Wall clock time and date at job start Tue Mar 31 2020 19:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35133 * 126.43967 * 2 1 4 4 O 1.33933 * 108.76327 * 179.75620 * 3 2 1 5 5 C 1.34911 * 109.38613 * 0.40238 * 4 3 2 6 6 C 1.46656 * 125.98566 * 179.86275 * 5 4 3 7 7 O 1.21699 * 119.99964 * 174.60431 * 6 5 4 8 8 N 1.34775 * 120.00519 * 354.60837 * 6 5 4 9 9 C 1.46500 * 120.00557 * 174.89445 * 8 6 5 10 10 C 1.46503 * 119.99356 * 355.16256 * 8 6 5 11 11 C 1.53782 * 113.61578 * 274.75863 * 10 8 6 12 12 C 1.54053 * 86.98648 * 270.83816 * 11 10 8 13 13 N 1.46898 * 113.69914 * 220.00950 * 12 11 10 14 14 C 1.46897 * 111.00008 * 252.53191 * 13 12 11 15 15 C 1.50703 * 109.47114 * 179.97438 * 14 13 12 16 16 O 1.21294 * 120.00046 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00089 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00110 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99922 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00163 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99848 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00041 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47227 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47403 * 120.00064 * 22 20 18 25 25 H 1.48500 * 109.47103 * 240.00005 * 22 20 18 26 26 C 1.53780 * 87.07742 * 334.56889 * 12 11 10 27 27 C 1.36542 * 108.02571 * 359.59689 * 5 4 3 28 28 H 1.09008 * 109.47204 * 270.00177 * 1 2 3 29 29 H 1.08995 * 109.47442 * 29.99691 * 1 2 3 30 30 H 1.08996 * 109.46939 * 150.00350 * 1 2 3 31 31 H 1.07999 * 125.61895 * 359.96110 * 3 2 1 32 32 H 1.08996 * 109.47441 * 95.42105 * 9 8 6 33 33 H 1.09001 * 109.46864 * 215.42528 * 9 8 6 34 34 H 1.09003 * 109.46699 * 335.42075 * 9 8 6 35 35 H 1.08999 * 112.84929 * 45.96097 * 10 8 6 36 36 H 1.08991 * 113.61743 * 25.43200 * 11 10 8 37 37 H 1.09003 * 113.61343 * 156.33711 * 11 10 8 38 38 H 1.09001 * 113.61333 * 89.11338 * 12 11 10 39 39 H 1.00903 * 110.99867 * 128.58249 * 13 12 11 40 40 H 1.08998 * 109.47615 * 299.99765 * 14 13 12 41 41 H 1.09007 * 109.47090 * 60.00411 * 14 13 12 42 42 H 0.97004 * 119.99749 * 359.97438 * 17 15 14 43 43 H 0.96996 * 119.99835 * 179.97438 * 21 20 18 44 44 H 1.08995 * 113.61769 * 270.87516 * 26 12 11 45 45 H 1.09000 * 113.61621 * 139.97236 * 26 12 11 46 46 H 1.07995 * 126.64818 * 180.25856 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 0.0054 5 6 3.6260 -0.6680 0.0000 6 6 4.8379 -1.4940 0.0005 7 8 4.7495 -2.7041 0.0943 8 7 6.0496 -0.9129 -0.1030 9 6 7.2636 -1.7251 0.0097 10 6 6.1526 0.5320 -0.3223 11 6 6.0612 0.9385 -1.8026 12 6 7.5911 0.7669 -1.8600 13 7 8.2714 1.7975 -2.6556 14 6 8.7544 1.2463 -3.9287 15 6 9.4445 2.3304 -4.7158 16 8 9.5263 3.4518 -4.2608 17 7 9.9707 2.0539 -5.9254 18 6 10.5990 3.0400 -6.6413 19 1 10.6718 4.0385 -6.2361 20 6 11.1420 2.7549 -7.8881 21 7 11.0537 1.5398 -8.3809 22 14 11.9973 4.0987 -8.8638 23 1 11.9629 5.3678 -8.0937 24 1 13.4087 3.7087 -9.1114 25 1 11.3010 4.2876 -10.1617 26 6 7.6006 1.0494 -0.3484 27 6 2.3408 -1.1291 0.0001 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9770 2.1146 -0.0006 32 1 7.6080 -2.0040 -0.9862 33 1 8.0397 -1.1502 0.5148 34 1 7.0463 -2.6255 0.5844 35 1 5.4952 1.1070 0.3298 36 1 5.5168 0.2232 -2.4190 37 1 5.7312 1.9663 -1.9536 38 1 7.9077 -0.2439 -2.1173 39 1 9.0261 2.2174 -2.1339 40 1 9.4572 0.4370 -3.7309 41 1 7.9104 0.8627 -4.5021 42 1 9.9056 1.1570 -6.2891 43 1 11.4325 1.3409 -9.2514 44 1 7.6907 2.1074 -0.1025 45 1 8.2979 0.4235 0.2084 46 1 2.0267 -2.1624 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508123736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:25 Heat of formation + Delta-G solvation = -42.337987 kcal Electronic energy + Delta-G solvation = -28406.855706 eV Core-core repulsion = 24298.566059 eV Total energy + Delta-G solvation = -4108.289647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.72297 -41.44173 -40.18778 -39.51815 -36.35798 -35.80371 -35.09474 -33.83523 -33.21292 -31.78348 -29.32425 -28.46450 -27.67967 -26.49037 -26.20626 -24.54440 -23.27638 -22.07925 -21.47709 -21.03818 -19.95304 -19.78409 -18.21433 -17.92747 -17.56876 -17.49545 -17.13926 -16.92505 -16.54453 -16.29240 -16.13445 -15.75897 -15.56796 -15.10563 -14.78401 -14.36953 -14.21524 -14.09119 -13.96811 -13.92738 -13.63405 -13.54706 -13.47881 -13.24544 -12.98915 -12.87625 -12.70334 -12.63512 -12.54201 -12.40545 -12.11181 -11.64276 -11.52246 -11.51965 -11.31414 -10.71850 -10.34261 -10.02558 -9.88514 -9.47737 -9.33886 -8.47498 -5.96414 0.00252 1.34343 1.36398 1.41754 1.56157 1.57136 1.94443 2.03908 2.10652 2.28708 2.94146 3.19745 3.35599 3.39865 3.46985 3.59725 3.83570 3.88294 4.05006 4.10973 4.20166 4.28657 4.36520 4.43678 4.45146 4.56012 4.59481 4.65995 4.72488 4.84272 4.85563 4.88651 4.94959 5.03507 5.06044 5.07151 5.11228 5.18489 5.36679 5.40734 5.52691 5.86397 5.91324 6.11474 6.19373 6.43644 6.58755 6.83881 7.11611 7.55099 8.09814 8.70152 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.002064 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.986047 B =13564.455906 C =14117.957863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C 0.001 3.999 4 O -0.156 6.156 5 C -0.100 4.100 6 C 0.599 3.401 7 O -0.561 6.561 8 N -0.587 5.587 9 C 0.072 3.928 10 C 0.117 3.883 11 C -0.129 4.129 12 C 0.056 3.944 13 N -0.665 5.665 14 C 0.065 3.935 15 C 0.439 3.561 16 O -0.621 6.621 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 C -0.132 4.132 27 C -0.126 4.126 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.247 0.753 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.349 0.651 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.913 -5.152 19.731 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.208 4.208 3 C -0.069 4.069 4 O -0.051 6.051 5 C -0.152 4.152 6 C 0.389 3.611 7 O -0.443 6.443 8 N -0.317 5.317 9 C -0.069 4.069 10 C 0.013 3.987 11 C -0.169 4.169 12 C -0.054 4.054 13 N -0.298 5.298 14 C -0.068 4.068 15 C 0.226 3.774 16 O -0.507 6.507 17 N -0.212 5.212 18 C -0.462 4.462 19 H 0.098 0.902 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.169 4.169 27 C -0.147 4.147 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.169 0.831 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.132 0.868 45 H 0.116 0.884 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.075 -4.702 19.630 26.439 hybrid contribution 1.038 -0.732 -0.840 1.523 sum -16.037 -5.434 18.790 25.294 Atomic orbital electron populations 1.20250 0.86819 1.03712 1.03107 1.20810 0.99040 0.91753 1.09222 1.25128 0.79430 1.01606 1.00705 1.84259 1.29812 1.20572 1.70463 1.21715 0.95577 0.81552 1.16368 1.16790 0.82040 0.85880 0.76437 1.90840 1.86305 1.13941 1.53171 1.47545 1.05778 1.08722 1.69661 1.21979 0.86112 0.96056 1.02735 1.22103 0.99600 0.79230 0.97723 1.23503 0.95855 1.02274 0.95225 1.23283 0.95188 0.93805 0.93097 1.60196 1.34008 1.31306 1.04263 1.21568 0.98950 0.93937 0.92314 1.20849 0.83189 0.90348 0.82979 1.90486 1.63926 1.25176 1.71139 1.41966 1.50379 1.12586 1.16245 1.19716 1.33360 0.92984 1.00124 0.90177 1.26079 0.98136 0.99647 0.97637 1.69685 1.46266 1.20519 1.19781 0.84847 0.77936 0.77660 0.77753 1.19647 1.19599 1.19682 1.23583 0.94941 1.03799 0.94626 1.22051 0.90953 1.01216 1.00488 0.90399 0.89732 0.91445 0.73725 0.92097 0.87913 0.90701 0.86698 0.93087 0.88312 0.90617 0.83091 0.91621 0.88746 0.77074 0.91322 0.86766 0.88391 0.82786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 71.24 0.74 0.00 16 2 C -0.21 -3.06 6.14 -20.06 -0.12 -3.18 16 3 C 0.00 0.01 12.00 67.10 0.81 0.81 16 4 O -0.16 -2.79 7.20 -5.03 -0.04 -2.82 16 5 C -0.10 -2.23 6.83 24.07 0.16 -2.06 16 6 C 0.60 15.09 7.63 86.44 0.66 15.75 16 7 O -0.56 -17.43 16.42 -4.35 -0.07 -17.50 16 8 N -0.59 -11.93 3.03 -824.36 -2.50 -14.42 16 9 C 0.07 1.22 9.28 127.77 1.19 2.40 16 10 C 0.12 2.08 3.26 45.52 0.15 2.23 16 11 C -0.13 -2.79 7.49 31.21 0.23 -2.56 16 12 C 0.06 1.22 3.79 45.53 0.17 1.40 16 13 N -0.67 -19.78 6.19 -492.37 -3.05 -22.82 16 14 C 0.06 2.21 6.01 85.56 0.51 2.73 16 15 C 0.44 20.78 7.82 87.66 0.69 21.46 16 16 O -0.62 -33.99 15.78 -3.07 -0.05 -34.04 16 17 N -0.57 -29.60 5.29 -306.98 -1.62 -31.22 16 18 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 21 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 22 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 C -0.13 -2.09 6.89 31.12 0.21 -1.88 16 27 C -0.13 -2.55 10.58 22.39 0.24 -2.31 16 28 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.25 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.06 1.03 7.31 -2.39 -0.02 1.01 16 33 H 0.10 1.20 5.73 -2.39 -0.01 1.18 16 34 H 0.07 1.38 7.34 -2.39 -0.02 1.36 16 35 H 0.12 1.92 5.94 -2.39 -0.01 1.90 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.08 1.63 6.60 -2.39 -0.02 1.61 16 39 H 0.35 10.56 8.25 -89.69 -0.74 9.82 16 40 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 41 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 42 H 0.40 19.46 7.90 -92.71 -0.73 18.72 16 43 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.10 1.21 5.70 -2.39 -0.01 1.20 16 46 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -74.18 382.58 1.47 -72.71 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.44 Total: 38.52 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.92 Total: 16.35 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -6.88 Total: -118.17 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.16 Total: -54.35 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -74.18 1.47 -72.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508123736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.372 kcal (2) G-P(sol) polarization free energy of solvation -74.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds