Wall clock time and date at job start Tue Mar 31 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35240 * 126.06750 * 2 1 4 4 C 1.40413 * 107.86715 * 180.26893 * 3 2 1 5 5 N 1.40160 * 125.97086 * 179.73885 * 4 3 2 6 6 C 1.34776 * 120.00323 * 359.97438 * 5 4 3 7 7 O 1.21290 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.99902 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.47200 * 59.99833 * 8 6 5 10 10 C 1.52993 * 109.47373 * 300.00109 * 8 6 5 11 11 C 1.53002 * 109.47253 * 299.99953 * 10 8 6 12 12 C 1.53001 * 109.47170 * 300.00249 * 11 10 8 13 13 C 1.53001 * 109.47237 * 59.99488 * 12 11 10 14 14 H 1.09002 * 109.46676 * 59.99909 * 13 12 11 15 15 C 1.50692 * 109.47176 * 180.02562 * 13 12 11 16 16 O 1.20823 * 120.00534 * 120.00203 * 15 13 12 17 17 O 1.34236 * 119.99744 * 299.99851 * 15 13 12 18 18 C 1.52996 * 109.47115 * 180.02562 * 8 6 5 19 19 N 1.31216 * 108.05293 * 359.75770 * 4 3 2 20 20 N 1.34966 * 126.07072 * 179.85493 * 2 1 3 21 21 C 1.46493 * 125.97684 * 0.02562 * 20 2 1 22 22 C 1.50706 * 109.47128 * 269.71099 * 21 20 2 23 23 H 1.08000 * 119.99302 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00436 * 179.72498 * 22 21 20 25 25 N 1.31514 * 120.00481 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99745 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47209 * 90.00365 * 26 24 22 28 28 H 1.48506 * 109.47294 * 210.00213 * 26 24 22 29 29 H 1.48501 * 109.47275 * 330.00116 * 26 24 22 30 30 H 1.09002 * 109.47116 * 270.14253 * 1 2 3 31 31 H 1.08995 * 109.47279 * 30.14268 * 1 2 3 32 32 H 1.09002 * 109.46950 * 150.14665 * 1 2 3 33 33 H 1.07997 * 126.06852 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99552 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47303 * 60.00142 * 10 8 6 36 36 H 1.09005 * 109.47577 * 180.02562 * 10 8 6 37 37 H 1.09008 * 109.47041 * 59.99999 * 11 10 8 38 38 H 1.09000 * 109.47257 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.47171 * 179.97438 * 12 11 10 40 40 H 1.09008 * 109.46934 * 299.99816 * 12 11 10 41 41 H 0.96704 * 116.99939 * 179.97438 * 17 15 13 42 42 H 1.09002 * 109.47669 * 180.02562 * 18 8 6 43 43 H 1.09000 * 109.47295 * 300.00142 * 18 8 6 44 44 H 1.09001 * 109.47786 * 149.71372 * 21 20 2 45 45 H 1.08998 * 109.47558 * 29.71234 * 21 20 2 46 46 H 0.96995 * 120.00207 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 -0.0063 5 7 4.7734 1.4751 -0.0135 6 6 4.6366 2.8159 -0.0154 7 8 3.5301 3.3126 -0.0113 8 6 5.8584 3.6979 -0.0226 9 1 6.4498 3.4922 -0.9149 10 6 6.6997 3.4140 1.2233 11 6 5.8697 3.7026 2.4759 12 6 5.4389 5.1707 2.4750 13 6 4.5976 5.4546 1.2290 14 1 3.7138 4.8166 1.2343 15 6 4.1737 6.9007 1.2279 16 8 4.5016 7.6258 0.3187 17 8 3.4317 7.3834 2.2371 18 6 5.4276 5.1659 -0.0227 19 7 3.6337 -0.6575 -0.0046 20 7 2.3016 -1.0909 0.0028 21 6 1.8501 -2.4845 0.0058 22 6 1.7016 -2.9614 1.4276 23 1 1.9219 -2.2932 2.2470 24 6 1.2794 -4.2489 1.6825 25 7 1.1493 -4.6649 2.9233 26 14 0.8909 -5.4021 0.2652 27 1 2.1178 -6.1455 -0.1187 28 1 -0.1601 -6.3642 0.6837 29 1 0.4061 -4.6136 -0.8960 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3633 -0.8913 -0.5116 33 1 1.9719 2.1211 0.0004 34 1 5.6584 1.0778 -0.0171 35 1 7.0067 2.3681 1.2239 36 1 7.5833 4.0523 1.2184 37 1 4.9859 3.0646 2.4811 38 1 6.4690 3.4999 3.3635 39 1 4.8472 5.3762 3.3671 40 1 6.3227 5.8088 2.4698 41 1 3.1845 8.3172 2.1927 42 1 6.3113 5.8040 -0.0284 43 1 4.8280 5.3686 -0.9102 44 1 2.5824 -3.1050 -0.5108 45 1 0.8892 -2.5563 -0.5038 46 1 0.8520 -5.5706 3.1025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607678744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:25 Heat of formation + Delta-G solvation = -64.403480 kcal Electronic energy + Delta-G solvation = -29291.453070 eV Core-core repulsion = 25182.206591 eV Total energy + Delta-G solvation = -4109.246479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33090 -40.61056 -39.79018 -37.34842 -36.26374 -35.00887 -33.40363 -32.13254 -31.32588 -31.17238 -31.01077 -27.23709 -26.45235 -24.79793 -24.36017 -22.57776 -21.93987 -21.18571 -20.27338 -19.83577 -18.77241 -18.16609 -17.19230 -17.14019 -16.46643 -16.24630 -16.05887 -15.39244 -15.32975 -15.12056 -14.57003 -14.29902 -14.12863 -13.83469 -13.65933 -13.29540 -12.99199 -12.72939 -12.63801 -12.54813 -12.45825 -12.32334 -12.26744 -11.92583 -11.71888 -11.64543 -11.47366 -11.24202 -11.19965 -10.97546 -10.79058 -10.59653 -10.53025 -10.38505 -9.99444 -9.96930 -9.62044 -9.47239 -8.80935 -8.03963 -7.53079 -6.28924 -4.32191 2.04769 2.22537 2.66046 2.80818 2.86790 3.13428 3.19143 3.21756 3.62101 3.70846 4.18881 4.28612 4.35501 4.38065 4.68814 4.76722 4.83972 4.99555 5.00282 5.11545 5.14867 5.27967 5.33254 5.43105 5.56000 5.59888 5.64029 5.73344 5.79237 5.86115 5.88701 5.96925 6.00815 6.05270 6.19508 6.31167 6.33581 6.41280 6.50284 6.58448 6.69225 7.25827 7.35358 7.52742 7.72284 7.81481 8.17415 8.28369 8.53220 8.76166 9.26191 10.83585 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.002544 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.471394 B =11005.594877 C =11250.967261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.095 3.905 3 C -0.287 4.287 4 C 0.267 3.733 5 N -0.629 5.629 6 C 0.525 3.475 7 O -0.515 6.515 8 C -0.103 4.103 9 H 0.108 0.892 10 C -0.116 4.116 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.095 4.095 14 H 0.140 0.860 15 C 0.487 3.513 16 O -0.522 6.522 17 O -0.515 6.515 18 C -0.081 4.081 19 N -0.318 5.318 20 N -0.316 5.316 21 C 0.232 3.768 22 C -0.541 4.541 23 H 0.081 0.919 24 C 0.079 3.921 25 N -0.886 5.886 26 Si 0.874 3.126 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.264 1.264 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.407 0.593 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.050 0.950 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 19.800 -3.982 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.036 4.036 3 C -0.318 4.318 4 C 0.014 3.986 5 N -0.276 5.276 6 C 0.311 3.689 7 O -0.389 6.389 8 C -0.125 4.125 9 H 0.126 0.874 10 C -0.153 4.153 11 C -0.162 4.162 12 C -0.146 4.146 13 C -0.113 4.113 14 H 0.157 0.843 15 C 0.331 3.669 16 O -0.410 6.410 17 O -0.327 6.327 18 C -0.119 4.119 19 N -0.148 5.148 20 N -0.098 5.098 21 C 0.112 3.888 22 C -0.579 4.579 23 H 0.099 0.901 24 C -0.125 4.125 25 N -0.523 5.523 26 Si 0.700 3.300 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.189 1.189 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.179 0.821 34 H 0.246 0.754 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.265 0.735 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.833 18.608 -4.090 21.000 hybrid contribution -0.344 0.232 -0.573 0.708 sum 8.489 18.841 -4.663 21.184 Atomic orbital electron populations 1.20358 0.87816 1.02730 1.03481 1.21066 0.94915 0.87013 1.00604 1.21247 0.89675 0.99789 1.21077 1.19007 0.87365 0.89537 1.02728 1.42544 1.07467 1.05168 1.72415 1.20612 0.91326 0.81371 0.75564 1.90566 1.26995 1.73491 1.47845 1.21389 0.94832 0.94936 1.01294 0.87365 1.21629 0.98169 1.02631 0.92896 1.21603 1.00635 0.95986 0.98018 1.21523 0.99345 0.97269 0.96469 1.21410 1.02830 0.89476 0.97603 0.84298 1.23620 0.73824 0.91201 0.78303 1.90694 1.53708 1.60251 1.36373 1.84573 1.66054 1.33775 1.48262 1.21195 1.00080 0.93269 0.97336 1.77263 0.99404 1.08704 1.29466 1.48510 1.01263 1.07026 1.53027 1.20005 0.95299 0.73718 0.99741 1.21162 1.47292 0.99102 0.90326 0.90114 1.24803 0.94471 0.97452 0.95783 1.69868 1.45645 1.18242 1.18569 0.86895 0.79023 0.81474 0.82639 1.19625 1.20523 1.18891 0.90056 0.90650 0.91114 0.82145 0.75418 0.90775 0.90162 0.91111 0.90659 0.90422 0.91514 0.73514 0.90179 0.90059 0.93671 0.93234 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.39 10.11 36.00 0.36 -1.03 16 2 C 0.09 1.91 6.92 -82.28 -0.57 1.34 16 3 C -0.29 -5.57 9.52 -39.83 -0.38 -5.95 16 4 C 0.27 5.07 8.11 -154.39 -1.25 3.82 16 5 N -0.63 -8.75 5.34 -11.13 -0.06 -8.81 16 6 C 0.52 6.57 5.61 -10.99 -0.06 6.51 16 7 O -0.51 -7.89 10.79 5.55 0.06 -7.83 16 8 C -0.10 -0.86 3.01 -91.78 -0.28 -1.13 16 9 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 10 C -0.12 -0.79 5.35 -26.73 -0.14 -0.94 16 11 C -0.12 -1.04 5.70 -26.73 -0.15 -1.19 16 12 C -0.11 -0.90 5.13 -26.73 -0.14 -1.03 16 13 C -0.09 -0.96 2.33 -91.80 -0.21 -1.17 16 14 H 0.14 1.71 5.51 -51.93 -0.29 1.43 16 15 C 0.49 5.26 7.63 36.00 0.27 5.53 16 16 O -0.52 -6.88 16.74 -18.75 -0.31 -7.20 16 17 O -0.52 -4.45 13.33 -39.27 -0.52 -4.98 16 18 C -0.08 -0.75 3.66 -26.76 -0.10 -0.85 16 19 N -0.32 -6.98 12.59 31.44 0.40 -6.58 16 20 N -0.32 -7.16 3.59 -58.33 -0.21 -7.37 16 21 C 0.23 5.48 5.06 -5.19 -0.03 5.45 16 22 C -0.54 -14.93 9.94 -34.44 -0.34 -15.28 16 23 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 24 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 25 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 26 Si 0.87 19.92 27.47 -169.99 -4.67 15.25 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.26 -5.63 6.53 56.52 0.37 -5.26 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.12 7.06 -51.93 -0.37 0.76 16 33 H 0.16 2.99 5.92 -52.49 -0.31 2.68 16 34 H 0.41 4.55 8.24 -40.82 -0.34 4.21 16 35 H 0.07 0.47 7.57 -51.93 -0.39 0.07 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.77 7.22 -51.92 -0.37 0.40 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 40 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 41 H 0.41 1.76 9.10 45.56 0.41 2.17 16 42 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 44 H 0.05 1.06 7.58 -51.93 -0.39 0.67 16 45 H 0.05 1.10 6.07 -51.93 -0.32 0.78 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -35.06 371.88 -7.80 -42.87 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.75 Total: 8.18 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -3.11 Total: -3.84 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.90 Total: -48.05 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.78 Total: -20.01 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.06 -7.80 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607678744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.538 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds