Wall clock time and date at job start Tue Mar 31 2020 19:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.57995 * 2 1 4 4 C 1.34510 * 106.84397 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41721 * 0.02562 * 4 3 2 6 6 C 1.34299 * 109.47607 * 359.76375 * 5 4 3 7 7 C 1.50707 * 125.78851 * 180.23596 * 6 5 4 8 8 C 1.50697 * 109.47403 * 270.16938 * 7 6 5 9 9 O 1.21285 * 119.99703 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00044 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99762 * 179.97438 * 10 8 7 12 12 H 1.08995 * 110.28781 * 35.67354 * 11 10 8 13 13 C 1.54261 * 110.32527 * 273.53990 * 11 10 8 14 14 C 1.54374 * 105.06440 * 241.11074 * 13 11 10 15 15 N 1.48559 * 104.59587 * 23.84627 * 14 13 11 16 16 C 1.46896 * 110.99913 * 200.95896 * 15 14 13 17 17 C 1.50692 * 109.47616 * 290.13199 * 16 15 14 18 18 O 1.21292 * 119.99882 * 359.97438 * 17 16 15 19 19 N 1.34785 * 120.00277 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99899 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00102 * 359.97438 * 20 19 17 22 22 C 1.38956 * 119.99373 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00217 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99439 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47153 * 60.00352 * 24 22 20 26 26 H 1.48501 * 109.46986 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47688 * 300.00037 * 24 22 20 28 28 C 1.48558 * 104.22317 * 320.52436 * 15 14 13 29 29 H 1.09002 * 109.47152 * 90.02322 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02422 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02403 * 1 2 3 32 32 H 1.08004 * 126.57923 * 359.92934 * 3 2 1 33 33 H 1.08001 * 125.79264 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.47062 * 30.17084 * 7 6 5 35 35 H 1.09006 * 109.46879 * 150.16582 * 7 6 5 36 36 H 0.96993 * 120.00353 * 359.97438 * 10 8 7 37 37 H 1.09003 * 110.32066 * 0.02562 * 13 11 10 38 38 H 1.08997 * 110.31982 * 122.20441 * 13 11 10 39 39 H 1.08997 * 110.41586 * 142.63102 * 14 13 11 40 40 H 1.09008 * 110.40696 * 264.95439 * 14 13 11 41 41 H 1.09000 * 109.47299 * 50.13726 * 16 15 14 42 42 H 1.09008 * 109.46655 * 170.12785 * 16 15 14 43 43 H 0.96995 * 119.99540 * 359.97438 * 19 17 16 44 44 H 0.97001 * 119.99835 * 180.02562 * 23 22 20 45 45 H 1.08996 * 110.41152 * 280.69920 * 28 15 14 46 46 H 1.09002 * 110.40800 * 158.25843 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6616 0.0004 6 6 2.3087 -1.0801 0.0049 7 6 1.8522 -2.5164 0.0112 8 6 1.7007 -3.0016 -1.4075 9 8 1.9394 -2.2546 -2.3326 10 7 1.2990 -4.2654 -1.6481 11 6 1.1513 -4.7369 -3.0273 12 1 1.9187 -4.2944 -3.6623 13 6 -0.2531 -4.3915 -3.5641 14 6 -0.9022 -5.7526 -3.8947 15 7 -0.1823 -6.7288 -3.0369 16 6 -0.3160 -8.0929 -3.5656 17 6 -1.7364 -8.5636 -3.3880 18 8 -2.5568 -7.8347 -2.8714 19 7 -2.0951 -9.7950 -3.8023 20 6 -3.3876 -10.2230 -3.6411 21 1 -4.1182 -9.5736 -3.1819 22 6 -3.7574 -11.4923 -4.0688 23 7 -2.8683 -12.2826 -4.6271 24 14 -5.5182 -12.0758 -3.8486 25 1 -6.4359 -11.1682 -4.5830 26 1 -5.6534 -13.4545 -4.3835 27 1 -5.8654 -12.0683 -2.4047 28 6 1.2325 -6.2777 -3.0788 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 0.8902 0.5135 31 1 -0.3633 -0.8898 0.5142 32 1 2.0367 2.1691 -0.0011 33 1 4.5060 1.2924 0.0003 34 1 2.5901 -3.1298 0.5282 35 1 0.8937 -2.5907 0.5250 36 1 1.1078 -4.8627 -0.9083 37 1 -0.8323 -3.8707 -2.8016 38 1 -0.1749 -3.7808 -4.4636 39 1 -1.9634 -5.7381 -3.6460 40 1 -0.7627 -5.9943 -4.9484 41 1 -0.0612 -8.0984 -4.6253 42 1 0.3577 -8.7590 -3.0265 43 1 -1.4390 -10.3780 -4.2150 44 1 -3.1266 -13.1685 -4.9259 45 1 1.7079 -6.6026 -4.0042 46 1 1.7786 -6.6587 -2.2157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567896895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:39 Heat of formation + Delta-G solvation = -76.070256 kcal Electronic energy + Delta-G solvation = -28112.614185 eV Core-core repulsion = 24002.861797 eV Total energy + Delta-G solvation = -4109.752388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.51276 -41.14031 -40.24135 -38.95298 -35.98963 -35.27568 -35.19534 -33.35070 -33.15840 -32.02044 -29.99906 -29.34230 -28.11462 -26.89892 -25.91589 -22.71575 -22.49972 -22.19260 -21.38317 -20.95121 -20.49395 -19.85533 -18.40929 -18.04021 -17.70686 -17.29276 -16.92999 -16.60342 -16.51443 -16.29702 -15.95310 -15.58883 -15.55749 -15.15401 -14.74710 -14.55642 -14.34619 -14.04046 -13.99045 -13.62660 -13.54346 -13.47304 -13.31403 -13.17267 -13.00209 -12.89624 -12.76520 -12.59486 -12.41171 -12.33004 -12.13085 -12.10098 -11.87587 -11.45323 -11.01070 -10.50520 -10.34883 -10.07654 -9.98207 -9.37833 -9.26830 -8.44711 -5.92929 0.76695 1.40567 1.42430 1.52970 1.60612 1.64936 2.04633 2.08816 2.29600 2.38580 2.82496 3.22235 3.39418 3.51599 3.64109 3.80885 3.96113 4.00689 4.08264 4.14600 4.27412 4.29128 4.32151 4.44286 4.46095 4.50691 4.56175 4.64752 4.70734 4.76086 4.80527 4.87234 4.88667 4.97631 5.07362 5.15925 5.17105 5.33664 5.42426 5.49997 5.68140 5.83716 5.90156 6.08544 6.23292 6.56962 6.63187 7.15421 7.24659 7.59532 8.15638 8.72407 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029962 B = 0.001839 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.282769 B =15225.465020 C =15661.289966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.183 4.183 3 C -0.229 4.229 4 C -0.040 4.040 5 O -0.191 6.191 6 C -0.020 4.020 7 C -0.057 4.057 8 C 0.516 3.484 9 O -0.577 6.577 10 N -0.705 5.705 11 C 0.151 3.849 12 H 0.093 0.907 13 C -0.123 4.123 14 C 0.039 3.961 15 N -0.500 5.500 16 C 0.046 3.954 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.576 5.576 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.028 3.972 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.236 0.764 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.417 0.583 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.074 0.926 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.723 19.672 8.585 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.185 4.185 3 C -0.248 4.248 4 C -0.107 4.107 5 O -0.088 6.088 6 C -0.070 4.070 7 C -0.096 4.096 8 C 0.303 3.697 9 O -0.457 6.457 10 N -0.357 5.357 11 C 0.045 3.955 12 H 0.111 0.889 13 C -0.163 4.163 14 C -0.089 4.089 15 N -0.225 5.225 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.100 4.100 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.181 0.819 33 H 0.252 0.748 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.255 0.745 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.362 20.246 8.737 26.315 hybrid contribution -0.597 -0.809 -0.958 1.389 sum 13.764 19.436 7.780 25.055 Atomic orbital electron populations 1.20230 0.88367 1.03587 1.01856 1.20581 0.98061 0.92632 1.07203 1.22034 0.92933 1.00502 1.09334 1.24681 1.00986 0.80050 1.04959 1.83963 1.29088 1.23957 1.71760 1.21675 0.81186 0.96133 1.07972 1.20186 1.06245 0.88866 0.94332 1.20826 0.75690 0.81641 0.91561 1.90719 1.51672 1.55942 1.47322 1.45959 1.67910 1.12926 1.08935 1.21548 0.96742 0.93673 0.83547 0.88897 1.22672 0.95938 0.96048 1.01616 1.23039 0.99366 0.91767 0.94721 1.65115 1.08557 1.00194 1.48616 1.21936 0.93860 0.92401 1.00331 1.20770 0.91203 0.82331 0.82775 1.90483 1.54543 1.56171 1.48953 1.41925 1.10917 1.14051 1.54432 1.19600 0.87824 0.99627 1.39063 0.90378 1.26004 1.03620 0.95564 0.96112 1.69662 1.35918 1.09812 1.40760 0.85015 0.77338 0.77451 0.78697 1.19870 1.19583 1.19707 1.23508 0.89680 0.93009 1.03765 0.92495 0.90337 0.90579 0.81904 0.74821 0.84451 0.83534 0.74511 0.91450 0.90414 0.92031 0.93953 0.91157 0.86653 0.77042 0.91379 0.90821 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.18 71.24 0.73 -0.68 16 2 C -0.18 -3.78 6.16 -19.94 -0.12 -3.90 16 3 C -0.23 -4.17 10.87 22.19 0.24 -3.93 16 4 C -0.04 -0.67 12.09 66.97 0.81 0.14 16 5 O -0.19 -4.19 10.65 -2.46 -0.03 -4.22 16 6 C -0.02 -0.41 5.81 24.83 0.14 -0.27 16 7 C -0.06 -0.85 6.03 29.10 0.18 -0.67 16 8 C 0.52 10.86 7.82 87.66 0.69 11.54 16 9 O -0.58 -17.49 15.73 -3.04 -0.05 -17.54 16 10 N -0.70 -12.67 5.00 -438.29 -2.19 -14.86 16 11 C 0.15 3.16 3.36 45.89 0.15 3.31 16 12 H 0.09 2.04 7.64 -2.39 -0.02 2.02 16 13 C -0.12 -3.09 6.78 31.49 0.21 -2.88 16 14 C 0.04 1.20 5.80 86.45 0.50 1.70 16 15 N -0.50 -14.66 5.06 -886.07 -4.48 -19.14 16 16 C 0.05 1.49 5.30 85.56 0.45 1.94 16 17 C 0.44 20.41 7.58 87.65 0.66 21.07 16 18 O -0.62 -33.21 14.42 -3.07 -0.04 -33.26 16 19 N -0.58 -28.96 5.29 -306.98 -1.62 -30.58 16 20 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.20 13.05 21.66 0.28 -48.91 16 24 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 28 C 0.03 0.56 6.10 86.45 0.53 1.09 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.04 7.14 -2.38 -0.02 1.03 16 32 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.24 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.15 1.43 7.14 -2.38 -0.02 1.41 16 36 H 0.42 5.72 8.56 -92.71 -0.79 4.92 16 37 H 0.07 1.80 7.95 -2.39 -0.02 1.78 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 2.38 6.91 -2.39 -0.02 2.36 16 40 H 0.04 1.25 7.83 -2.38 -0.02 1.23 16 41 H 0.07 2.03 7.88 -2.39 -0.02 2.01 16 42 H 0.12 3.17 8.13 -2.38 -0.02 3.15 16 43 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 44 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.07 1.29 8.00 -2.39 -0.02 1.27 16 46 H 0.11 1.76 7.99 -2.39 -0.02 1.74 16 Total: -1.00 -77.26 386.33 -0.16 -77.42 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.50 Total: 36.00 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 6.45 Total: 10.43 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -8.02 Total: -113.50 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -0.12 Total: -55.02 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -77.26 -0.16 -77.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567896895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.347 kcal (2) G-P(sol) polarization free energy of solvation -77.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds