Wall clock time and date at job start Tue Mar 31 2020 19:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35132 * 126.44412 * 2 1 4 4 O 1.33935 * 108.76968 * 179.77316 * 3 2 1 5 5 C 1.34914 * 109.38422 * 0.37471 * 4 3 2 6 6 C 1.46655 * 125.99026 * 179.89165 * 5 4 3 7 7 O 1.21701 * 120.00249 * 179.68952 * 6 5 4 8 8 N 1.34775 * 119.99988 * 359.68802 * 6 5 4 9 9 C 1.46497 * 120.00063 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.53964 * 35.09939 * 9 8 6 11 11 C 1.53120 * 109.50232 * 274.99699 * 9 8 6 12 12 C 1.53114 * 109.16161 * 182.40502 * 11 9 8 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.46896 * 111.00472 * 185.84130 * 14 13 12 16 16 C 1.50701 * 109.47043 * 66.04154 * 15 14 13 17 17 O 1.21295 * 120.00270 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99953 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00055 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99794 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99742 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99525 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00250 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.47003 * 89.99818 * 23 21 19 25 25 H 1.48502 * 109.47064 * 209.99899 * 23 21 19 26 26 H 1.48502 * 109.46791 * 329.99396 * 23 21 19 27 27 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 28 28 C 1.36545 * 108.02352 * 359.62434 * 5 4 3 29 29 H 1.09001 * 109.47265 * 270.00225 * 1 2 3 30 30 H 1.08994 * 109.47217 * 30.00033 * 1 2 3 31 31 H 1.09001 * 109.47280 * 150.00553 * 1 2 3 32 32 H 1.07994 * 125.61536 * 0.02562 * 3 2 1 33 33 H 0.97003 * 119.99927 * 359.97438 * 8 6 5 34 34 H 1.08995 * 109.52336 * 62.50238 * 11 9 8 35 35 H 1.09001 * 109.57675 * 302.34588 * 11 9 8 36 36 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 37 37 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 38 38 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 39 39 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 40 40 H 1.08999 * 109.47799 * 186.04465 * 15 14 13 41 41 H 1.09003 * 109.47009 * 306.04671 * 15 14 13 42 42 H 0.97004 * 120.00345 * 0.02562 * 18 16 15 43 43 H 0.97003 * 119.99969 * 180.02562 * 22 21 19 44 44 H 1.08993 * 109.46639 * 178.24333 * 27 14 13 45 45 H 1.09010 * 109.45973 * 58.27499 * 27 14 13 46 46 H 1.08002 * 126.64598 * 180.18609 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0050 5 6 3.6261 -0.6681 0.0000 6 6 4.8379 -1.4941 0.0008 7 8 4.7471 -2.7077 0.0016 8 7 6.0521 -0.9092 0.0007 9 6 7.2626 -1.7343 0.0009 10 1 7.0905 -2.6342 -0.5895 11 6 7.6142 -2.1257 1.4389 12 6 8.9128 -2.9368 1.4358 13 6 10.0247 -2.1078 0.7889 14 7 9.6410 -1.7593 -0.5851 15 6 10.7417 -1.0821 -1.2835 16 6 11.8885 -2.0429 -1.4642 17 8 11.7977 -3.1801 -1.0523 18 7 13.0147 -1.6389 -2.0846 19 6 14.0579 -2.5131 -2.2496 20 1 13.9769 -3.5257 -1.8828 21 6 15.2191 -2.0964 -2.8887 22 7 16.2188 -2.9345 -3.0473 23 14 15.3593 -0.3448 -3.5226 24 1 15.9292 0.5220 -2.4600 25 1 16.2477 -0.3185 -4.7123 26 1 14.0125 0.1545 -3.8995 27 6 8.4224 -0.9402 -0.6045 28 6 2.3408 -1.1292 0.0001 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 1.9770 2.1145 0.0004 33 1 6.1245 0.0581 -0.0003 34 1 6.8093 -2.7285 1.8595 35 1 7.7479 -1.2263 2.0400 36 1 8.7667 -3.8557 0.8679 37 1 9.1912 -3.1821 2.4607 38 1 10.1799 -1.1957 1.3650 39 1 10.9474 -2.6879 0.7721 40 1 10.3970 -0.7400 -2.2593 41 1 11.0737 -0.2267 -0.6950 42 1 13.0873 -0.7295 -2.4145 43 1 17.0296 -2.6435 -3.4931 44 1 8.1812 -0.6722 -1.6330 45 1 8.5850 -0.0334 -0.0216 46 1 2.0267 -2.1625 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660837981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:29 Heat of formation + Delta-G solvation = -75.677861 kcal Electronic energy + Delta-G solvation = -28196.270531 eV Core-core repulsion = 24086.535159 eV Total energy + Delta-G solvation = -4109.735372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70162 -41.19769 -40.41448 -39.08919 -36.25564 -35.74723 -35.10806 -33.95173 -33.62689 -31.87657 -30.54861 -29.10665 -28.09294 -26.38950 -25.17010 -24.02862 -23.23559 -22.16087 -21.29188 -21.25494 -20.68091 -20.17242 -18.98462 -17.74876 -17.50984 -17.40910 -17.32881 -16.73587 -16.40323 -16.32032 -15.84021 -15.58172 -15.23551 -15.18546 -14.84795 -14.71098 -14.51314 -14.38282 -14.15427 -14.07533 -13.94517 -13.79263 -13.55684 -13.47339 -13.05275 -12.70510 -12.56274 -12.42040 -12.38875 -11.99819 -11.97015 -11.84514 -11.64420 -11.49776 -11.34259 -10.74668 -10.34967 -10.27739 -10.20497 -9.55488 -9.21264 -8.39335 -6.00012 -0.00546 1.31281 1.33254 1.36883 1.45841 1.57124 1.98821 2.03708 2.06030 2.24737 2.71581 3.17005 3.22655 3.58147 3.73745 3.81370 3.81701 4.01009 4.06212 4.08308 4.27022 4.28228 4.35758 4.39702 4.48262 4.57286 4.59403 4.65859 4.69526 4.86436 4.88315 4.93069 4.97758 5.01609 5.03372 5.08697 5.19437 5.25945 5.38195 5.50584 5.55379 5.81875 5.90783 6.03351 6.18526 6.38909 6.62181 6.91147 6.96706 7.42549 8.00668 8.78430 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.001968 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.556693 B =14227.122706 C =14901.110681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.209 4.209 3 C 0.009 3.991 4 O -0.164 6.164 5 C -0.101 4.101 6 C 0.603 3.397 7 O -0.560 6.560 8 N -0.698 5.698 9 C 0.153 3.847 10 H 0.070 0.930 11 C -0.119 4.119 12 C -0.106 4.106 13 C 0.053 3.947 14 N -0.539 5.539 15 C 0.058 3.942 16 C 0.450 3.550 17 O -0.605 6.605 18 N -0.592 5.592 19 C -0.326 4.326 20 H 0.054 0.946 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.229 1.229 27 C 0.058 3.942 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.254 0.746 33 H 0.418 0.582 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.390 0.610 43 H 0.278 0.722 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.655 18.857 7.146 36.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.210 4.210 3 C -0.060 4.060 4 O -0.059 6.059 5 C -0.153 4.153 6 C 0.390 3.610 7 O -0.441 6.441 8 N -0.349 5.349 9 C 0.048 3.952 10 H 0.089 0.911 11 C -0.157 4.157 12 C -0.144 4.144 13 C -0.075 4.075 14 N -0.264 5.264 15 C -0.073 4.073 16 C 0.238 3.762 17 O -0.489 6.489 18 N -0.234 5.234 19 C -0.456 4.456 20 H 0.072 0.928 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.153 1.153 27 C -0.070 4.070 28 C -0.147 4.147 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.270 0.730 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -30.378 16.929 7.102 35.494 hybrid contribution 0.950 0.884 -0.102 1.301 sum -29.428 17.813 7.000 35.104 Atomic orbital electron populations 1.20258 0.86737 1.03844 1.03122 1.20844 0.99136 0.91771 1.09235 1.25126 0.78688 1.01645 1.00553 1.84044 1.30672 1.20490 1.70713 1.21691 0.95488 0.81411 1.16682 1.16740 0.82045 0.86082 0.76094 1.90890 1.86574 1.14158 1.52450 1.45696 1.04280 1.11263 1.73620 1.20829 0.83102 0.94172 0.97076 0.91143 1.21886 0.97077 1.00757 0.96028 1.21439 0.93903 0.98356 1.00745 1.22188 0.99063 0.98977 0.87235 1.61233 1.03586 1.44436 1.17171 1.21798 0.89582 0.93922 1.02018 1.20918 0.84299 0.89514 0.81474 1.90534 1.82171 1.22724 1.53445 1.42022 1.14130 1.13148 1.54124 1.18989 0.93881 0.95381 1.37324 0.92823 1.26130 0.94093 1.04316 0.96967 1.69815 1.06247 1.38170 1.43484 0.85354 0.80462 0.76811 0.78812 1.18108 1.20235 1.15270 1.22253 0.88080 0.94225 1.02483 1.22100 0.91104 1.01353 1.00173 0.90520 0.89362 0.91534 0.73039 0.74441 0.92326 0.89899 0.93240 0.89942 0.93422 0.92021 0.85991 0.89705 0.77488 0.91234 0.88729 0.91471 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.39 71.23 0.74 0.21 16 2 C -0.21 -2.48 6.14 -20.06 -0.12 -2.61 16 3 C 0.01 0.08 12.00 67.10 0.81 0.89 16 4 O -0.16 -2.33 10.40 -5.07 -0.05 -2.38 16 5 C -0.10 -1.97 7.13 24.07 0.17 -1.80 16 6 C 0.60 14.36 7.75 86.44 0.67 15.03 16 7 O -0.56 -17.94 16.53 -4.35 -0.07 -18.01 16 8 N -0.70 -13.00 5.08 -446.27 -2.27 -15.27 16 9 C 0.15 3.47 2.61 45.05 0.12 3.59 16 10 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 11 C -0.12 -2.67 5.58 30.67 0.17 -2.50 16 12 C -0.11 -2.87 6.09 30.64 0.19 -2.68 16 13 C 0.05 1.60 5.11 86.32 0.44 2.04 16 14 N -0.54 -15.94 4.39 -900.93 -3.96 -19.90 16 15 C 0.06 1.71 5.45 85.56 0.47 2.17 16 16 C 0.45 20.14 7.46 87.66 0.65 20.79 16 17 O -0.60 -33.45 13.92 -3.08 -0.04 -33.50 16 18 N -0.59 -27.66 5.09 -306.98 -1.56 -29.22 16 19 C -0.33 -19.15 10.16 84.04 0.85 -18.30 16 20 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 21 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 22 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16 23 Si 0.97 38.51 27.74 68.60 1.90 40.41 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 25 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 27 C 0.06 1.17 4.93 86.33 0.43 1.59 16 28 C -0.13 -2.30 10.57 22.39 0.24 -2.06 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.25 -0.31 8.06 -2.91 -0.02 -0.34 16 33 H 0.42 5.23 8.36 -92.71 -0.77 4.45 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 2.45 5.80 -2.39 -0.01 2.44 16 40 H 0.12 2.91 7.98 -2.39 -0.02 2.89 16 41 H 0.09 1.98 8.12 -2.39 -0.02 1.97 16 42 H 0.39 14.89 5.76 -92.71 -0.53 14.35 16 43 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.09 1.69 8.01 -2.39 -0.02 1.67 16 45 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -84.51 381.42 0.19 -84.32 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.35 Total: 34.11 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.28 Total: 15.90 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -7.48 Total: -120.86 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.17 Total: -53.89 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -84.51 0.19 -84.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660837981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.643 kcal (2) G-P(sol) polarization free energy of solvation -84.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds