Wall clock time and date at job start Tue Mar 31 2020 19:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.57995 * 2 1 4 4 C 1.34510 * 106.84397 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41721 * 0.02562 * 4 3 2 6 6 C 1.34299 * 109.47607 * 359.76375 * 5 4 3 7 7 C 1.50707 * 125.78851 * 180.23596 * 6 5 4 8 8 C 1.50697 * 109.47403 * 270.16938 * 7 6 5 9 9 O 1.21285 * 119.99703 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00044 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99762 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.28781 * 35.67354 * 11 10 8 13 13 C 1.54261 * 110.32527 * 273.53990 * 11 10 8 14 14 C 1.54374 * 105.06440 * 241.11074 * 13 11 10 15 15 N 1.48559 * 104.59587 * 23.84627 * 14 13 11 16 16 C 1.46896 * 110.99913 * 200.95896 * 15 14 13 17 17 C 1.50692 * 109.47616 * 290.13199 * 16 15 14 18 18 O 1.21292 * 119.99882 * 359.97438 * 17 16 15 19 19 N 1.34785 * 120.00277 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99899 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00102 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99373 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00217 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99439 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47153 * 60.00352 * 24 22 20 26 26 H 1.48501 * 109.46986 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47688 * 300.00037 * 24 22 20 28 28 C 1.48558 * 104.22317 * 320.52436 * 15 14 13 29 29 H 1.09002 * 109.47152 * 90.02322 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02422 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02403 * 1 2 3 32 32 H 1.08004 * 126.57923 * 359.92934 * 3 2 1 33 33 H 1.08001 * 125.79264 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47062 * 30.17084 * 7 6 5 35 35 H 1.09006 * 109.46879 * 150.16582 * 7 6 5 36 36 H 0.96993 * 120.00353 * 359.97438 * 10 8 7 37 37 H 1.09003 * 110.32066 * 0.02562 * 13 11 10 38 38 H 1.08997 * 110.31982 * 122.20441 * 13 11 10 39 39 H 1.08997 * 110.41586 * 142.63102 * 14 13 11 40 40 H 1.09008 * 110.40696 * 264.95439 * 14 13 11 41 41 H 1.09000 * 109.47299 * 50.13726 * 16 15 14 42 42 H 1.09008 * 109.46655 * 170.12785 * 16 15 14 43 43 H 0.96995 * 119.99540 * 359.97438 * 19 17 16 44 44 H 0.97001 * 119.99835 * 180.02562 * 23 22 20 45 45 H 1.08996 * 110.41152 * 280.69920 * 28 15 14 46 46 H 1.09002 * 110.40800 * 158.25843 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6616 0.0004 6 6 2.3087 -1.0801 0.0049 7 6 1.8522 -2.5164 0.0112 8 6 1.7007 -3.0016 -1.4075 9 8 1.9394 -2.2546 -2.3326 10 7 1.2990 -4.2654 -1.6481 11 6 1.1513 -4.7369 -3.0273 12 1 1.9187 -4.2944 -3.6623 13 6 -0.2531 -4.3915 -3.5641 14 6 -0.9022 -5.7526 -3.8947 15 7 -0.1823 -6.7288 -3.0369 16 6 -0.3160 -8.0929 -3.5656 17 6 -1.7364 -8.5636 -3.3880 18 8 -2.5568 -7.8347 -2.8714 19 7 -2.0951 -9.7950 -3.8023 20 6 -3.3876 -10.2230 -3.6411 21 1 -4.1182 -9.5736 -3.1819 22 6 -3.7574 -11.4923 -4.0688 23 7 -2.8683 -12.2826 -4.6271 24 14 -5.5182 -12.0758 -3.8486 25 1 -6.4359 -11.1682 -4.5830 26 1 -5.6534 -13.4545 -4.3835 27 1 -5.8654 -12.0683 -2.4047 28 6 1.2325 -6.2777 -3.0788 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 2.0367 2.1691 -0.0011 33 1 4.5060 1.2924 0.0003 34 1 2.5901 -3.1298 0.5282 35 1 0.8937 -2.5907 0.5250 36 1 1.1078 -4.8627 -0.9083 37 1 -0.8323 -3.8707 -2.8016 38 1 -0.1749 -3.7808 -4.4636 39 1 -1.9634 -5.7381 -3.6460 40 1 -0.7627 -5.9943 -4.9484 41 1 -0.0612 -8.0984 -4.6253 42 1 0.3577 -8.7590 -3.0265 43 1 -1.4390 -10.3780 -4.2150 44 1 -3.1266 -13.1685 -4.9259 45 1 1.7079 -6.6026 -4.0042 46 1 1.7786 -6.6587 -2.2157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567896895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:40 Heat of formation + Delta-G solvation = -49.751108 kcal Electronic energy + Delta-G solvation = -28111.472901 eV Core-core repulsion = 24002.861797 eV Total energy + Delta-G solvation = -4108.611104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79877 -40.13619 -38.81697 -37.49770 -34.51378 -34.39789 -33.79905 -32.46836 -31.35883 -30.82628 -29.19805 -28.36249 -26.74755 -25.99238 -24.20690 -21.91307 -21.42679 -21.24211 -20.42825 -19.77184 -19.19288 -17.90594 -17.52606 -17.28679 -16.41886 -16.02083 -15.97903 -15.65034 -15.32341 -14.77096 -14.56153 -14.51139 -14.07051 -13.77960 -13.74541 -13.63533 -13.30351 -13.17559 -12.94500 -12.70728 -12.48730 -12.44136 -12.06471 -12.00277 -11.75783 -11.66681 -11.50022 -11.48452 -11.10309 -10.90943 -10.71747 -10.45102 -10.22531 -10.06876 -9.78513 -9.49755 -9.21663 -8.55779 -8.52683 -8.07393 -7.96321 -6.42747 -3.83579 1.49249 2.35949 2.44992 2.72383 3.16230 3.19049 3.24926 3.29097 3.88897 4.00521 4.24779 4.29883 4.46995 4.65240 4.68047 4.69925 4.78945 4.87960 5.00818 5.07366 5.19338 5.25000 5.26597 5.33479 5.43290 5.46979 5.56636 5.62981 5.66161 5.70437 5.75602 5.80058 5.83309 5.95342 5.98735 6.14887 6.25304 6.35812 6.40925 6.43117 6.94752 7.04917 7.13809 7.36821 7.53834 8.04680 8.06510 8.60629 9.16985 9.53221 10.05091 10.74918 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.001839 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.282769 B =15225.465020 C =15661.289966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.164 4.164 3 C -0.211 4.211 4 C -0.038 4.038 5 O -0.172 6.172 6 C 0.003 3.997 7 C -0.062 4.062 8 C 0.514 3.486 9 O -0.532 6.532 10 N -0.715 5.715 11 C 0.145 3.855 12 H 0.093 0.907 13 C -0.132 4.132 14 C 0.037 3.963 15 N -0.484 5.484 16 C 0.034 3.966 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.021 3.979 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.146 0.854 33 H 0.202 0.798 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.406 0.594 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.039 0.961 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.057 0.943 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.459 19.739 7.894 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.230 4.230 4 C -0.105 4.105 5 O -0.068 6.068 6 C -0.047 4.047 7 C -0.102 4.102 8 C 0.300 3.700 9 O -0.408 6.408 10 N -0.367 5.367 11 C 0.040 3.960 12 H 0.111 0.889 13 C -0.171 4.171 14 C -0.091 4.091 15 N -0.208 5.208 16 C -0.098 4.098 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.108 4.108 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.218 0.782 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.242 0.758 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.078 20.334 8.028 25.475 hybrid contribution -0.232 -0.924 -0.750 1.212 sum 12.846 19.411 7.279 24.388 Atomic orbital electron populations 1.20205 0.89224 1.02341 1.02377 1.20175 0.97091 0.92029 1.07212 1.21679 0.92634 0.99739 1.08931 1.23929 0.99710 0.80545 1.06350 1.83974 1.28624 1.22821 1.71395 1.21218 0.81202 0.94946 1.07383 1.20080 1.04302 0.89732 0.96047 1.20356 0.76853 0.81981 0.90835 1.90738 1.49551 1.54756 1.45712 1.46037 1.68625 1.12968 1.09079 1.21672 0.97978 0.93559 0.82801 0.88904 1.22770 0.95265 0.97604 1.01490 1.23187 1.01243 0.90099 0.94577 1.65181 1.05929 1.01063 1.48632 1.22063 0.98048 0.91116 0.98555 1.19673 0.88967 0.83515 0.84864 1.90503 1.52538 1.55379 1.47775 1.41852 1.11552 1.13112 1.53621 1.19640 0.86736 0.99012 1.37478 0.87985 1.25257 0.99860 0.95969 0.96857 1.69601 1.34475 1.09540 1.40731 0.85919 0.81957 0.77545 0.78801 1.19944 1.20994 1.19895 1.23447 0.92071 0.93398 1.01882 0.91205 0.91574 0.91731 0.83575 0.78174 0.87046 0.85852 0.75842 0.90554 0.90970 0.88086 0.94231 0.93121 0.89247 0.77519 0.91833 0.92516 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.18 36.01 0.37 -0.37 16 2 C -0.16 -1.74 6.16 -104.74 -0.65 -2.39 16 3 C -0.21 -2.01 10.87 -39.70 -0.43 -2.44 16 4 C -0.04 -0.34 12.09 29.41 0.36 0.01 16 5 O -0.17 -1.96 10.65 5.72 0.06 -1.90 16 6 C 0.00 0.03 5.81 -35.62 -0.21 -0.18 16 7 C -0.06 -0.51 6.03 -29.03 -0.18 -0.69 16 8 C 0.51 5.75 7.82 -10.99 -0.09 5.67 16 9 O -0.53 -8.17 15.73 5.55 0.09 -8.08 16 10 N -0.71 -7.12 5.00 -52.46 -0.26 -7.38 16 11 C 0.15 1.65 3.36 -66.54 -0.22 1.43 16 12 H 0.09 1.10 7.64 -51.93 -0.40 0.71 16 13 C -0.13 -1.69 6.78 -25.35 -0.17 -1.86 16 14 C 0.04 0.57 5.80 -2.19 -0.01 0.55 16 15 N -0.48 -7.46 5.06 -231.42 -1.17 -8.63 16 16 C 0.03 0.58 5.30 -4.98 -0.03 0.55 16 17 C 0.44 10.21 7.58 -10.99 -0.08 10.13 16 18 O -0.58 -15.19 14.42 5.55 0.08 -15.11 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.02 0.24 6.10 -2.18 -0.01 0.22 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 7.14 -51.93 -0.37 0.11 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 0.74 7.14 -51.93 -0.37 0.37 16 36 H 0.41 3.30 8.56 -40.82 -0.35 2.95 16 37 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 40 H 0.04 0.59 7.83 -51.92 -0.41 0.19 16 41 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 42 H 0.09 1.36 8.13 -51.92 -0.42 0.94 16 43 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 46 H 0.09 0.88 7.99 -51.93 -0.41 0.47 16 LS Contribution 386.33 15.07 5.82 5.82 Total: -1.00 -34.74 386.33 -8.03 -42.77 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.70 Total: 11.58 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.60 Total: 2.77 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.77 Total: -53.68 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.23 Total: -25.09 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.74 -8.03 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567896895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.983 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds