Wall clock time and date at job start Tue Mar 31 2020 19:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35128 * 126.44399 * 2 1 4 4 O 1.33925 * 108.76959 * 179.97438 * 3 2 1 5 5 C 1.34922 * 109.38520 * 0.02562 * 4 3 2 6 6 C 1.46652 * 125.98936 * 179.97438 * 5 4 3 7 7 O 1.21697 * 119.99742 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99817 * 0.02562 * 6 5 4 9 9 C 1.47419 * 125.65184 * 5.05366 * 8 6 5 10 10 C 1.54915 * 104.83320 * 155.91351 * 9 8 6 11 11 C 1.55149 * 101.58201 * 37.00840 * 10 9 8 12 12 C 1.47025 * 125.64522 * 185.10247 * 8 6 5 13 13 H 1.09004 * 110.01063 * 300.50304 * 12 8 6 14 14 C 1.53000 * 109.88429 * 61.59768 * 12 8 6 15 15 N 1.46901 * 109.47154 * 181.79387 * 14 12 8 16 16 C 1.46894 * 111.00145 * 185.25746 * 15 14 12 17 17 C 1.50698 * 109.47565 * 180.02562 * 16 15 14 18 18 O 1.21297 * 119.99596 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00418 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99934 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99963 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99912 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 90.00563 * 24 22 20 26 26 H 1.48504 * 109.46670 * 210.00320 * 24 22 20 27 27 H 1.48494 * 109.47297 * 329.99831 * 24 22 20 28 28 C 1.36541 * 108.01964 * 0.22464 * 5 4 3 29 29 H 1.08997 * 109.47364 * 90.01822 * 1 2 3 30 30 H 1.08999 * 109.47543 * 210.02127 * 1 2 3 31 31 H 1.09005 * 109.47094 * 330.02178 * 1 2 3 32 32 H 1.08002 * 125.61494 * 359.97438 * 3 2 1 33 33 H 1.09004 * 110.36856 * 37.07303 * 9 8 6 34 34 H 1.09005 * 110.46056 * 274.79935 * 9 8 6 35 35 H 1.08998 * 111.00055 * 278.93378 * 10 9 8 36 36 H 1.09004 * 111.03257 * 155.10081 * 10 9 8 37 37 H 1.08997 * 110.72547 * 206.13151 * 11 10 9 38 38 H 1.09008 * 110.72123 * 82.85739 * 11 10 9 39 39 H 1.08996 * 109.47300 * 301.79524 * 14 12 8 40 40 H 1.09004 * 109.47015 * 61.79792 * 14 12 8 41 41 H 1.00901 * 110.99732 * 61.30428 * 15 14 12 42 42 H 1.08998 * 109.47259 * 300.00612 * 16 15 14 43 43 H 1.09004 * 109.46948 * 60.00062 * 16 15 14 44 44 H 0.97000 * 119.99431 * 359.97438 * 19 17 16 45 45 H 0.96994 * 120.00273 * 180.02562 * 23 22 20 46 46 H 1.08001 * 126.64642 * 179.76931 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 0.0006 5 6 3.6260 -0.6682 0.0004 6 6 4.8378 -1.4942 0.0003 7 8 4.7470 -2.7077 -0.0003 8 7 6.0520 -0.9092 0.0010 9 6 6.3082 0.5387 0.1073 10 6 7.7456 0.6465 0.6748 11 6 8.4505 -0.5395 -0.0350 12 6 7.3405 -1.6094 -0.1053 13 1 7.4515 -2.3134 0.7195 14 6 7.4194 -2.3544 -1.4393 15 7 8.6914 -3.0852 -1.5175 16 6 8.8583 -3.7119 -2.8355 17 6 10.1708 -4.4511 -2.8778 18 8 10.8957 -4.4558 -1.9053 19 7 10.5392 -5.1070 -3.9961 20 6 11.7335 -5.7791 -4.0346 21 1 12.3789 -5.7832 -3.1687 22 6 12.1130 -6.4557 -5.1873 23 7 11.3274 -6.4511 -6.2407 24 14 13.7400 -7.3720 -5.2396 25 1 13.5354 -8.7706 -4.7845 26 1 14.2618 -7.3752 -6.6300 27 1 14.7164 -6.6985 -4.3462 28 6 2.3408 -1.1291 -0.0054 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5135 32 1 1.9770 2.1145 -0.0004 33 1 5.5952 1.0010 0.7900 34 1 6.2517 1.0087 -0.8745 35 1 7.7496 0.5126 1.7565 36 1 8.2049 1.5957 0.3990 37 1 9.2936 -0.8968 0.5562 38 1 8.7737 -0.2530 -1.0358 39 1 6.5907 -3.0587 -1.5117 40 1 7.3607 -1.6386 -2.2592 41 1 8.7607 -3.7702 -0.7800 42 1 8.0415 -4.4121 -3.0109 43 1 8.8492 -2.9424 -3.6075 44 1 9.9592 -5.1036 -4.7736 45 1 11.5921 -6.9237 -7.0453 46 1 2.0266 -2.1624 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569551258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:50 Heat of formation + Delta-G solvation = -51.664417 kcal Electronic energy + Delta-G solvation = -28175.980222 eV Core-core repulsion = 24067.286150 eV Total energy + Delta-G solvation = -4108.694071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.06774 -40.26501 -38.26064 -37.71056 -35.25291 -34.60515 -33.79120 -32.05408 -31.21620 -30.82748 -30.10971 -27.68209 -26.77587 -25.09981 -24.30820 -22.92605 -22.19328 -21.38634 -20.87808 -19.53558 -19.02002 -17.87935 -17.64976 -17.08175 -16.80163 -16.40339 -15.99016 -15.43090 -15.27917 -14.55867 -14.42945 -14.30241 -14.07275 -13.82591 -13.69306 -13.57240 -13.48680 -13.39633 -13.27386 -13.01514 -12.91612 -12.42354 -12.21359 -12.09071 -11.69482 -11.56017 -11.46945 -11.34308 -11.05825 -10.87508 -10.83298 -10.45660 -10.36917 -10.18764 -10.08120 -9.47663 -9.10758 -8.82672 -8.40354 -8.01459 -7.92238 -6.38403 -3.79163 0.74029 1.93146 2.27736 2.75835 2.91124 3.20334 3.28611 3.34771 3.94975 4.05115 4.16875 4.32105 4.37716 4.48674 4.51235 4.60067 4.76147 4.90580 4.97850 5.15126 5.18747 5.19860 5.24360 5.26805 5.29958 5.39996 5.44773 5.53945 5.57092 5.60762 5.65454 5.78758 5.82906 5.87339 5.94782 6.02018 6.03628 6.17937 6.21572 6.31320 6.52142 7.14463 7.24054 7.58320 7.67695 7.79098 8.09742 8.64867 9.21123 9.58025 10.09523 10.79433 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.001970 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.287799 B =14210.904331 C =15058.939457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.193 4.193 3 C -0.015 4.015 4 O -0.159 6.159 5 C -0.069 4.069 6 C 0.614 3.386 7 O -0.515 6.515 8 N -0.605 5.605 9 C 0.100 3.900 10 C -0.137 4.137 11 C -0.111 4.111 12 C 0.142 3.858 13 H 0.081 0.919 14 C 0.049 3.951 15 N -0.663 5.663 16 C 0.052 3.948 17 C 0.443 3.557 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.208 0.792 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.509 19.219 11.819 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.194 4.194 3 C -0.084 4.084 4 O -0.054 6.054 5 C -0.121 4.121 6 C 0.402 3.598 7 O -0.393 6.393 8 N -0.339 5.339 9 C -0.022 4.022 10 C -0.175 4.175 11 C -0.149 4.149 12 C 0.039 3.961 13 H 0.099 0.901 14 C -0.082 4.082 15 N -0.296 5.296 16 C -0.080 4.080 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.225 0.775 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.169 0.831 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.451 19.163 12.116 29.873 hybrid contribution -0.512 -1.191 -0.690 1.469 sum -19.964 17.972 11.426 29.191 Atomic orbital electron populations 1.20191 0.88594 1.02884 1.02426 1.20497 0.97750 0.92384 1.08782 1.24224 0.80199 1.00038 1.03982 1.84160 1.28987 1.21690 1.70567 1.21989 0.95900 0.80546 1.13625 1.16200 0.80235 0.86037 0.77298 1.90914 1.85403 1.12065 1.50890 1.48416 1.05169 1.08701 1.71576 1.22438 0.97674 0.80581 1.01520 1.22855 0.94094 0.99847 1.00690 1.22585 0.96703 0.93217 1.02432 1.21574 0.81364 0.94976 0.98169 0.90133 1.22250 0.91480 0.97773 0.96665 1.59996 1.32083 1.32889 1.04596 1.21650 0.96662 0.97691 0.92044 1.19790 0.88414 0.84257 0.84743 1.90517 1.55058 1.65377 1.35753 1.41862 1.19880 1.45365 1.13002 1.19705 0.96207 1.26696 1.00207 0.87906 1.25268 0.99599 0.98147 0.95018 1.69614 1.37622 1.43501 1.03627 0.85849 0.81470 0.79542 0.77367 1.20449 1.20952 1.19412 1.21858 0.90498 1.00672 1.00936 0.91187 0.91227 0.91440 0.77503 0.90096 0.90968 0.90642 0.89572 0.89199 0.89689 0.94147 0.91038 0.83068 0.93828 0.89670 0.77459 0.91904 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.39 36.01 0.37 -0.04 16 2 C -0.19 -1.48 6.14 -104.93 -0.64 -2.12 16 3 C -0.01 -0.10 12.00 29.63 0.36 0.26 16 4 O -0.16 -1.43 8.01 4.99 0.04 -1.39 16 5 C -0.07 -0.77 6.92 -36.80 -0.25 -1.02 16 6 C 0.61 8.21 7.56 -12.86 -0.10 8.11 16 7 O -0.52 -8.52 16.06 5.19 0.08 -8.43 16 8 N -0.61 -7.02 3.07 -164.54 -0.50 -7.53 16 9 C 0.10 0.86 6.00 -2.53 -0.02 0.84 16 10 C -0.14 -1.05 7.08 -24.58 -0.17 -1.22 16 11 C -0.11 -1.15 6.21 -24.90 -0.15 -1.30 16 12 C 0.14 1.75 3.09 -66.95 -0.21 1.54 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.05 0.70 5.04 -3.82 -0.02 0.68 16 15 N -0.66 -11.19 5.82 -115.06 -0.67 -11.86 16 16 C 0.05 0.97 6.16 -4.98 -0.03 0.94 16 17 C 0.44 10.73 7.82 -10.99 -0.09 10.64 16 18 O -0.58 -16.06 15.78 5.54 0.09 -15.97 16 19 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 20 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 24 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C -0.12 -1.21 10.57 -39.39 -0.42 -1.62 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.08 0.63 6.55 -51.93 -0.34 0.29 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.94 7.82 -51.92 -0.41 0.53 16 39 H 0.04 0.64 6.96 -51.93 -0.36 0.28 16 40 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 41 H 0.35 6.20 8.49 -39.29 -0.33 5.87 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -34.05 386.89 -7.87 -41.92 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.77 Total: 12.54 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.61 Total: 7.53 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.51 Total: -58.39 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: 0.21 Total: -25.79 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.05 -7.87 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569551258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.745 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds