Wall clock time and date at job start Tue Mar 31 2020 19:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35129 * 126.43891 * 2 1 4 4 O 1.33935 * 108.76732 * 179.76023 * 3 2 1 5 5 C 1.34912 * 109.37996 * 0.40615 * 4 3 2 6 6 C 1.46666 * 125.98594 * 179.86431 * 5 4 3 7 7 O 1.21691 * 120.00249 * 179.68880 * 6 5 4 8 8 N 1.34774 * 119.99935 * 359.68964 * 6 5 4 9 9 C 1.47470 * 125.62919 * 4.75280 * 8 6 5 10 10 C 1.54908 * 104.80993 * 204.05039 * 9 8 6 11 11 C 1.55154 * 101.62085 * 323.04085 * 10 9 8 12 12 C 1.47023 * 125.64952 * 184.73076 * 8 6 5 13 13 H 1.08997 * 109.88124 * 59.57493 * 12 8 6 14 14 C 1.53003 * 109.88162 * 298.41122 * 12 8 6 15 15 N 1.46897 * 109.47271 * 176.83423 * 14 12 8 16 16 C 1.46899 * 110.99996 * 184.90661 * 15 14 12 17 17 C 1.50707 * 109.46808 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00143 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99454 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99578 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00419 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99955 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99764 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99985 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46954 * 90.00450 * 24 22 20 26 26 H 1.48504 * 109.46940 * 209.99985 * 24 22 20 27 27 H 1.48494 * 109.47106 * 330.00346 * 24 22 20 28 28 C 1.36538 * 108.02722 * 359.59882 * 5 4 3 29 29 H 1.09002 * 109.46535 * 269.99083 * 1 2 3 30 30 H 1.08999 * 109.47220 * 29.99294 * 1 2 3 31 31 H 1.08996 * 109.46871 * 149.99752 * 1 2 3 32 32 H 1.08003 * 125.62052 * 359.97149 * 3 2 1 33 33 H 1.09000 * 110.34682 * 85.23296 * 9 8 6 34 34 H 1.08995 * 110.40507 * 322.89597 * 9 8 6 35 35 H 1.09003 * 111.00403 * 204.94902 * 10 9 8 36 36 H 1.09005 * 111.00721 * 81.13702 * 10 9 8 37 37 H 1.08995 * 110.72277 * 153.84224 * 11 10 9 38 38 H 1.08999 * 110.72042 * 277.12481 * 11 10 9 39 39 H 1.09002 * 109.47078 * 296.83524 * 14 12 8 40 40 H 1.08999 * 109.47087 * 56.83117 * 14 12 8 41 41 H 1.00908 * 110.99973 * 308.86453 * 15 14 12 42 42 H 1.08994 * 109.47103 * 300.00316 * 16 15 14 43 43 H 1.09005 * 109.46839 * 60.00505 * 16 15 14 44 44 H 0.96998 * 120.00402 * 0.02562 * 19 17 16 45 45 H 0.97007 * 119.99702 * 179.97438 * 23 22 20 46 46 H 1.08000 * 126.64890 * 180.22276 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0053 5 6 3.6260 -0.6680 -0.0002 6 6 4.8380 -1.4940 0.0001 7 8 4.7473 -2.7075 0.0005 8 7 6.0521 -0.9090 0.0001 9 6 6.3076 0.5400 0.0990 10 6 7.7003 0.7417 -0.5485 11 6 8.4488 -0.5355 -0.0839 12 6 7.3409 -1.6097 -0.0981 13 1 7.3851 -2.1757 -1.0286 14 6 7.5136 -2.5511 1.0956 15 7 8.7678 -3.3018 0.9498 16 6 8.9112 -4.2999 2.0180 17 6 10.2062 -5.0488 1.8352 18 8 10.9378 -4.7775 0.9067 19 7 10.5516 -6.0194 2.7041 20 6 11.7299 -6.7004 2.5382 21 1 12.3814 -6.4588 1.7114 22 6 12.0859 -7.7014 3.4337 23 7 11.2929 -7.9958 4.4394 24 14 13.6917 -8.6288 3.2079 25 1 14.7751 -7.9289 3.9438 26 1 13.5451 -10.0085 3.7372 27 1 14.0313 -8.6861 1.7635 28 6 2.3409 -1.1291 -0.0002 29 1 -0.3632 -0.0002 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9770 2.1146 -0.0004 33 1 6.3262 0.8511 1.1435 34 1 5.5494 1.0980 -0.4504 35 1 8.1838 1.6396 -0.1636 36 1 7.6246 0.7766 -1.6353 37 1 9.2440 -0.7925 -0.7837 38 1 8.8465 -0.4049 0.9225 39 1 7.5438 -1.9685 2.0164 40 1 6.6757 -3.2473 1.1335 41 1 8.8265 -3.7347 0.0401 42 1 8.9145 -3.7984 2.9858 43 1 8.0774 -5.0007 1.9747 44 1 9.9667 -6.2362 3.4469 45 1 11.5412 -8.6949 5.0643 46 1 2.0267 -2.1624 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569551259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:54 Heat of formation + Delta-G solvation = -50.831473 kcal Electronic energy + Delta-G solvation = -28166.313481 eV Core-core repulsion = 24057.655529 eV Total energy + Delta-G solvation = -4108.657952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.07910 -40.28304 -38.24750 -37.71873 -35.24904 -34.61325 -33.78118 -32.06259 -31.20538 -30.83405 -30.10789 -27.69037 -26.75693 -25.11506 -24.29278 -22.89201 -22.21217 -21.39781 -20.92349 -19.56547 -19.03353 -17.87142 -17.64629 -17.08075 -16.79830 -16.44031 -15.96694 -15.40719 -15.13730 -14.57463 -14.53252 -14.31744 -14.08385 -13.82376 -13.70183 -13.58430 -13.48857 -13.36854 -13.26935 -13.02515 -12.88335 -12.44568 -12.23304 -12.09762 -11.67954 -11.58113 -11.45561 -11.34326 -11.04959 -10.86776 -10.85447 -10.43386 -10.36275 -10.17853 -10.08857 -9.46710 -9.11237 -8.82637 -8.38894 -7.99586 -7.91040 -6.37430 -3.78161 0.73379 1.92674 2.26102 2.74891 2.90894 3.20970 3.29131 3.35295 3.96281 4.04587 4.17231 4.30828 4.37060 4.49393 4.50457 4.58890 4.74128 4.89415 4.96517 5.14788 5.18551 5.20039 5.22598 5.25834 5.29986 5.38809 5.44815 5.53434 5.56226 5.63145 5.63897 5.79920 5.84603 5.88620 5.96810 6.01743 6.05984 6.16962 6.20411 6.32967 6.51046 7.14087 7.25322 7.59162 7.69049 7.78873 8.10757 8.65976 9.22074 9.59212 10.10720 10.80394 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.001962 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.015104 B =14267.521547 C =15228.756690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.192 4.192 3 C -0.016 4.016 4 O -0.159 6.159 5 C -0.068 4.068 6 C 0.614 3.386 7 O -0.514 6.514 8 N -0.605 5.605 9 C 0.097 3.903 10 C -0.136 4.136 11 C -0.114 4.114 12 C 0.140 3.860 13 H 0.080 0.920 14 C 0.047 3.953 15 N -0.663 5.663 16 C 0.052 3.948 17 C 0.443 3.557 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.208 0.792 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.349 0.651 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.569 22.020 -7.652 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.194 4.194 3 C -0.085 4.085 4 O -0.054 6.054 5 C -0.120 4.120 6 C 0.402 3.598 7 O -0.391 6.391 8 N -0.339 5.339 9 C -0.025 4.025 10 C -0.174 4.174 11 C -0.152 4.152 12 C 0.038 3.962 13 H 0.098 0.902 14 C -0.083 4.083 15 N -0.296 5.296 16 C -0.081 4.081 17 C 0.228 3.772 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.139 4.139 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.168 0.832 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.507 22.003 -7.801 30.422 hybrid contribution -0.517 -1.300 0.300 1.431 sum -20.024 20.702 -7.501 29.762 Atomic orbital electron populations 1.20193 0.88594 1.02898 1.02421 1.20497 0.97749 0.92383 1.08743 1.24238 0.80263 1.00039 1.03993 1.84172 1.28910 1.21704 1.70659 1.21992 0.95889 0.80530 1.13614 1.16217 0.80223 0.86053 0.77324 1.90914 1.85355 1.12048 1.50819 1.48420 1.05071 1.08600 1.71770 1.22517 0.98098 0.80476 1.01401 1.22845 0.94429 0.99142 1.01031 1.22620 0.96478 0.92276 1.03785 1.21633 0.81458 0.94193 0.98956 0.90242 1.22313 0.91766 0.96637 0.97618 1.60083 1.33589 1.29283 1.06609 1.21659 0.96733 0.93636 0.96056 1.19796 0.88398 0.83520 0.85455 1.90511 1.54094 1.68532 1.33614 1.41862 1.20792 1.31589 1.25876 1.19706 0.97317 1.13918 1.11873 0.87915 1.25271 0.99485 0.97745 0.95544 1.69623 1.37495 1.32263 1.14976 0.85849 0.81289 0.78338 0.78745 1.20420 1.20970 1.19444 1.21859 0.90490 1.00684 1.00898 0.91185 0.91438 0.91219 0.77517 0.90979 0.89666 0.89571 0.90631 0.89221 0.89580 0.91072 0.93614 0.83231 0.89681 0.93762 0.77447 0.91912 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.39 36.01 0.37 -0.04 16 2 C -0.19 -1.46 6.14 -104.93 -0.64 -2.10 16 3 C -0.02 -0.10 12.00 29.63 0.36 0.25 16 4 O -0.16 -1.41 7.77 4.99 0.04 -1.37 16 5 C -0.07 -0.76 6.94 -36.80 -0.26 -1.02 16 6 C 0.61 8.17 7.64 -12.86 -0.10 8.07 16 7 O -0.51 -8.49 15.68 5.20 0.08 -8.41 16 8 N -0.61 -6.98 3.07 -164.51 -0.50 -7.48 16 9 C 0.10 0.82 6.33 -2.50 -0.02 0.81 16 10 C -0.14 -1.02 7.08 -24.58 -0.17 -1.19 16 11 C -0.11 -1.15 6.25 -24.90 -0.16 -1.30 16 12 C 0.14 1.72 3.04 -66.95 -0.20 1.51 16 13 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.05 0.68 5.08 -3.82 -0.02 0.66 16 15 N -0.66 -11.30 5.91 -115.06 -0.68 -11.98 16 16 C 0.05 0.98 6.16 -4.97 -0.03 0.95 16 17 C 0.44 10.82 7.82 -10.98 -0.09 10.74 16 18 O -0.58 -16.14 15.78 5.55 0.09 -16.06 16 19 N -0.56 -14.78 5.29 -10.96 -0.06 -14.84 16 20 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 24 Si 0.93 21.45 29.55 -169.99 -5.02 16.43 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 C -0.12 -1.20 10.57 -39.40 -0.42 -1.61 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.21 0.49 8.06 -52.48 -0.42 0.07 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.65 5.96 -51.93 -0.31 0.35 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.93 7.80 -51.93 -0.40 0.53 16 39 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 40 H 0.05 0.74 6.59 -51.93 -0.34 0.40 16 41 H 0.35 6.17 8.36 -39.29 -0.33 5.84 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -34.21 385.70 -7.84 -42.06 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -6.71 Total: 12.69 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.61 Total: 7.53 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.52 Total: -58.68 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: 0.21 Total: -25.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.21 -7.84 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569551259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.774 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds