10 0.24 8.05 -2.39 -0.02 0.23 16 32 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.40 10.68 5.30 -92.71 -0.49 10.19 16 34 H 0.04 1.66 6.06 -2.39 -0.01 1.64 16 35 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.39 7.52 9.12 -74.06 -0.68 6.84 16 37 H 0.09 2.49 7.79 -2.39 -0.02 2.47 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.29 7.93 -2.38 -0.02 2.27 16 40 H 0.03 0.99 6.90 -2.39 -0.02 0.97 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.04 2.52 6.08 -2.39 -0.01 2.51 16 43 H 0.00 -0.14 7.74 -2.39 -0.02 -0.16 16 44 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.05 2.25 6.52 -2.39 -0.02 2.24 16 46 H 0.20 2.17 6.43 -2.91 -0.02 2.15 16 Total: -1.00 -97.77 365.51 0.86 -96.91 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.92 Total: 19.99 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 5.69 Total: 28.42 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -4.42 Total: -117.84 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -1.53 Total: -74.32 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -97.77 0.86 -96.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505389798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.554 kcal (2) G-P(sol) polarization free energy of solvation -97.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds