Wall clock time and date at job start Tue Mar 31 2020 19:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35133 * 126.43967 * 2 1 4 4 O 1.33933 * 108.76327 * 179.75620 * 3 2 1 5 5 C 1.34911 * 109.38613 * 0.40238 * 4 3 2 6 6 C 1.46656 * 125.98566 * 179.86275 * 5 4 3 7 7 O 1.21699 * 119.99964 * 174.60431 * 6 5 4 8 8 N 1.34775 * 120.00519 * 354.60837 * 6 5 4 9 9 C 1.46500 * 120.00557 * 174.89445 * 8 6 5 10 10 C 1.46503 * 119.99356 * 355.16256 * 8 6 5 11 11 C 1.53782 * 113.61578 * 274.75863 * 10 8 6 12 12 C 1.54053 * 86.98648 * 270.83816 * 11 10 8 13 13 N 1.46898 * 113.69914 * 220.00950 * 12 11 10 14 14 C 1.46897 * 111.00008 * 252.53191 * 13 12 11 15 15 C 1.50703 * 109.47114 * 179.97438 * 14 13 12 16 16 O 1.21294 * 120.00046 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00089 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00110 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99922 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00163 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99848 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00041 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47227 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47403 * 120.00064 * 22 20 18 25 25 H 1.48500 * 109.47103 * 240.00005 * 22 20 18 26 26 C 1.53780 * 87.07742 * 334.56889 * 12 11 10 27 27 C 1.36542 * 108.02571 * 359.59689 * 5 4 3 28 28 H 1.09008 * 109.47204 * 270.00177 * 1 2 3 29 29 H 1.08995 * 109.47442 * 29.99691 * 1 2 3 30 30 H 1.08996 * 109.46939 * 150.00350 * 1 2 3 31 31 H 1.07999 * 125.61895 * 359.96110 * 3 2 1 32 32 H 1.08996 * 109.47441 * 95.42105 * 9 8 6 33 33 H 1.09001 * 109.46864 * 215.42528 * 9 8 6 34 34 H 1.09003 * 109.46699 * 335.42075 * 9 8 6 35 35 H 1.08999 * 112.84929 * 45.96097 * 10 8 6 36 36 H 1.08991 * 113.61743 * 25.43200 * 11 10 8 37 37 H 1.09003 * 113.61343 * 156.33711 * 11 10 8 38 38 H 1.09001 * 113.61333 * 89.11338 * 12 11 10 39 39 H 1.00903 * 110.99867 * 128.58249 * 13 12 11 40 40 H 1.08998 * 109.47615 * 299.99765 * 14 13 12 41 41 H 1.09007 * 109.47090 * 60.00411 * 14 13 12 42 42 H 0.97004 * 119.99749 * 359.97438 * 17 15 14 43 43 H 0.96996 * 119.99835 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.61769 * 270.87516 * 26 12 11 45 45 H 1.09000 * 113.61621 * 139.97236 * 26 12 11 46 46 H 1.07995 * 126.64818 * 180.25856 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 0.0054 5 6 3.6260 -0.6680 0.0000 6 6 4.8379 -1.4940 0.0005 7 8 4.7495 -2.7041 0.0943 8 7 6.0496 -0.9129 -0.1030 9 6 7.2636 -1.7251 0.0097 10 6 6.1526 0.5320 -0.3223 11 6 6.0612 0.9385 -1.8026 12 6 7.5911 0.7669 -1.8600 13 7 8.2714 1.7975 -2.6556 14 6 8.7544 1.2463 -3.9287 15 6 9.4445 2.3304 -4.7158 16 8 9.5263 3.4518 -4.2608 17 7 9.9707 2.0539 -5.9254 18 6 10.5990 3.0400 -6.6413 19 1 10.6718 4.0385 -6.2361 20 6 11.1420 2.7549 -7.8881 21 7 11.0537 1.5398 -8.3809 22 14 11.9973 4.0987 -8.8638 23 1 11.9629 5.3678 -8.0937 24 1 13.4087 3.7087 -9.1114 25 1 11.3010 4.2876 -10.1617 26 6 7.6006 1.0494 -0.3484 27 6 2.3408 -1.1291 0.0001 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9770 2.1146 -0.0006 32 1 7.6080 -2.0040 -0.9862 33 1 8.0397 -1.1502 0.5148 34 1 7.0463 -2.6255 0.5844 35 1 5.4952 1.1070 0.3298 36 1 5.5168 0.2232 -2.4190 37 1 5.7312 1.9663 -1.9536 38 1 7.9077 -0.2439 -2.1173 39 1 9.0261 2.2174 -2.1339 40 1 9.4572 0.4370 -3.7309 41 1 7.9104 0.8627 -4.5021 42 1 9.9056 1.1570 -6.2891 43 1 11.4325 1.3409 -9.2514 44 1 7.6907 2.1074 -0.1025 45 1 8.2979 0.4235 0.2084 46 1 2.0267 -2.1624 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508123736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:26 Heat of formation + Delta-G solvation = -18.079842 kcal Electronic energy + Delta-G solvation = -28405.803794 eV Core-core repulsion = 24298.566059 eV Total energy + Delta-G solvation = -4107.237735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.02897 -40.56161 -38.82251 -38.04453 -35.16896 -34.45350 -33.91832 -32.65288 -31.19866 -31.05870 -28.61725 -27.22936 -26.77352 -25.64427 -24.55490 -23.47263 -22.39927 -21.35190 -20.57630 -19.32377 -18.98408 -17.88809 -17.32281 -17.03802 -16.71123 -16.37844 -16.25539 -15.52384 -15.28450 -15.11793 -14.62645 -14.42989 -14.16808 -13.85274 -13.67445 -13.55143 -13.44755 -13.31982 -13.11123 -12.93646 -12.78469 -12.45351 -12.08166 -11.97121 -11.96130 -11.88837 -11.59948 -11.40277 -11.07354 -10.71038 -10.61475 -10.41850 -10.34985 -10.22850 -10.02160 -9.52811 -9.07348 -8.77877 -8.45574 -8.09591 -7.96776 -6.42401 -3.83317 0.77784 1.99108 2.32847 2.72866 2.92079 3.15736 3.26327 3.33551 3.89951 4.08129 4.10045 4.20150 4.34815 4.39333 4.44945 4.61438 4.73933 4.83094 4.93277 5.03777 5.18199 5.19462 5.24487 5.25782 5.29035 5.34800 5.45847 5.48617 5.58953 5.61713 5.67429 5.68151 5.78056 5.84866 5.93130 5.99619 6.06300 6.09607 6.18915 6.30383 6.56673 7.00417 7.24508 7.54714 7.64182 7.72159 8.05784 8.60350 9.17149 9.53636 10.04824 10.75396 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.002064 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.986047 B =13564.455906 C =14117.957863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.196 4.196 3 C -0.010 4.010 4 O -0.151 6.151 5 C -0.073 4.073 6 C 0.605 3.395 7 O -0.524 6.524 8 N -0.589 5.589 9 C 0.077 3.923 10 C 0.107 3.893 11 C -0.130 4.130 12 C 0.061 3.939 13 N -0.655 5.655 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.147 4.147 27 C -0.118 4.118 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.208 0.792 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.351 0.649 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -5.910 19.158 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.197 4.197 3 C -0.080 4.080 4 O -0.046 6.046 5 C -0.125 4.125 6 C 0.393 3.607 7 O -0.402 6.402 8 N -0.321 5.321 9 C -0.065 4.065 10 C 0.004 3.996 11 C -0.169 4.169 12 C -0.050 4.050 13 N -0.287 5.287 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.185 4.185 27 C -0.139 4.139 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.225 0.775 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.171 0.829 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.637 -5.443 19.051 25.872 hybrid contribution 0.992 -0.516 -0.690 1.314 sum -15.644 -5.959 18.361 24.847 Atomic orbital electron populations 1.20183 0.88684 1.02934 1.02257 1.20478 0.97697 0.92387 1.09154 1.24313 0.80433 1.00114 1.03161 1.84286 1.28592 1.21440 1.70327 1.21888 0.95802 0.80821 1.13957 1.16553 0.81183 0.86088 0.76865 1.90877 1.85671 1.12468 1.51180 1.47457 1.05790 1.08269 1.70571 1.21842 0.86171 0.95917 1.02539 1.22170 0.98963 0.79675 0.98841 1.23543 0.96362 1.02877 0.94157 1.23157 0.95555 0.94551 0.91739 1.60210 1.34105 1.29825 1.04579 1.21733 0.98793 0.95807 0.91961 1.19816 0.84487 0.89516 0.83547 1.90519 1.62816 1.23044 1.70427 1.41882 1.49836 1.12862 1.15493 1.19755 1.31186 0.93086 0.98795 0.87856 1.25276 0.98090 0.97371 0.97307 1.69624 1.46105 1.19270 1.19292 0.85794 0.78612 0.80657 0.79250 1.19212 1.20782 1.20731 1.23632 0.95120 1.02967 0.96788 1.21822 0.90564 1.00512 1.01018 0.91334 0.91376 0.91316 0.77499 0.92066 0.90301 0.90020 0.87549 0.91719 0.87871 0.91058 0.82898 0.93905 0.89718 0.77467 0.91917 0.87523 0.90320 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.39 36.01 0.37 -0.08 16 2 C -0.20 -1.59 6.14 -104.93 -0.64 -2.23 16 3 C -0.01 -0.08 12.00 29.63 0.36 0.28 16 4 O -0.15 -1.45 7.20 5.00 0.04 -1.42 16 5 C -0.07 -0.81 6.83 -36.80 -0.25 -1.06 16 6 C 0.60 7.54 7.63 -12.86 -0.10 7.44 16 7 O -0.52 -7.85 16.42 5.19 0.09 -7.77 16 8 N -0.59 -6.24 3.03 -174.55 -0.53 -6.77 16 9 C 0.08 0.69 9.28 59.85 0.56 1.25 16 10 C 0.11 1.04 3.26 -67.11 -0.22 0.82 16 11 C -0.13 -1.48 7.49 -25.78 -0.19 -1.67 16 12 C 0.06 0.71 3.79 -66.76 -0.25 0.46 16 13 N -0.65 -10.16 6.19 -106.98 -0.66 -10.83 16 14 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 15 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 16 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 17 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 22 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.15 -1.35 6.89 -25.92 -0.18 -1.53 16 27 C -0.12 -1.20 10.58 -39.39 -0.42 -1.61 16 28 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.06 0.55 7.31 -51.93 -0.38 0.17 16 33 H 0.08 0.56 5.73 -51.93 -0.30 0.26 16 34 H 0.08 0.76 7.34 -51.93 -0.38 0.38 16 35 H 0.11 0.99 5.94 -51.93 -0.31 0.68 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.84 6.60 -51.93 -0.34 0.50 16 39 H 0.35 5.52 8.25 -39.29 -0.32 5.20 16 40 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.08 1.43 8.14 -51.92 -0.42 1.00 16 42 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.08 0.62 5.70 -51.93 -0.30 0.32 16 46 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -33.73 382.58 -7.29 -41.01 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.39 Total: 12.76 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.33 Total: 5.18 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.52 Total: -55.91 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.21 Total: -24.86 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.73 -7.29 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508123736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.935 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds