Wall clock time and date at job start Tue Mar 31 2020 19:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35128 * 126.44399 * 2 1 4 4 O 1.33925 * 108.76959 * 179.97438 * 3 2 1 5 5 C 1.34922 * 109.38520 * 0.02562 * 4 3 2 6 6 C 1.46652 * 125.98936 * 179.97438 * 5 4 3 7 7 O 1.21697 * 119.99742 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99817 * 0.02562 * 6 5 4 9 9 C 1.47419 * 125.65184 * 5.05366 * 8 6 5 10 10 C 1.54915 * 104.83320 * 155.91351 * 9 8 6 11 11 C 1.55149 * 101.58201 * 37.00840 * 10 9 8 12 12 C 1.47025 * 125.64522 * 185.10247 * 8 6 5 13 13 H 1.09004 * 110.01063 * 300.50304 * 12 8 6 14 14 C 1.53000 * 109.88429 * 61.59768 * 12 8 6 15 15 N 1.46901 * 109.47154 * 181.79387 * 14 12 8 16 16 C 1.46894 * 111.00145 * 185.25746 * 15 14 12 17 17 C 1.50698 * 109.47565 * 180.02562 * 16 15 14 18 18 O 1.21297 * 119.99596 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00418 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99934 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99963 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99912 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47363 * 90.00563 * 24 22 20 26 26 H 1.48504 * 109.46670 * 210.00320 * 24 22 20 27 27 H 1.48494 * 109.47297 * 329.99831 * 24 22 20 28 28 C 1.36541 * 108.01964 * 0.22464 * 5 4 3 29 29 H 1.08997 * 109.47364 * 90.01822 * 1 2 3 30 30 H 1.08999 * 109.47543 * 210.02127 * 1 2 3 31 31 H 1.09005 * 109.47094 * 330.02178 * 1 2 3 32 32 H 1.08002 * 125.61494 * 359.97438 * 3 2 1 33 33 H 1.09004 * 110.36856 * 37.07303 * 9 8 6 34 34 H 1.09005 * 110.46056 * 274.79935 * 9 8 6 35 35 H 1.08998 * 111.00055 * 278.93378 * 10 9 8 36 36 H 1.09004 * 111.03257 * 155.10081 * 10 9 8 37 37 H 1.08997 * 110.72547 * 206.13151 * 11 10 9 38 38 H 1.09008 * 110.72123 * 82.85739 * 11 10 9 39 39 H 1.08996 * 109.47300 * 301.79524 * 14 12 8 40 40 H 1.09004 * 109.47015 * 61.79792 * 14 12 8 41 41 H 1.00901 * 110.99732 * 61.30428 * 15 14 12 42 42 H 1.08998 * 109.47259 * 300.00612 * 16 15 14 43 43 H 1.09004 * 109.46948 * 60.00062 * 16 15 14 44 44 H 0.97000 * 119.99431 * 359.97438 * 19 17 16 45 45 H 0.96994 * 120.00273 * 180.02562 * 23 22 20 46 46 H 1.08001 * 126.64642 * 179.76931 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 0.0006 5 6 3.6260 -0.6682 0.0004 6 6 4.8378 -1.4942 0.0003 7 8 4.7470 -2.7077 -0.0003 8 7 6.0520 -0.9092 0.0010 9 6 6.3082 0.5387 0.1073 10 6 7.7456 0.6465 0.6748 11 6 8.4505 -0.5395 -0.0350 12 6 7.3405 -1.6094 -0.1053 13 1 7.4515 -2.3134 0.7195 14 6 7.4194 -2.3544 -1.4393 15 7 8.6914 -3.0852 -1.5175 16 6 8.8583 -3.7119 -2.8355 17 6 10.1708 -4.4511 -2.8778 18 8 10.8957 -4.4558 -1.9053 19 7 10.5392 -5.1070 -3.9961 20 6 11.7335 -5.7791 -4.0346 21 1 12.3789 -5.7832 -3.1687 22 6 12.1130 -6.4557 -5.1873 23 7 11.3274 -6.4511 -6.2407 24 14 13.7400 -7.3720 -5.2396 25 1 13.5354 -8.7706 -4.7845 26 1 14.2618 -7.3752 -6.6300 27 1 14.7164 -6.6985 -4.3462 28 6 2.3408 -1.1291 -0.0054 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3634 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5135 32 1 1.9770 2.1145 -0.0004 33 1 5.5952 1.0010 0.7900 34 1 6.2517 1.0087 -0.8745 35 1 7.7496 0.5126 1.7565 36 1 8.2049 1.5957 0.3990 37 1 9.2936 -0.8968 0.5562 38 1 8.7737 -0.2530 -1.0358 39 1 6.5907 -3.0587 -1.5117 40 1 7.3607 -1.6386 -2.2592 41 1 8.7607 -3.7702 -0.7800 42 1 8.0415 -4.4121 -3.0109 43 1 8.8492 -2.9424 -3.6075 44 1 9.9592 -5.1036 -4.7736 45 1 11.5921 -6.9237 -7.0453 46 1 2.0266 -2.1624 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569551258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:49 Heat of formation + Delta-G solvation = -76.297266 kcal Electronic energy + Delta-G solvation = -28177.048382 eV Core-core repulsion = 24067.286150 eV Total energy + Delta-G solvation = -4109.762232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.73258 -41.21522 -40.15519 -38.75750 -36.67760 -35.81226 -35.19631 -33.30335 -32.94223 -31.66396 -31.09266 -28.40754 -28.05977 -26.45853 -25.59481 -24.20070 -22.95771 -22.06093 -21.76061 -21.17328 -20.18339 -19.85879 -18.45813 -18.03315 -17.84954 -17.45223 -17.03585 -16.94933 -16.55110 -16.22701 -15.94602 -15.44489 -15.23501 -15.12354 -14.91768 -14.61958 -14.20486 -14.14339 -14.02057 -13.95416 -13.76283 -13.54544 -13.52012 -13.33390 -13.23379 -12.86752 -12.71543 -12.55965 -12.42915 -12.12189 -12.06188 -11.90786 -11.63806 -11.52136 -11.47910 -10.76501 -10.40540 -10.03661 -9.95434 -9.52934 -9.44372 -8.47768 -5.96994 -0.03108 1.31351 1.37605 1.41197 1.47387 1.54697 1.97143 2.01487 2.02183 2.28725 2.89401 3.18848 3.35738 3.49146 3.63284 3.75574 3.79761 3.85679 4.04244 4.17183 4.22131 4.28956 4.31324 4.35481 4.46011 4.49498 4.60059 4.62719 4.68080 4.78586 4.87261 4.89284 4.98812 5.00854 5.02916 5.08429 5.13089 5.29042 5.38290 5.39780 5.50322 5.76280 5.85784 6.02530 6.23878 6.28495 6.57613 6.82310 7.10395 7.53238 8.08012 8.69754 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.001970 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.287799 B =14210.904331 C =15058.939457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C 0.008 3.992 4 O -0.159 6.159 5 C -0.098 4.098 6 C 0.607 3.393 7 O -0.563 6.563 8 N -0.604 5.604 9 C 0.098 3.902 10 C -0.124 4.124 11 C -0.108 4.108 12 C 0.142 3.858 13 H 0.065 0.935 14 C 0.059 3.941 15 N -0.664 5.664 16 C 0.065 3.935 17 C 0.440 3.560 18 O -0.619 6.619 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.996 3.004 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.127 4.127 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.255 0.745 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.021 0.979 40 H 0.081 0.919 41 H 0.343 0.657 42 H 0.057 0.943 43 H 0.107 0.893 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.451 21.781 11.678 32.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.061 4.061 4 O -0.054 6.054 5 C -0.149 4.149 6 C 0.397 3.603 7 O -0.445 6.445 8 N -0.336 5.336 9 C -0.023 4.023 10 C -0.162 4.162 11 C -0.146 4.146 12 C 0.038 3.962 13 H 0.083 0.917 14 C -0.071 4.071 15 N -0.296 5.296 16 C -0.067 4.067 17 C 0.228 3.772 18 O -0.506 6.506 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.819 3.181 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.148 4.148 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.271 0.729 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.099 0.901 41 H 0.162 0.838 42 H 0.075 0.925 43 H 0.125 0.875 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.410 21.769 11.963 32.149 hybrid contribution -0.330 -1.916 -0.627 2.043 sum -20.740 19.853 11.335 30.867 Atomic orbital electron populations 1.20257 0.86689 1.03876 1.03078 1.20827 0.99123 0.91664 1.09256 1.25173 0.78888 1.01645 1.00390 1.84144 1.30356 1.20320 1.70576 1.21555 0.95094 0.81543 1.16749 1.16544 0.81239 0.85845 0.76625 1.90871 1.86252 1.14074 1.53287 1.48505 1.04353 1.10043 1.70651 1.22658 0.98497 0.78603 1.02528 1.22852 0.92979 0.99655 1.00671 1.22527 0.95856 0.93682 1.02557 1.21507 0.82830 0.95517 0.96331 0.91716 1.22203 0.89336 0.97259 0.98296 1.60020 1.33644 1.32465 1.03510 1.21521 0.93548 0.98020 0.93623 1.20703 0.89698 0.83311 0.83524 1.90486 1.56755 1.66454 1.36861 1.41927 1.19566 1.45771 1.13716 1.19696 0.97421 1.28939 1.00336 0.90130 1.26094 1.02885 0.98240 0.94212 1.69679 1.38935 1.43589 1.03985 0.84886 0.77124 0.78214 0.77851 1.19692 1.19453 1.19620 1.22067 0.91030 1.01339 1.00324 0.90648 0.91578 0.89179 0.72890 0.88902 0.89934 0.90086 0.87017 0.89754 0.90076 0.96053 0.90109 0.83834 0.92519 0.87530 0.77034 0.91268 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.39 71.24 0.74 0.11 16 2 C -0.21 -2.78 6.14 -20.06 -0.12 -2.90 16 3 C 0.01 0.08 12.00 67.10 0.81 0.89 16 4 O -0.16 -2.53 8.01 -5.06 -0.04 -2.57 16 5 C -0.10 -2.18 6.92 24.07 0.17 -2.01 16 6 C 0.61 16.82 7.56 86.44 0.65 17.47 16 7 O -0.56 -19.93 16.06 -4.34 -0.07 -20.00 16 8 N -0.60 -13.97 3.07 -792.71 -2.43 -16.40 16 9 C 0.10 1.49 6.00 86.86 0.52 2.01 16 10 C -0.12 -1.61 7.08 31.99 0.23 -1.39 16 11 C -0.11 -2.14 6.21 31.78 0.20 -1.94 16 12 C 0.14 3.55 3.09 45.34 0.14 3.69 16 13 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 14 C 0.06 1.72 5.04 86.30 0.43 2.15 16 15 N -0.66 -22.78 5.82 -517.94 -3.01 -25.80 16 16 C 0.07 2.44 6.16 85.56 0.53 2.97 16 17 C 0.44 21.79 7.82 87.66 0.69 22.48 16 18 O -0.62 -35.11 15.78 -3.08 -0.05 -35.16 16 19 N -0.57 -30.41 5.29 -306.99 -1.62 -32.03 16 20 C -0.33 -19.43 9.68 84.04 0.81 -18.62 16 21 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 24 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C -0.13 -2.59 10.57 22.39 0.24 -2.35 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.28 8.14 -2.38 -0.02 0.27 16 32 H 0.26 -0.12 8.06 -2.91 -0.02 -0.14 16 33 H 0.09 1.22 6.55 -2.39 -0.02 1.20 16 34 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.69 7.82 -2.38 -0.02 1.67 16 39 H 0.02 0.71 6.96 -2.39 -0.02 0.69 16 40 H 0.08 2.18 8.08 -2.38 -0.02 2.16 16 41 H 0.34 12.63 8.49 -89.69 -0.76 11.87 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 44 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 45 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -76.37 386.89 1.10 -75.27 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.48 Total: 39.24 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 6.49 Total: 22.22 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -6.78 Total: -124.70 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -0.16 Total: -57.73 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.37 1.10 -75.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569551258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.030 kcal (2) G-P(sol) polarization free energy of solvation -76.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds