Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35237 * 126.06788 * 2 1 4 4 C 1.40408 * 107.86509 * 180.17876 * 3 2 1 5 5 N 1.40161 * 125.97091 * 179.82702 * 4 3 2 6 6 C 1.34775 * 120.00377 * 359.72765 * 5 4 3 7 7 O 1.21296 * 119.99488 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00466 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.46894 * 299.99734 * 8 6 5 10 10 C 1.50706 * 109.47327 * 59.99534 * 8 6 5 11 11 O 1.20825 * 119.99859 * 359.97438 * 10 8 6 12 12 O 1.34224 * 120.00295 * 180.02562 * 10 8 6 13 13 C 1.52997 * 109.47528 * 179.97438 * 8 6 5 14 14 C 1.54268 * 110.03671 * 177.90746 * 13 8 6 15 15 C 1.54962 * 104.15993 * 217.13910 * 14 13 8 16 16 C 1.54885 * 102.77961 * 37.88261 * 15 14 13 17 17 C 1.53880 * 110.03185 * 60.68785 * 13 8 6 18 18 N 1.31213 * 108.05418 * 359.57305 * 4 3 2 19 19 N 1.34968 * 126.06951 * 179.71035 * 2 1 3 20 20 C 1.46501 * 125.97578 * 359.94200 * 19 2 1 21 21 C 1.50699 * 109.47048 * 270.01496 * 20 19 2 22 22 H 1.07996 * 120.00150 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99870 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99957 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99991 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46984 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47404 * 120.00018 * 25 23 21 28 28 H 1.48500 * 109.47365 * 239.99943 * 25 23 21 29 29 H 1.09002 * 109.47374 * 270.28983 * 1 2 3 30 30 H 1.09000 * 109.47344 * 30.28896 * 1 2 3 31 31 H 1.09000 * 109.46992 * 150.29144 * 1 2 3 32 32 H 1.07999 * 126.06737 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99889 * 179.71571 * 5 4 3 34 34 H 0.96700 * 117.00196 * 179.97438 * 12 10 8 35 35 H 1.09008 * 110.01679 * 299.29973 * 13 8 6 36 36 H 1.08998 * 110.48040 * 335.78552 * 14 13 8 37 37 H 1.08995 * 110.48852 * 98.42322 * 14 13 8 38 38 H 1.09001 * 110.71770 * 279.56941 * 15 14 13 39 39 H 1.09003 * 110.92572 * 156.29570 * 15 14 13 40 40 H 1.09001 * 110.48960 * 203.40125 * 16 15 14 41 41 H 1.09010 * 110.59807 * 80.82249 * 16 15 14 42 42 H 1.08998 * 110.03146 * 238.57157 * 17 13 8 43 43 H 1.09002 * 110.03024 * 359.95420 * 17 13 8 44 44 H 1.09002 * 109.46862 * 30.01914 * 20 19 2 45 45 H 1.09002 * 109.46918 * 150.01335 * 20 19 2 46 46 H 0.97003 * 119.99862 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6545 -0.0042 5 7 4.7734 1.4749 -0.0090 6 6 4.6366 2.8157 -0.0154 7 8 3.5300 3.3124 -0.0176 8 6 5.8584 3.6978 -0.0200 9 1 6.4539 3.4982 0.8709 10 6 6.6814 3.4099 -1.2492 11 8 6.3137 2.5738 -2.0402 12 8 7.8233 4.0815 -1.4649 13 6 5.4277 5.1659 -0.0276 14 6 6.6686 6.0811 0.0206 15 6 6.2314 7.2656 0.9190 16 6 5.3670 6.5734 2.0019 17 6 4.6001 5.4789 1.2314 18 7 3.6336 -0.6576 0.0027 19 7 2.3016 -1.0909 0.0055 20 6 1.8500 -2.4846 0.0138 21 6 1.6960 -2.9543 1.4374 22 1 1.9124 -2.2819 2.2543 23 6 1.2788 -4.2425 1.6969 24 7 1.0157 -5.0615 0.7021 25 14 1.0871 -4.8245 3.4615 26 1 1.4432 -3.7202 4.3884 27 1 -0.3204 -5.2349 3.6974 28 1 1.9868 -5.9813 3.7017 29 1 -0.3634 0.0052 1.0276 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9719 2.1211 0.0004 33 1 5.6583 1.0777 -0.0074 34 1 8.3171 3.8619 -2.2668 35 1 4.8417 5.3781 -0.9219 36 1 7.5130 5.5556 0.4666 37 1 6.9222 6.4329 -0.9794 38 1 5.6381 7.9820 0.3508 39 1 7.0964 7.7532 1.3686 40 1 4.6716 7.2848 2.4473 41 1 5.9991 6.1275 2.7699 42 1 3.6129 5.8439 0.9480 43 1 4.5047 4.5847 1.8473 44 1 0.8911 -2.5588 -0.4992 45 1 2.5844 -3.1075 -0.4970 46 1 0.7225 -5.9680 0.8848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605192814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = -85.465617 kcal Electronic energy + Delta-G solvation = -29170.902687 eV Core-core repulsion = 25060.742885 eV Total energy + Delta-G solvation = -4110.159801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.56540 -41.87122 -40.37892 -38.81429 -37.16197 -36.36850 -35.32821 -33.54708 -32.84014 -32.52419 -29.51642 -28.77274 -27.92963 -27.52396 -25.22750 -24.10476 -22.46250 -21.40328 -21.35033 -20.93306 -20.37144 -19.29833 -18.82090 -18.24325 -17.94613 -17.70495 -17.16198 -16.72240 -16.46863 -16.13043 -16.07590 -15.56440 -15.39460 -15.27837 -14.71939 -14.37034 -14.22096 -14.09962 -13.83609 -13.73589 -13.54547 -13.41467 -13.14325 -12.87132 -12.69324 -12.66651 -12.46307 -12.28984 -12.15874 -12.09767 -11.83292 -11.79907 -11.57913 -11.50864 -11.43345 -11.35608 -11.31821 -10.97679 -10.74845 -9.61682 -9.17475 -8.34195 -6.51967 0.75420 1.01580 1.23663 1.27287 1.36531 1.38618 1.51657 1.90660 2.21249 2.29790 2.37018 2.95586 3.13673 3.47206 3.70868 3.80491 3.90391 4.07397 4.12655 4.24612 4.30014 4.41877 4.63363 4.68212 4.69709 4.74382 4.76156 4.82357 4.87004 4.93022 4.95756 4.96316 5.10287 5.15051 5.19847 5.21399 5.35404 5.45491 5.46177 5.52038 5.52613 5.59839 5.79106 5.89382 6.15764 6.24030 6.60283 6.86760 6.88428 7.02026 7.19056 8.72326 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.002558 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.887916 B =10943.458278 C =11345.059573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.087 3.913 3 C -0.297 4.297 4 C 0.273 3.727 5 N -0.616 5.616 6 C 0.534 3.466 7 O -0.522 6.522 8 C -0.085 4.085 9 H 0.172 0.828 10 C 0.499 3.501 11 O -0.542 6.542 12 O -0.487 6.487 13 C -0.065 4.065 14 C -0.108 4.108 15 C -0.122 4.122 16 C -0.125 4.125 17 C -0.110 4.110 18 N -0.360 5.360 19 N -0.342 5.342 20 C 0.274 3.726 21 C -0.551 4.551 22 H 0.050 0.950 23 C 0.022 3.978 24 N -0.919 5.919 25 Si 0.974 3.026 26 H -0.273 1.273 27 H -0.266 1.266 28 H -0.274 1.274 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.170 0.830 33 H 0.419 0.581 34 H 0.432 0.568 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.650 25.045 -0.274 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.328 4.328 4 C 0.019 3.981 5 N -0.264 5.264 6 C 0.320 3.680 7 O -0.395 6.395 8 C -0.107 4.107 9 H 0.189 0.811 10 C 0.342 3.658 11 O -0.432 6.432 12 O -0.300 6.300 13 C -0.084 4.084 14 C -0.145 4.145 15 C -0.159 4.159 16 C -0.163 4.163 17 C -0.147 4.147 18 N -0.190 5.190 19 N -0.124 5.124 20 C 0.156 3.844 21 C -0.590 4.590 22 H 0.068 0.932 23 C -0.179 4.179 24 N -0.557 5.557 25 Si 0.798 3.202 26 H -0.197 1.197 27 H -0.191 1.191 28 H -0.200 1.200 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.187 0.813 33 H 0.255 0.745 34 H 0.295 0.705 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.190 23.948 -0.209 26.873 hybrid contribution 0.048 -0.831 -0.057 0.834 sum 12.237 23.118 -0.267 26.158 Atomic orbital electron populations 1.20474 0.85176 1.04209 1.04069 1.21777 0.96733 0.86414 0.99384 1.21418 0.89662 1.00009 1.21683 1.19309 0.88735 0.89256 1.00798 1.42532 1.06914 1.05215 1.71745 1.20450 0.91414 0.80869 0.75241 1.90652 1.27192 1.73824 1.47875 1.21500 0.92758 0.97863 0.98584 0.81138 1.22654 0.79925 0.77168 0.86081 1.90875 1.70915 1.33963 1.47485 1.84490 1.33763 1.61738 1.50037 1.21610 0.98447 0.88125 1.00217 1.22460 0.95531 0.95323 1.01171 1.22514 0.99789 0.97119 0.96523 1.22425 0.98710 0.97138 0.98018 1.22089 0.98636 0.99005 0.95008 1.77180 1.00161 1.10103 1.31602 1.48803 1.01707 1.07608 1.54325 1.19265 0.94863 0.72361 0.97949 1.21447 1.47502 0.98406 0.91610 0.93175 1.25763 0.93908 0.95851 1.02421 1.70016 1.45141 1.07390 1.33169 0.85269 0.78499 0.78083 0.78378 1.19743 1.19120 1.19988 0.89592 0.87542 0.91318 0.81316 0.74467 0.70487 0.91274 0.89241 0.90489 0.91622 0.89932 0.91482 0.90757 0.92348 0.92865 0.92970 0.95953 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.23 0.72 -2.06 16 2 C 0.09 3.81 6.92 41.38 0.29 4.09 16 3 C -0.30 -12.54 9.52 22.11 0.21 -12.33 16 4 C 0.27 11.72 8.11 133.33 1.08 12.80 16 5 N -0.62 -20.34 4.84 -307.52 -1.49 -21.83 16 6 C 0.53 15.17 6.02 87.66 0.53 15.70 16 7 O -0.52 -17.44 11.84 -3.08 -0.04 -17.48 16 8 C -0.09 -1.50 1.95 -12.29 -0.02 -1.52 16 9 H 0.17 1.86 8.13 -2.39 -0.02 1.84 16 10 C 0.50 8.76 7.47 71.24 0.53 9.29 16 11 O -0.54 -14.62 16.15 21.97 0.35 -14.27 16 12 O -0.49 -4.25 11.20 -51.35 -0.58 -4.83 16 13 C -0.06 -1.03 2.11 -10.07 -0.02 -1.05 16 14 C -0.11 -1.08 4.81 31.70 0.15 -0.93 16 15 C -0.12 -1.17 6.91 31.91 0.22 -0.95 16 16 C -0.13 -1.52 6.83 31.67 0.22 -1.30 16 17 C -0.11 -1.91 5.10 31.32 0.16 -1.75 16 18 N -0.36 -17.79 12.59 -54.45 -0.69 -18.47 16 19 N -0.34 -17.19 3.59 -338.45 -1.22 -18.41 16 20 C 0.27 14.93 5.99 85.63 0.51 15.44 16 21 C -0.55 -31.43 9.39 25.60 0.24 -31.19 16 22 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 23 C 0.02 1.19 5.46 84.65 0.46 1.65 16 24 N -0.92 -52.55 13.29 21.45 0.28 -52.26 16 25 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.79 16 30 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.07 2.41 7.07 -2.39 -0.02 2.39 16 32 H 0.17 6.73 5.92 -2.91 -0.02 6.71 16 33 H 0.42 11.96 8.51 -92.71 -0.79 11.17 16 34 H 0.43 0.61 9.10 -74.06 -0.67 -0.07 16 35 H 0.07 1.34 8.12 -2.38 -0.02 1.32 16 36 H 0.09 0.70 7.32 -2.39 -0.02 0.69 16 37 H 0.08 0.71 7.96 -2.39 -0.02 0.69 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.05 1.07 6.95 -2.39 -0.02 1.05 16 44 H 0.05 2.80 7.04 -2.39 -0.02 2.79 16 45 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.27 14.54 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -76.71 378.43 3.51 -73.20 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.43 Total: 22.98 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.28 Total: 5.90 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -3.11 Total: -110.97 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.26 Total: -36.57 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -76.71 3.51 -73.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605192814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.265 kcal (2) G-P(sol) polarization free energy of solvation -76.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds