Wall clock time and date at job start Tue Mar 31 2020 19:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35129 * 126.43891 * 2 1 4 4 O 1.33935 * 108.76732 * 179.76023 * 3 2 1 5 5 C 1.34912 * 109.37996 * 0.40615 * 4 3 2 6 6 C 1.46666 * 125.98594 * 179.86431 * 5 4 3 7 7 O 1.21691 * 120.00249 * 179.68880 * 6 5 4 8 8 N 1.34774 * 119.99935 * 359.68964 * 6 5 4 9 9 C 1.47470 * 125.62919 * 4.75280 * 8 6 5 10 10 C 1.54908 * 104.80993 * 204.05039 * 9 8 6 11 11 C 1.55154 * 101.62085 * 323.04085 * 10 9 8 12 12 C 1.47023 * 125.64952 * 184.73076 * 8 6 5 13 13 H 1.08997 * 109.88124 * 59.57493 * 12 8 6 14 14 C 1.53003 * 109.88162 * 298.41122 * 12 8 6 15 15 N 1.46897 * 109.47271 * 176.83423 * 14 12 8 16 16 C 1.46899 * 110.99996 * 184.90661 * 15 14 12 17 17 C 1.50707 * 109.46808 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00143 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99454 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99578 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00419 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99955 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99764 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99985 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46954 * 90.00450 * 24 22 20 26 26 H 1.48504 * 109.46940 * 209.99985 * 24 22 20 27 27 H 1.48494 * 109.47106 * 330.00346 * 24 22 20 28 28 C 1.36538 * 108.02722 * 359.59882 * 5 4 3 29 29 H 1.09002 * 109.46535 * 269.99083 * 1 2 3 30 30 H 1.08999 * 109.47220 * 29.99294 * 1 2 3 31 31 H 1.08996 * 109.46871 * 149.99752 * 1 2 3 32 32 H 1.08003 * 125.62052 * 359.97149 * 3 2 1 33 33 H 1.09000 * 110.34682 * 85.23296 * 9 8 6 34 34 H 1.08995 * 110.40507 * 322.89597 * 9 8 6 35 35 H 1.09003 * 111.00403 * 204.94902 * 10 9 8 36 36 H 1.09005 * 111.00721 * 81.13702 * 10 9 8 37 37 H 1.08995 * 110.72277 * 153.84224 * 11 10 9 38 38 H 1.08999 * 110.72042 * 277.12481 * 11 10 9 39 39 H 1.09002 * 109.47078 * 296.83524 * 14 12 8 40 40 H 1.08999 * 109.47087 * 56.83117 * 14 12 8 41 41 H 1.00908 * 110.99973 * 308.86453 * 15 14 12 42 42 H 1.08994 * 109.47103 * 300.00316 * 16 15 14 43 43 H 1.09005 * 109.46839 * 60.00505 * 16 15 14 44 44 H 0.96998 * 120.00402 * 0.02562 * 19 17 16 45 45 H 0.97007 * 119.99702 * 179.97438 * 23 22 20 46 46 H 1.08000 * 126.64890 * 180.22276 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0053 5 6 3.6260 -0.6680 -0.0002 6 6 4.8380 -1.4940 0.0001 7 8 4.7473 -2.7075 0.0005 8 7 6.0521 -0.9090 0.0001 9 6 6.3076 0.5400 0.0990 10 6 7.7003 0.7417 -0.5485 11 6 8.4488 -0.5355 -0.0839 12 6 7.3409 -1.6097 -0.0981 13 1 7.3851 -2.1757 -1.0286 14 6 7.5136 -2.5511 1.0956 15 7 8.7678 -3.3018 0.9498 16 6 8.9112 -4.2999 2.0180 17 6 10.2062 -5.0488 1.8352 18 8 10.9378 -4.7775 0.9067 19 7 10.5516 -6.0194 2.7041 20 6 11.7299 -6.7004 2.5382 21 1 12.3814 -6.4588 1.7114 22 6 12.0859 -7.7014 3.4337 23 7 11.2929 -7.9958 4.4394 24 14 13.6917 -8.6288 3.2079 25 1 14.7751 -7.9289 3.9438 26 1 13.5451 -10.0085 3.7372 27 1 14.0313 -8.6861 1.7635 28 6 2.3409 -1.1291 -0.0002 29 1 -0.3632 -0.0002 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9770 2.1146 -0.0004 33 1 6.3262 0.8511 1.1435 34 1 5.5494 1.0980 -0.4504 35 1 8.1838 1.6396 -0.1636 36 1 7.6246 0.7766 -1.6353 37 1 9.2440 -0.7925 -0.7837 38 1 8.8465 -0.4049 0.9225 39 1 7.5438 -1.9685 2.0164 40 1 6.6757 -3.2473 1.1335 41 1 8.8265 -3.7347 0.0401 42 1 8.9145 -3.7984 2.9858 43 1 8.0774 -5.0007 1.9747 44 1 9.9667 -6.2362 3.4469 45 1 11.5412 -8.6949 5.0643 46 1 2.0267 -2.1624 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569551259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:53 Heat of formation + Delta-G solvation = -75.641118 kcal Electronic energy + Delta-G solvation = -28167.389308 eV Core-core repulsion = 24057.655529 eV Total energy + Delta-G solvation = -4109.733779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.73854 -41.22793 -40.15710 -38.75898 -36.68130 -35.81549 -35.20128 -33.30621 -32.94358 -31.66491 -31.09156 -28.40920 -28.05259 -26.46188 -25.60153 -24.17746 -22.96799 -22.06825 -21.79420 -21.17873 -20.21977 -19.86824 -18.46884 -18.01220 -17.86123 -17.44706 -17.05929 -16.90278 -16.53892 -16.16140 -15.94280 -15.47812 -15.26962 -15.12912 -14.92869 -14.63625 -14.21509 -14.15952 -14.01929 -13.95901 -13.71888 -13.55738 -13.51477 -13.35047 -13.22226 -12.86752 -12.76902 -12.56035 -12.43149 -12.12593 -12.04677 -11.88821 -11.63918 -11.52211 -11.46557 -10.76693 -10.39958 -10.03899 -9.95470 -9.52378 -9.44590 -8.47891 -5.97239 -0.03185 1.31413 1.37615 1.41011 1.46495 1.54623 1.96156 2.01543 2.02573 2.28609 2.89647 3.18703 3.34908 3.48708 3.63999 3.74901 3.79544 3.83539 4.04185 4.16691 4.21079 4.28060 4.31096 4.36048 4.45806 4.50474 4.60748 4.63375 4.69028 4.78836 4.87244 4.90107 4.98722 5.01498 5.02764 5.08920 5.12977 5.28318 5.37645 5.39510 5.50455 5.76434 5.85287 6.02286 6.25291 6.27829 6.57255 6.82245 7.10018 7.52852 8.07464 8.69644 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.001962 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.015104 B =14267.521547 C =15228.756690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C 0.008 3.992 4 O -0.159 6.159 5 C -0.097 4.097 6 C 0.607 3.393 7 O -0.562 6.562 8 N -0.604 5.604 9 C 0.095 3.905 10 C -0.123 4.123 11 C -0.110 4.110 12 C 0.140 3.860 13 H 0.066 0.934 14 C 0.057 3.943 15 N -0.664 5.664 16 C 0.065 3.935 17 C 0.441 3.559 18 O -0.619 6.619 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.997 3.003 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.272 1.272 28 C -0.127 4.127 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.255 0.745 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.026 0.974 41 H 0.343 0.657 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.432 24.524 -7.444 33.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.061 4.061 4 O -0.054 6.054 5 C -0.149 4.149 6 C 0.397 3.603 7 O -0.444 6.444 8 N -0.336 5.336 9 C -0.026 4.026 10 C -0.161 4.161 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.084 0.916 14 C -0.073 4.073 15 N -0.296 5.296 16 C -0.068 4.068 17 C 0.228 3.772 18 O -0.505 6.505 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.148 4.148 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.271 0.729 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.044 0.956 41 H 0.161 0.839 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.385 24.549 -7.575 32.796 hybrid contribution -0.359 -2.001 0.230 2.046 sum -20.744 22.548 -7.345 31.507 Atomic orbital electron populations 1.20258 0.86702 1.03855 1.03094 1.20825 0.99116 0.91668 1.09248 1.25188 0.78940 1.01645 1.00364 1.84153 1.30279 1.20316 1.70656 1.21554 0.95071 0.81536 1.16726 1.16567 0.81242 0.85865 0.76654 1.90870 1.86211 1.14060 1.53228 1.48514 1.04253 1.09949 1.70835 1.22741 0.99011 0.78494 1.02354 1.22842 0.93251 0.98546 1.01446 1.22566 0.95720 0.92969 1.03587 1.21575 0.82939 0.94651 0.97190 0.91579 1.22262 0.89603 0.96310 0.99106 1.60102 1.35142 1.28597 1.05775 1.21523 0.93749 0.93929 0.97559 1.20686 0.89576 0.82779 0.84167 1.90479 1.55754 1.69396 1.34869 1.41931 1.20510 1.32105 1.26438 1.19705 0.98512 1.15801 1.12396 0.90083 1.26111 1.02713 0.97851 0.94797 1.69690 1.38797 1.32515 1.15219 0.84876 0.77176 0.77429 0.78524 1.19455 1.19558 1.19693 1.22065 0.91041 1.01335 1.00317 0.90600 0.89187 0.91625 0.72874 0.90040 0.88458 0.87023 0.89981 0.89586 0.90030 0.90341 0.95609 0.83858 0.87723 0.92621 0.77061 0.91270 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.39 71.24 0.74 0.12 16 2 C -0.21 -2.75 6.14 -20.06 -0.12 -2.88 16 3 C 0.01 0.08 12.00 67.10 0.81 0.88 16 4 O -0.16 -2.49 7.77 -5.05 -0.04 -2.53 16 5 C -0.10 -2.16 6.94 24.07 0.17 -1.99 16 6 C 0.61 16.76 7.64 86.44 0.66 17.42 16 7 O -0.56 -19.88 15.68 -4.32 -0.07 -19.95 16 8 N -0.60 -13.89 3.07 -792.61 -2.43 -16.32 16 9 C 0.10 1.42 6.33 86.85 0.55 1.97 16 10 C -0.12 -1.55 7.08 31.98 0.23 -1.33 16 11 C -0.11 -2.14 6.25 31.78 0.20 -1.94 16 12 C 0.14 3.47 3.04 45.34 0.14 3.61 16 13 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 14 C 0.06 1.68 5.08 86.30 0.44 2.12 16 15 N -0.66 -23.04 5.91 -517.93 -3.06 -26.10 16 16 C 0.07 2.48 6.16 85.56 0.53 3.01 16 17 C 0.44 22.04 7.82 87.66 0.69 22.72 16 18 O -0.62 -35.24 15.78 -3.05 -0.05 -35.29 16 19 N -0.57 -30.69 5.29 -306.98 -1.62 -32.31 16 20 C -0.33 -19.55 9.68 84.04 0.81 -18.74 16 21 H 0.08 5.01 7.16 -2.91 -0.02 4.98 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.92 -51.10 13.05 21.66 0.28 -50.82 16 24 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 C -0.13 -2.58 10.57 22.39 0.24 -2.34 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.26 -0.18 8.06 -2.91 -0.02 -0.20 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.10 1.26 5.96 -2.39 -0.01 1.24 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.67 7.80 -2.39 -0.02 1.65 16 39 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 40 H 0.03 0.88 6.59 -2.39 -0.02 0.86 16 41 H 0.34 12.60 8.36 -89.69 -0.75 11.85 16 42 H 0.10 3.60 8.14 -2.39 -0.02 3.59 16 43 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.40 20.28 7.90 -92.71 -0.73 19.55 16 45 H 0.28 14.39 8.31 -92.70 -0.77 13.62 16 46 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -76.70 385.70 1.11 -75.60 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.46 Total: 39.58 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 6.53 Total: 22.27 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -6.83 Total: -125.56 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -0.16 Total: -57.76 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -76.70 1.11 -75.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569551259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.044 kcal (2) G-P(sol) polarization free energy of solvation -76.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds