Wall clock time and date at job start Tue Mar 31 2020 18:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35240 * 126.06750 * 2 1 4 4 C 1.40413 * 107.86715 * 180.26893 * 3 2 1 5 5 N 1.40160 * 125.97086 * 179.73885 * 4 3 2 6 6 C 1.34776 * 120.00323 * 359.97438 * 5 4 3 7 7 O 1.21290 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.99902 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.47200 * 59.99833 * 8 6 5 10 10 C 1.52993 * 109.47373 * 300.00109 * 8 6 5 11 11 C 1.53002 * 109.47253 * 299.99953 * 10 8 6 12 12 C 1.53001 * 109.47170 * 300.00249 * 11 10 8 13 13 C 1.53001 * 109.47237 * 59.99488 * 12 11 10 14 14 H 1.09002 * 109.46676 * 59.99909 * 13 12 11 15 15 C 1.50692 * 109.47176 * 180.02562 * 13 12 11 16 16 O 1.20823 * 120.00534 * 120.00203 * 15 13 12 17 17 O 1.34236 * 119.99744 * 299.99851 * 15 13 12 18 18 C 1.52996 * 109.47115 * 180.02562 * 8 6 5 19 19 N 1.31216 * 108.05293 * 359.75770 * 4 3 2 20 20 N 1.34966 * 126.07072 * 179.85493 * 2 1 3 21 21 C 1.46493 * 125.97684 * 0.02562 * 20 2 1 22 22 C 1.50706 * 109.47128 * 269.71099 * 21 20 2 23 23 H 1.08000 * 119.99302 * 359.97438 * 22 21 20 24 24 C 1.37871 * 120.00436 * 179.72498 * 22 21 20 25 25 N 1.31514 * 120.00481 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99745 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47209 * 90.00365 * 26 24 22 28 28 H 1.48506 * 109.47294 * 210.00213 * 26 24 22 29 29 H 1.48501 * 109.47275 * 330.00116 * 26 24 22 30 30 H 1.09002 * 109.47116 * 270.14253 * 1 2 3 31 31 H 1.08995 * 109.47279 * 30.14268 * 1 2 3 32 32 H 1.09002 * 109.46950 * 150.14665 * 1 2 3 33 33 H 1.07997 * 126.06852 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99552 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.47303 * 60.00142 * 10 8 6 36 36 H 1.09005 * 109.47577 * 180.02562 * 10 8 6 37 37 H 1.09008 * 109.47041 * 59.99999 * 11 10 8 38 38 H 1.09000 * 109.47257 * 179.97438 * 11 10 8 39 39 H 1.09002 * 109.47171 * 179.97438 * 12 11 10 40 40 H 1.09008 * 109.46934 * 299.99816 * 12 11 10 41 41 H 0.96704 * 116.99939 * 179.97438 * 17 15 13 42 42 H 1.09002 * 109.47669 * 180.02562 * 18 8 6 43 43 H 1.09000 * 109.47295 * 300.00142 * 18 8 6 44 44 H 1.09001 * 109.47786 * 149.71372 * 21 20 2 45 45 H 1.08998 * 109.47558 * 29.71234 * 21 20 2 46 46 H 0.96995 * 120.00207 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 -0.0063 5 7 4.7734 1.4751 -0.0135 6 6 4.6366 2.8159 -0.0154 7 8 3.5301 3.3126 -0.0113 8 6 5.8584 3.6979 -0.0226 9 1 6.4498 3.4922 -0.9149 10 6 6.6997 3.4140 1.2233 11 6 5.8697 3.7026 2.4759 12 6 5.4389 5.1707 2.4750 13 6 4.5976 5.4546 1.2290 14 1 3.7138 4.8166 1.2343 15 6 4.1737 6.9007 1.2279 16 8 4.5016 7.6258 0.3187 17 8 3.4317 7.3834 2.2371 18 6 5.4276 5.1659 -0.0227 19 7 3.6337 -0.6575 -0.0046 20 7 2.3016 -1.0909 0.0028 21 6 1.8501 -2.4845 0.0058 22 6 1.7016 -2.9614 1.4276 23 1 1.9219 -2.2932 2.2470 24 6 1.2794 -4.2489 1.6825 25 7 1.1493 -4.6649 2.9233 26 14 0.8909 -5.4021 0.2652 27 1 2.1178 -6.1455 -0.1187 28 1 -0.1601 -6.3642 0.6837 29 1 0.4061 -4.6136 -0.8960 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3633 -0.8913 -0.5116 33 1 1.9719 2.1211 0.0004 34 1 5.6584 1.0778 -0.0171 35 1 7.0067 2.3681 1.2239 36 1 7.5833 4.0523 1.2184 37 1 4.9859 3.0646 2.4811 38 1 6.4690 3.4999 3.3635 39 1 4.8472 5.3762 3.3671 40 1 6.3227 5.8088 2.4698 41 1 3.1845 8.3172 2.1927 42 1 6.3113 5.8040 -0.0284 43 1 4.8280 5.3686 -0.9102 44 1 2.5824 -3.1050 -0.5108 45 1 0.8892 -2.5563 -0.5038 46 1 0.8520 -5.5706 3.1025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607678744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:25 Heat of formation + Delta-G solvation = -88.704537 kcal Electronic energy + Delta-G solvation = -29292.506843 eV Core-core repulsion = 25182.206591 eV Total energy + Delta-G solvation = -4110.300251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47334 -41.78707 -40.81719 -38.22454 -37.07884 -36.34401 -35.26350 -33.46810 -32.80769 -32.27149 -31.87494 -29.02475 -27.89858 -25.53119 -25.49116 -24.18793 -22.83106 -22.11529 -21.38523 -21.20572 -19.99527 -19.23675 -19.00168 -18.01464 -17.67757 -17.43499 -17.04216 -16.84973 -16.52554 -16.12589 -15.86316 -15.52819 -15.29760 -14.92066 -14.75845 -14.51688 -14.49560 -13.87783 -13.77316 -13.71751 -13.61457 -13.41850 -13.32396 -13.11389 -13.06898 -12.82656 -12.57768 -12.53035 -12.32627 -12.14190 -11.89950 -11.83716 -11.75216 -11.52723 -11.37561 -11.19914 -11.13140 -10.90192 -10.55963 -9.58762 -9.09282 -8.40602 -6.51661 0.90141 1.20702 1.30354 1.37126 1.38067 1.44448 1.47901 2.15633 2.21875 2.26301 2.34107 2.91984 3.48199 3.60252 3.67484 3.82871 4.00866 4.07485 4.11189 4.14527 4.32621 4.40494 4.46342 4.47278 4.51874 4.63941 4.74798 4.77938 4.79796 4.84773 4.95272 4.98931 4.99969 5.08536 5.12129 5.18024 5.21554 5.23372 5.26804 5.30095 5.41886 5.62590 5.89256 6.01052 6.27617 6.37146 6.52115 6.97721 7.00945 7.12278 7.15199 8.76079 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020576 B = 0.002544 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.471394 B =11005.594877 C =11250.967261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.276 3.724 5 N -0.622 5.622 6 C 0.523 3.477 7 O -0.543 6.543 8 C -0.090 4.090 9 H 0.141 0.859 10 C -0.112 4.112 11 C -0.126 4.126 12 C -0.103 4.103 13 C -0.097 4.097 14 H 0.114 0.886 15 C 0.491 3.509 16 O -0.549 6.549 17 O -0.515 6.515 18 C -0.079 4.079 19 N -0.356 5.356 20 N -0.344 5.344 21 C 0.241 3.759 22 C -0.549 4.549 23 H 0.024 0.976 24 C 0.022 3.978 25 N -0.938 5.938 26 Si 0.950 3.050 27 H -0.265 1.265 28 H -0.275 1.275 29 H -0.234 1.234 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.424 0.576 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.037 0.963 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.425 0.575 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.940 20.565 -5.732 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.042 4.042 3 C -0.329 4.329 4 C 0.022 3.978 5 N -0.272 5.272 6 C 0.312 3.688 7 O -0.419 6.419 8 C -0.111 4.111 9 H 0.159 0.841 10 C -0.150 4.150 11 C -0.164 4.164 12 C -0.140 4.140 13 C -0.115 4.115 14 H 0.131 0.869 15 C 0.335 3.665 16 O -0.440 6.440 17 O -0.328 6.328 18 C -0.116 4.116 19 N -0.186 5.186 20 N -0.126 5.126 21 C 0.121 3.879 22 C -0.588 4.588 23 H 0.042 0.958 24 C -0.178 4.178 25 N -0.576 5.576 26 Si 0.771 3.229 27 H -0.190 1.190 28 H -0.200 1.200 29 H -0.157 1.157 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.184 0.816 34 H 0.262 0.738 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.286 0.714 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.997 19.426 -5.832 22.612 hybrid contribution -0.698 0.199 0.117 0.735 sum 9.299 19.625 -5.714 22.456 Atomic orbital electron populations 1.20497 0.85403 1.04622 1.03748 1.21744 0.96630 0.86536 0.99335 1.21450 0.90086 0.99888 1.21439 1.19377 0.89005 0.89204 1.00259 1.42732 1.06744 1.05279 1.72423 1.21565 0.92479 0.80866 0.73910 1.90556 1.28760 1.73799 1.48771 1.21472 0.92986 0.93000 1.03668 0.84112 1.21699 0.98396 1.04023 0.90856 1.21612 0.99769 0.95277 0.99701 1.21503 0.99678 0.97605 0.95222 1.21401 1.02373 0.88644 0.99121 0.86891 1.23726 0.73433 0.91297 0.78033 1.90681 1.54928 1.60997 1.37348 1.84538 1.65372 1.35496 1.47405 1.21202 1.00366 0.94080 0.95992 1.77173 0.99601 1.10170 1.31667 1.48415 1.01979 1.07011 1.55169 1.19768 0.96376 0.74715 0.97003 1.21243 1.47570 0.98786 0.91156 0.95798 1.25822 0.93775 0.99215 0.98986 1.70029 1.46953 1.19113 1.21500 0.85687 0.79062 0.78822 0.79286 1.18981 1.19980 1.15742 0.90464 0.87487 0.90476 0.81588 0.73764 0.89824 0.87054 0.94451 0.89315 0.90972 0.89469 0.71360 0.88183 0.91936 0.93382 0.90986 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.70 10.11 71.23 0.72 -1.98 16 2 C 0.09 3.54 6.92 41.38 0.29 3.83 16 3 C -0.30 -11.69 9.52 22.11 0.21 -11.48 16 4 C 0.28 10.60 8.11 133.33 1.08 11.68 16 5 N -0.62 -16.94 5.34 -307.52 -1.64 -18.59 16 6 C 0.52 12.66 5.61 87.65 0.49 13.15 16 7 O -0.54 -16.77 10.79 -3.06 -0.03 -16.80 16 8 C -0.09 -1.28 3.01 -11.55 -0.03 -1.31 16 9 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 10 C -0.11 -1.19 5.35 30.59 0.16 -1.03 16 11 C -0.13 -1.91 5.70 30.60 0.17 -1.73 16 12 C -0.10 -1.53 5.13 30.60 0.16 -1.38 16 13 C -0.10 -1.88 2.33 -11.56 -0.03 -1.90 16 14 H 0.11 2.86 5.51 -2.39 -0.01 2.85 16 15 C 0.49 10.22 7.63 71.23 0.54 10.76 16 16 O -0.55 -14.04 16.74 21.97 0.37 -13.67 16 17 O -0.51 -8.46 13.33 -51.47 -0.69 -9.14 16 18 C -0.08 -1.32 3.66 30.58 0.11 -1.20 16 19 N -0.36 -15.89 12.59 -54.45 -0.69 -16.58 16 20 N -0.34 -15.78 3.59 -338.46 -1.22 -17.00 16 21 C 0.24 11.41 5.06 85.64 0.43 11.85 16 22 C -0.55 -31.37 9.94 25.60 0.25 -31.11 16 23 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 24 C 0.02 1.21 5.47 84.65 0.46 1.68 16 25 N -0.94 -56.81 13.96 21.45 0.30 -56.51 16 26 Si 0.95 40.55 27.47 68.60 1.88 42.43 16 27 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.23 -8.82 6.53 99.48 0.65 -8.17 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 2.34 7.06 -2.39 -0.02 2.32 16 33 H 0.17 6.28 5.92 -2.91 -0.02 6.26 16 34 H 0.42 8.89 8.24 -92.71 -0.76 8.12 16 35 H 0.08 0.78 7.57 -2.38 -0.02 0.76 16 36 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.04 0.81 7.22 -2.38 -0.02 0.80 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 40 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.42 3.19 9.10 -74.05 -0.67 2.52 16 42 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 43 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 44 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 45 H 0.07 3.06 6.07 -2.39 -0.01 3.04 16 46 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -80.52 371.88 2.86 -77.66 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.46 Total: 28.38 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.03 Total: -0.18 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.25 Total: -108.68 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.35 Total: -39.62 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.88 Total: 42.43 kcal Total: -80.52 2.86 -77.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607678744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.040 kcal (2) G-P(sol) polarization free energy of solvation -80.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds