Wall clock time and date at job start Tue Mar 31 2020 18:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35237 * 126.06788 * 2 1 4 4 C 1.40408 * 107.86509 * 180.17876 * 3 2 1 5 5 N 1.40161 * 125.97091 * 179.82702 * 4 3 2 6 6 C 1.34775 * 120.00377 * 359.72765 * 5 4 3 7 7 O 1.21296 * 119.99488 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00466 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.46894 * 299.99734 * 8 6 5 10 10 C 1.50706 * 109.47327 * 59.99534 * 8 6 5 11 11 O 1.20825 * 119.99859 * 359.97438 * 10 8 6 12 12 O 1.34224 * 120.00295 * 180.02562 * 10 8 6 13 13 C 1.52997 * 109.47528 * 179.97438 * 8 6 5 14 14 C 1.54268 * 110.03671 * 177.90746 * 13 8 6 15 15 C 1.54962 * 104.15993 * 217.13910 * 14 13 8 16 16 C 1.54885 * 102.77961 * 37.88261 * 15 14 13 17 17 C 1.53880 * 110.03185 * 60.68785 * 13 8 6 18 18 N 1.31213 * 108.05418 * 359.57305 * 4 3 2 19 19 N 1.34968 * 126.06951 * 179.71035 * 2 1 3 20 20 C 1.46501 * 125.97578 * 359.94200 * 19 2 1 21 21 C 1.50699 * 109.47048 * 270.01496 * 20 19 2 22 22 H 1.07996 * 120.00150 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99870 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99991 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46984 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47404 * 120.00018 * 25 23 21 28 28 H 1.48500 * 109.47365 * 239.99943 * 25 23 21 29 29 H 1.09002 * 109.47374 * 270.28983 * 1 2 3 30 30 H 1.09000 * 109.47344 * 30.28896 * 1 2 3 31 31 H 1.09000 * 109.46992 * 150.29144 * 1 2 3 32 32 H 1.07999 * 126.06737 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99889 * 179.71571 * 5 4 3 34 34 H 0.96700 * 117.00196 * 179.97438 * 12 10 8 35 35 H 1.09008 * 110.01679 * 299.29973 * 13 8 6 36 36 H 1.08998 * 110.48040 * 335.78552 * 14 13 8 37 37 H 1.08995 * 110.48852 * 98.42322 * 14 13 8 38 38 H 1.09001 * 110.71770 * 279.56941 * 15 14 13 39 39 H 1.09003 * 110.92572 * 156.29570 * 15 14 13 40 40 H 1.09001 * 110.48960 * 203.40125 * 16 15 14 41 41 H 1.09010 * 110.59807 * 80.82249 * 16 15 14 42 42 H 1.08998 * 110.03146 * 238.57157 * 17 13 8 43 43 H 1.09002 * 110.03024 * 359.95420 * 17 13 8 44 44 H 1.09002 * 109.46862 * 30.01914 * 20 19 2 45 45 H 1.09002 * 109.46918 * 150.01335 * 20 19 2 46 46 H 0.97003 * 119.99862 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 -0.0042 5 7 4.7734 1.4749 -0.0090 6 6 4.6366 2.8157 -0.0154 7 8 3.5300 3.3124 -0.0176 8 6 5.8584 3.6978 -0.0200 9 1 6.4539 3.4982 0.8709 10 6 6.6814 3.4099 -1.2492 11 8 6.3137 2.5738 -2.0402 12 8 7.8233 4.0815 -1.4649 13 6 5.4277 5.1659 -0.0276 14 6 6.6686 6.0811 0.0206 15 6 6.2314 7.2656 0.9190 16 6 5.3670 6.5734 2.0019 17 6 4.6001 5.4789 1.2314 18 7 3.6336 -0.6576 0.0027 19 7 2.3016 -1.0909 0.0055 20 6 1.8500 -2.4846 0.0138 21 6 1.6960 -2.9543 1.4374 22 1 1.9124 -2.2819 2.2543 23 6 1.2788 -4.2425 1.6969 24 7 1.0157 -5.0615 0.7021 25 14 1.0871 -4.8245 3.4615 26 1 1.4432 -3.7202 4.3884 27 1 -0.3204 -5.2349 3.6974 28 1 1.9868 -5.9813 3.7017 29 1 -0.3634 0.0052 1.0276 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9719 2.1211 0.0004 33 1 5.6583 1.0777 -0.0074 34 1 8.3171 3.8619 -2.2668 35 1 4.8417 5.3781 -0.9219 36 1 7.5130 5.5556 0.4666 37 1 6.9222 6.4329 -0.9794 38 1 5.6381 7.9820 0.3508 39 1 7.0964 7.7532 1.3686 40 1 4.6716 7.2848 2.4473 41 1 5.9991 6.1275 2.7699 42 1 3.6129 5.8439 0.9480 43 1 4.5047 4.5847 1.8473 44 1 0.8911 -2.5588 -0.4992 45 1 2.5844 -3.1075 -0.4970 46 1 0.7225 -5.9680 0.8848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605192814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:06 Heat of formation + Delta-G solvation = -63.141777 kcal Electronic energy + Delta-G solvation = -29169.934652 eV Core-core repulsion = 25060.742885 eV Total energy + Delta-G solvation = -4109.191767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42610 -40.48058 -39.31156 -38.03485 -36.44355 -34.85834 -33.40511 -32.51203 -31.36117 -30.76413 -28.91269 -27.25290 -26.46404 -26.24472 -23.70471 -22.70637 -21.30941 -20.83559 -20.04943 -19.75286 -19.05960 -18.55212 -17.37695 -16.92158 -16.67295 -16.28195 -15.88310 -15.57386 -15.28075 -14.91989 -14.76539 -14.37603 -14.08921 -13.97488 -13.56077 -13.42369 -13.03080 -12.73697 -12.48193 -12.29260 -12.16456 -11.95374 -11.74004 -11.65026 -11.47494 -11.39744 -11.28706 -11.23715 -11.08019 -10.92676 -10.84613 -10.72042 -10.63157 -10.41541 -10.24332 -9.95781 -9.63145 -9.50450 -8.64467 -7.92437 -7.44927 -6.25209 -4.32664 1.77608 1.98716 2.62825 2.76138 3.00826 3.20220 3.28093 3.34011 3.73938 3.75659 4.08232 4.28257 4.33178 4.35631 4.56098 4.75576 4.88403 4.91438 5.08620 5.25162 5.29783 5.35284 5.42984 5.46180 5.48810 5.68260 5.71163 5.72914 5.89679 5.92553 6.04658 6.09103 6.11799 6.12596 6.18100 6.24424 6.44335 6.52746 6.70377 6.93474 7.06770 7.43570 7.48516 7.61268 7.67787 7.89410 8.05982 8.15095 8.66024 8.75891 9.33564 10.82170 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.002558 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.887916 B =10943.458278 C =11345.059573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.266 3.734 5 N -0.617 5.617 6 C 0.537 3.463 7 O -0.498 6.498 8 C -0.094 4.094 9 H 0.137 0.863 10 C 0.486 3.514 11 O -0.496 6.496 12 O -0.506 6.506 13 C -0.068 4.068 14 C -0.115 4.115 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.108 4.108 18 N -0.318 5.318 19 N -0.316 5.316 20 C 0.258 3.742 21 C -0.534 4.534 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.892 5.892 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.281 1.281 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.409 0.591 34 H 0.412 0.588 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.432 23.120 -1.392 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.013 3.987 5 N -0.263 5.263 6 C 0.320 3.680 7 O -0.371 6.371 8 C -0.116 4.116 9 H 0.155 0.845 10 C 0.326 3.674 11 O -0.382 6.382 12 O -0.319 6.319 13 C -0.087 4.087 14 C -0.153 4.153 15 C -0.163 4.163 16 C -0.166 4.166 17 C -0.146 4.146 18 N -0.149 5.149 19 N -0.098 5.098 20 C 0.140 3.860 21 C -0.573 4.573 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.530 5.530 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.207 1.207 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.244 0.756 34 H 0.271 0.729 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.929 21.973 -1.312 24.576 hybrid contribution 0.367 -0.376 0.345 0.629 sum 11.295 21.597 -0.966 24.391 Atomic orbital electron populations 1.20331 0.87860 1.02839 1.03154 1.21061 0.94913 0.87161 1.00896 1.21208 0.89626 0.99765 1.21416 1.18922 0.87025 0.89586 1.03154 1.42305 1.07734 1.04803 1.71463 1.19561 0.89999 0.81477 0.76937 1.90679 1.25551 1.73593 1.47249 1.21498 0.94481 0.98760 0.96866 0.84538 1.22840 0.79504 0.78011 0.86997 1.90870 1.69575 1.31755 1.46003 1.84551 1.35317 1.63103 1.48894 1.21603 0.97432 0.88433 1.01194 1.22475 0.96534 0.95763 1.00481 1.22513 0.99438 0.97337 0.96992 1.22435 0.98641 0.97784 0.97761 1.22118 0.98905 0.98869 0.94700 1.77267 0.99900 1.08520 1.29209 1.48998 1.00962 1.07813 1.52060 1.19701 0.95992 0.71330 0.98963 1.21353 1.46636 0.97953 0.91341 0.91701 1.24933 0.94707 0.96056 0.98154 1.69932 1.45037 1.06900 1.31104 0.86299 0.77862 0.78772 0.83738 1.19582 1.20635 1.20673 0.90408 0.90825 0.90859 0.82335 0.75570 0.72851 0.89606 0.90569 0.91157 0.91522 0.91536 0.91638 0.91665 0.90630 0.91422 0.92769 0.92997 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.08 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -6.04 9.52 -39.83 -0.38 -6.41 16 4 C 0.27 5.59 8.11 -154.39 -1.25 4.33 16 5 N -0.62 -10.14 4.84 -11.13 -0.05 -10.20 16 6 C 0.54 7.73 6.02 -10.99 -0.07 7.66 16 7 O -0.50 -8.31 11.84 5.54 0.07 -8.24 16 8 C -0.09 -0.90 1.95 -92.93 -0.18 -1.09 16 9 H 0.14 0.95 8.13 -51.93 -0.42 0.53 16 10 C 0.49 4.73 7.47 36.01 0.27 5.00 16 11 O -0.50 -6.86 16.15 -18.75 -0.30 -7.16 16 12 O -0.51 -3.04 11.20 -39.24 -0.44 -3.48 16 13 C -0.07 -0.59 2.11 -89.50 -0.19 -0.78 16 14 C -0.12 -0.76 4.81 -25.03 -0.12 -0.88 16 15 C -0.13 -0.78 6.91 -24.70 -0.17 -0.95 16 16 C -0.13 -0.92 6.83 -25.08 -0.17 -1.09 16 17 C -0.11 -1.00 5.10 -25.61 -0.13 -1.13 16 18 N -0.32 -7.59 12.59 31.44 0.40 -7.20 16 19 N -0.32 -7.66 3.59 -58.33 -0.21 -7.87 16 20 C 0.26 6.72 5.99 -5.19 -0.03 6.69 16 21 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 22 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 25 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 32 H 0.16 3.16 5.92 -52.49 -0.31 2.85 16 33 H 0.41 5.84 8.51 -40.82 -0.35 5.50 16 34 H 0.41 0.97 9.10 45.56 0.41 1.38 16 35 H 0.09 0.86 8.12 -51.92 -0.42 0.44 16 36 H 0.08 0.47 7.32 -51.93 -0.38 0.09 16 37 H 0.07 0.45 7.96 -51.93 -0.41 0.03 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.70 6.95 -51.93 -0.36 0.34 16 44 H 0.05 1.39 7.04 -51.93 -0.37 1.03 16 45 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -34.45 378.43 -8.08 -42.52 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.90 Total: 6.08 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.05 Total: -1.83 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.87 Total: -49.76 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.68 Total: -18.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.45 -8.08 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605192814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.620 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds