Wall clock time and date at job start Tue Mar 31 2020 19:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35132 * 126.44412 * 2 1 4 4 O 1.33935 * 108.76968 * 179.77316 * 3 2 1 5 5 C 1.34914 * 109.38422 * 0.37471 * 4 3 2 6 6 C 1.46655 * 125.99026 * 179.89165 * 5 4 3 7 7 O 1.21701 * 120.00249 * 179.68952 * 6 5 4 8 8 N 1.34775 * 119.99988 * 359.68802 * 6 5 4 9 9 C 1.46497 * 120.00063 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.53964 * 35.09939 * 9 8 6 11 11 C 1.53120 * 109.50232 * 274.99699 * 9 8 6 12 12 C 1.53114 * 109.16161 * 182.40502 * 11 9 8 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 O 1.21295 * 120.00270 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99953 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00055 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99794 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99742 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99525 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00250 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47003 * 89.99818 * 23 21 19 25 25 H 1.48502 * 109.47064 * 209.99899 * 23 21 19 26 26 H 1.48502 * 109.46791 * 329.99396 * 23 21 19 27 27 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 28 28 C 1.36545 * 108.02352 * 359.62434 * 5 4 3 29 29 H 1.09001 * 109.47265 * 270.00225 * 1 2 3 30 30 H 1.08994 * 109.47217 * 30.00033 * 1 2 3 31 31 H 1.09001 * 109.47280 * 150.00553 * 1 2 3 32 32 H 1.07994 * 125.61536 * 0.02562 * 3 2 1 33 33 H 0.97003 * 119.99927 * 359.97438 * 8 6 5 34 34 H 1.08995 * 109.52336 * 62.50238 * 11 9 8 35 35 H 1.09001 * 109.57675 * 302.34588 * 11 9 8 36 36 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 37 37 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 38 38 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 39 39 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 40 40 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 41 41 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 42 42 H 0.97004 * 120.00345 * 0.02562 * 18 16 15 43 43 H 0.97003 * 119.99969 * 180.02562 * 22 21 19 44 44 H 1.08993 * 109.46639 * 178.24333 * 27 14 13 45 45 H 1.09010 * 109.45973 * 58.27499 * 27 14 13 46 46 H 1.08002 * 126.64598 * 180.18609 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0050 5 6 3.6261 -0.6681 0.0000 6 6 4.8379 -1.4941 0.0008 7 8 4.7471 -2.7077 0.0016 8 7 6.0521 -0.9092 0.0007 9 6 7.2626 -1.7343 0.0009 10 1 7.0905 -2.6342 -0.5895 11 6 7.6142 -2.1257 1.4389 12 6 8.9128 -2.9368 1.4358 13 6 10.0247 -2.1078 0.7889 14 7 9.6410 -1.7593 -0.5851 15 6 10.7417 -1.0821 -1.2835 16 6 11.8885 -2.0429 -1.4642 17 8 11.7977 -3.1801 -1.0523 18 7 13.0147 -1.6389 -2.0846 19 6 14.0579 -2.5131 -2.2496 20 1 13.9769 -3.5257 -1.8828 21 6 15.2191 -2.0964 -2.8887 22 7 16.2188 -2.9345 -3.0473 23 14 15.3593 -0.3448 -3.5226 24 1 15.9292 0.5220 -2.4600 25 1 16.2477 -0.3185 -4.7123 26 1 14.0125 0.1545 -3.8995 27 6 8.4224 -0.9402 -0.6045 28 6 2.3408 -1.1292 0.0001 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 1.9770 2.1145 0.0004 33 1 6.1245 0.0581 -0.0003 34 1 6.8093 -2.7285 1.8595 35 1 7.7479 -1.2263 2.0400 36 1 8.7667 -3.8557 0.8679 37 1 9.1912 -3.1821 2.4607 38 1 10.1799 -1.1957 1.3650 39 1 10.9474 -2.6879 0.7721 40 1 10.3970 -0.7400 -2.2593 41 1 11.0737 -0.2267 -0.6950 42 1 13.0873 -0.7295 -2.4145 43 1 17.0296 -2.6435 -3.4931 44 1 8.1812 -0.6722 -1.6330 45 1 8.5850 -0.0334 -0.0216 46 1 2.0267 -2.1625 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660837981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:30 Heat of formation + Delta-G solvation = -48.263382 kcal Electronic energy + Delta-G solvation = -28195.081750 eV Core-core repulsion = 24086.535159 eV Total energy + Delta-G solvation = -4108.546591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.10094 -40.16661 -38.99335 -37.68380 -35.11064 -34.53546 -33.88641 -32.75449 -31.64391 -31.12562 -29.65657 -27.78136 -27.51816 -24.66875 -24.26502 -22.84177 -22.21552 -21.51880 -20.39791 -19.78270 -19.35695 -18.37926 -18.19266 -16.76942 -16.72066 -16.47616 -16.01305 -15.35559 -14.98709 -14.92906 -14.90033 -14.40346 -14.03407 -13.97816 -13.69709 -13.63427 -13.57726 -13.35784 -13.30844 -13.09017 -13.01727 -12.59181 -12.33900 -12.15895 -11.99460 -11.60899 -11.39136 -11.18743 -10.90718 -10.72955 -10.60108 -10.59273 -10.35104 -10.12956 -9.97294 -9.52614 -9.38333 -8.97057 -8.57646 -8.18196 -7.99046 -6.30804 -3.82146 0.69274 1.88917 2.28527 2.82674 2.88320 3.02227 3.06091 3.14798 3.73318 3.94079 4.10222 4.25887 4.33440 4.50928 4.64906 4.67559 4.84367 4.90677 5.07103 5.14812 5.20060 5.20155 5.24790 5.27251 5.35917 5.48854 5.49885 5.53085 5.54583 5.62988 5.68367 5.78518 5.89533 5.92001 5.97088 6.02131 6.04930 6.14918 6.39452 6.45943 6.50882 7.11090 7.19206 7.28310 7.58599 7.80003 8.14945 8.60403 8.95645 9.42672 9.83504 10.82302 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.001968 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.556693 B =14227.122706 C =14901.110681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.011 4.011 4 O -0.163 6.163 5 C -0.074 4.074 6 C 0.604 3.396 7 O -0.514 6.514 8 N -0.714 5.714 9 C 0.148 3.852 10 H 0.104 0.896 11 C -0.129 4.129 12 C -0.110 4.110 13 C 0.049 3.951 14 N -0.511 5.511 15 C 0.045 3.955 16 C 0.453 3.547 17 O -0.557 6.557 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.051 3.949 28 C -0.118 4.118 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.209 0.791 33 H 0.403 0.597 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.080 0.920 45 H 0.035 0.965 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.222 13.255 7.344 32.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C -0.080 4.080 4 O -0.058 6.058 5 C -0.127 4.127 6 C 0.390 3.610 7 O -0.391 6.391 8 N -0.364 5.364 9 C 0.044 3.956 10 H 0.122 0.878 11 C -0.168 4.168 12 C -0.149 4.149 13 C -0.079 4.079 14 N -0.235 5.235 15 C -0.086 4.086 16 C 0.238 3.762 17 O -0.438 6.438 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.078 4.078 28 C -0.139 4.139 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.915 11.283 7.289 30.979 hybrid contribution 0.311 2.741 -0.233 2.768 sum -27.605 14.024 7.056 31.757 Atomic orbital electron populations 1.20191 0.88547 1.02968 1.02405 1.20515 0.97798 0.92402 1.08807 1.24209 0.79902 1.00074 1.03849 1.84054 1.29393 1.21706 1.70675 1.22102 0.96213 0.80526 1.13814 1.16511 0.81181 0.86411 0.76930 1.90918 1.85845 1.12155 1.50211 1.45926 1.05373 1.10721 1.74408 1.21050 0.82214 0.94811 0.97526 0.87832 1.21990 0.98688 1.00372 0.95735 1.21505 0.93280 0.99432 1.00665 1.22349 1.00570 0.98481 0.86465 1.61366 1.02496 1.42540 1.17129 1.21869 0.91930 0.95289 0.99539 1.19603 0.83478 0.89106 0.84003 1.90538 1.81143 1.19891 1.52251 1.42210 1.14732 1.12945 1.53183 1.19430 0.91299 0.96748 1.35793 0.86233 1.25036 0.95514 0.98061 0.97548 1.69622 1.05272 1.34841 1.42389 0.86677 0.78484 0.84655 0.79596 1.19699 1.20190 1.19503 1.22250 0.90479 0.94101 1.00989 1.21877 0.90547 1.00678 1.00757 0.91201 0.91400 0.91180 0.77431 0.76254 0.91350 0.92223 0.90401 0.91223 0.95822 0.87485 0.89147 0.93257 0.79756 0.91632 0.90176 0.94642 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.39 36.00 0.37 0.00 16 2 C -0.19 -1.38 6.14 -104.93 -0.64 -2.02 16 3 C -0.01 -0.07 12.00 29.63 0.36 0.29 16 4 O -0.16 -1.38 10.40 4.99 0.05 -1.33 16 5 C -0.07 -0.76 7.13 -36.80 -0.26 -1.02 16 6 C 0.60 7.24 7.75 -12.86 -0.10 7.14 16 7 O -0.51 -7.87 16.53 5.19 0.09 -7.79 16 8 N -0.71 -7.25 5.08 -55.04 -0.28 -7.53 16 9 C 0.15 1.76 2.61 -67.85 -0.18 1.58 16 10 H 0.10 1.50 7.58 -51.93 -0.39 1.10 16 11 C -0.13 -1.52 5.58 -26.61 -0.15 -1.67 16 12 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 13 C 0.05 0.75 5.11 -3.83 -0.02 0.73 16 14 N -0.51 -7.98 4.39 -236.11 -1.04 -9.01 16 15 C 0.05 0.74 5.45 -4.98 -0.03 0.71 16 16 C 0.45 10.09 7.46 -10.98 -0.08 10.01 16 17 O -0.56 -14.58 13.92 5.54 0.08 -14.51 16 18 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 19 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 23 Si 0.88 19.22 27.74 -169.99 -4.72 14.51 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 27 C 0.05 0.60 4.93 -3.83 -0.02 0.58 16 28 C -0.12 -1.10 10.57 -39.39 -0.42 -1.52 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.21 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.40 3.15 8.36 -40.82 -0.34 2.80 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 2.04 5.80 -51.93 -0.30 1.74 16 40 H 0.09 1.29 7.98 -51.93 -0.41 0.88 16 41 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 45 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -34.38 381.42 -7.66 -42.04 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.73 Total: 11.18 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.58 Total: 5.52 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.60 Total: -55.38 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.21 Total: -23.62 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.72 Total: 14.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.38 -7.66 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660837981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.222 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds