Wall clock time and date at job start Tue Mar 31 2020 19:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 126.44537 * 2 1 4 4 O 1.33930 * 108.77215 * 179.78900 * 3 2 1 5 5 C 1.34915 * 109.37981 * 0.38020 * 4 3 2 6 6 C 1.46659 * 125.98600 * 179.88356 * 5 4 3 7 7 O 1.21693 * 120.00286 * 179.41490 * 6 5 4 8 8 N 1.34778 * 119.99965 * 359.69165 * 6 5 4 9 9 C 1.46497 * 119.99939 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.50825 * 325.08155 * 9 8 6 11 11 C 1.53129 * 109.50261 * 85.19933 * 9 8 6 12 12 C 1.53115 * 109.16020 * 177.59541 * 11 9 8 13 13 C 1.53036 * 109.27815 * 302.34285 * 12 11 9 14 14 N 1.46852 * 109.52460 * 59.18244 * 13 12 11 15 15 C 1.46895 * 111.00356 * 174.15979 * 14 13 12 16 16 C 1.50693 * 109.47567 * 190.60030 * 15 14 13 17 17 O 1.21299 * 119.99887 * 6.26596 * 16 15 14 18 18 N 1.34769 * 120.00364 * 186.27020 * 16 15 14 19 19 C 1.37104 * 120.00061 * 180.02562 * 18 16 15 20 20 H 1.07992 * 119.99954 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99968 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99752 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47064 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47564 * 119.99859 * 23 21 19 26 26 H 1.48500 * 109.47059 * 240.00252 * 23 21 19 27 27 C 1.46850 * 111.19517 * 298.26009 * 14 13 12 28 28 C 1.36541 * 108.02787 * 359.62091 * 5 4 3 29 29 H 1.09005 * 109.46875 * 269.97150 * 1 2 3 30 30 H 1.08993 * 109.47242 * 29.97558 * 1 2 3 31 31 H 1.08999 * 109.47102 * 149.97672 * 1 2 3 32 32 H 1.08003 * 125.61040 * 0.06137 * 3 2 1 33 33 H 0.96996 * 119.99889 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.51700 * 297.49903 * 11 9 8 35 35 H 1.08995 * 109.51879 * 57.68736 * 11 9 8 36 36 H 1.09004 * 109.50435 * 182.40541 * 12 11 9 37 37 H 1.09001 * 109.53840 * 62.30426 * 12 11 9 38 38 H 1.09001 * 109.46768 * 299.16409 * 13 12 11 39 39 H 1.09005 * 109.46517 * 179.19546 * 13 12 11 40 40 H 1.09007 * 109.47153 * 310.60261 * 15 14 13 41 41 H 1.09008 * 109.47275 * 70.59442 * 15 14 13 42 42 H 0.97005 * 120.00223 * 359.97438 * 18 16 15 43 43 H 0.97007 * 119.99629 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.45962 * 301.72135 * 27 14 13 45 45 H 1.08999 * 109.45208 * 181.75620 * 27 14 13 46 46 H 1.08005 * 126.64834 * 180.22607 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0047 5 6 3.6260 -0.6681 -0.0007 6 6 4.8379 -1.4941 -0.0005 7 8 4.7472 -2.7076 0.0050 8 7 6.0521 -0.9092 -0.0008 9 6 7.2626 -1.7343 -0.0001 10 1 7.0888 -2.6349 0.5887 11 6 7.6172 -2.1231 -1.4381 12 6 8.9158 -2.9342 -1.4337 13 6 10.0264 -2.1064 -0.7830 14 7 9.6398 -1.7604 0.5908 15 6 10.7390 -1.0844 1.2927 16 6 10.4090 -0.9786 2.7592 17 8 9.4168 -1.5211 3.1982 18 7 11.2160 -0.2813 3.5830 19 6 10.9160 -0.1855 4.9174 20 1 10.0327 -0.6685 5.3082 21 6 11.7484 0.5331 5.7668 22 7 12.8229 1.1213 5.2911 23 14 11.3400 0.6630 7.5849 24 1 10.0862 -0.0819 7.8651 25 1 12.4495 0.0839 8.3842 26 1 11.1592 2.0908 7.9508 27 6 8.4211 -0.9413 0.6091 28 6 2.3408 -1.1292 -0.0004 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9770 2.1145 0.0009 33 1 6.1244 0.0581 -0.0016 34 1 6.8130 -2.7252 -1.8613 35 1 7.7524 -1.2220 -2.0362 36 1 9.1963 -3.1777 -2.4585 37 1 8.7690 -3.8545 -0.8682 38 1 10.1827 -1.1932 -1.3572 39 1 10.9490 -2.6866 -0.7654 40 1 11.6574 -1.6581 1.1674 41 1 10.8752 -0.0856 0.8779 42 1 12.0096 0.1523 3.2320 43 1 13.4042 1.6226 5.8842 44 1 8.5849 -0.0336 0.0283 45 1 8.1779 -0.6752 1.6378 46 1 2.0266 -2.1625 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660837982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:33 Heat of formation + Delta-G solvation = -56.347620 kcal Electronic energy + Delta-G solvation = -28567.275673 eV Core-core repulsion = 24458.378523 eV Total energy + Delta-G solvation = -4108.897150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.93498 -40.01061 -38.81480 -37.52059 -34.97001 -34.38264 -33.90158 -32.58674 -31.21214 -30.98221 -29.54143 -27.57365 -27.41160 -24.70964 -24.17002 -22.93977 -22.05823 -21.35569 -20.24352 -19.71365 -19.14974 -18.13263 -17.85952 -16.60000 -16.56804 -16.35377 -15.96490 -15.27599 -14.93392 -14.78482 -14.58890 -14.24204 -14.00242 -13.89556 -13.83129 -13.50918 -13.41373 -13.32255 -13.16978 -13.07607 -12.88185 -12.50286 -12.03776 -11.96368 -11.54705 -11.48892 -11.32117 -11.08904 -10.88815 -10.68034 -10.57863 -10.34105 -10.26451 -10.21394 -9.97259 -9.49188 -9.19337 -8.80220 -8.44957 -7.97989 -7.89226 -6.41866 -3.82404 0.86658 2.04649 2.46652 3.01882 3.07820 3.16273 3.27026 3.34503 3.90606 3.99712 4.24440 4.42226 4.48362 4.65707 4.82113 4.91460 4.95772 5.05686 5.06558 5.23364 5.26535 5.27966 5.35391 5.39096 5.49363 5.60286 5.61974 5.64030 5.69252 5.69678 5.79122 5.83500 5.97414 6.07209 6.10957 6.12448 6.22033 6.27083 6.36988 6.40871 6.61566 7.21269 7.34811 7.38119 7.55654 7.99225 8.06892 8.61966 9.18601 9.54694 10.06570 10.75956 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.002703 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.868222 B =10357.252346 C =12434.402321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.195 4.195 3 C -0.011 4.011 4 O -0.162 6.162 5 C -0.072 4.072 6 C 0.605 3.395 7 O -0.518 6.518 8 N -0.711 5.711 9 C 0.150 3.850 10 H 0.104 0.896 11 C -0.130 4.130 12 C -0.112 4.112 13 C 0.052 3.948 14 N -0.511 5.511 15 C 0.048 3.952 16 C 0.441 3.559 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.051 3.949 28 C -0.120 4.120 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.209 0.791 33 H 0.404 0.596 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.028 0.972 45 H 0.104 0.896 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.726 1.054 -16.422 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.197 4.197 3 C -0.080 4.080 4 O -0.057 6.057 5 C -0.124 4.124 6 C 0.390 3.610 7 O -0.395 6.395 8 N -0.360 5.360 9 C 0.046 3.954 10 H 0.122 0.878 11 C -0.168 4.168 12 C -0.150 4.150 13 C -0.076 4.076 14 N -0.235 5.235 15 C -0.083 4.083 16 C 0.227 3.773 17 O -0.458 6.458 18 N -0.202 5.202 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.077 4.077 28 C -0.141 4.141 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.225 0.775 33 H 0.238 0.762 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.122 0.878 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.114 -0.341 -15.758 22.541 hybrid contribution 0.516 1.717 0.305 1.819 sum -15.598 1.377 -15.453 22.000 Atomic orbital electron populations 1.20179 0.88609 1.02798 1.02413 1.20499 0.97740 0.92427 1.09014 1.24201 0.79944 1.00055 1.03830 1.84069 1.29353 1.21722 1.70524 1.22123 0.96237 0.80530 1.13496 1.16501 0.81204 0.86390 0.76882 1.90889 1.85893 1.12180 1.50570 1.45887 1.05363 1.10801 1.73995 1.21035 0.82615 0.95187 0.96568 0.87844 1.21986 0.98199 1.00218 0.96432 1.21515 0.93847 0.99339 1.00303 1.22181 0.98502 0.98509 0.88401 1.61335 1.03283 1.44607 1.14310 1.21856 0.94334 0.97617 0.94512 1.19765 0.86214 0.84230 0.87121 1.90526 1.28557 1.49859 1.76886 1.41889 1.24081 1.45989 1.08259 1.19744 1.09694 1.30340 0.82852 0.87876 1.25258 0.95514 0.96649 1.00587 1.69624 1.13920 1.34346 1.36494 0.85812 0.78632 0.77925 0.82067 1.19206 1.20742 1.20809 1.22327 0.89424 0.92957 1.03026 1.21847 0.90534 1.00603 1.01070 0.91192 0.91476 0.91284 0.77471 0.76199 0.91351 0.92182 0.91251 0.90548 0.95115 0.90433 0.88968 0.93490 0.77525 0.91960 0.95386 0.87800 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.39 36.00 0.37 -0.13 16 2 C -0.20 -1.76 6.14 -104.93 -0.64 -2.40 16 3 C -0.01 -0.09 12.00 29.63 0.36 0.27 16 4 O -0.16 -1.77 10.40 4.99 0.05 -1.72 16 5 C -0.07 -0.90 7.13 -36.80 -0.26 -1.17 16 6 C 0.60 8.79 7.75 -12.86 -0.10 8.69 16 7 O -0.52 -9.02 16.52 5.20 0.09 -8.93 16 8 N -0.71 -9.41 5.08 -55.04 -0.28 -9.69 16 9 C 0.15 2.18 2.62 -67.85 -0.18 2.00 16 10 H 0.10 1.82 7.57 -51.93 -0.39 1.42 16 11 C -0.13 -1.57 5.58 -26.61 -0.15 -1.72 16 12 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 13 C 0.05 0.65 5.46 -3.83 -0.02 0.63 16 14 N -0.51 -8.37 4.35 -236.11 -1.03 -9.39 16 15 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 16 C 0.44 10.29 7.31 -10.99 -0.08 10.21 16 17 O -0.57 -15.42 14.29 5.54 0.08 -15.34 16 18 N -0.57 -14.18 5.29 -10.97 -0.06 -14.24 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 C 0.05 0.81 4.59 -3.83 -0.02 0.79 16 28 C -0.12 -1.36 10.57 -39.39 -0.42 -1.77 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.40 4.56 8.36 -40.82 -0.34 4.22 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 40 H 0.09 1.45 7.98 -51.93 -0.41 1.04 16 41 H 0.05 0.74 8.12 -51.92 -0.42 0.32 16 42 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 2.03 6.06 -51.93 -0.31 1.72 16 46 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -33.45 384.96 -8.00 -41.45 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.78 Total: 12.88 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.57 Total: 6.87 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.64 Total: -57.07 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: 0.22 Total: -26.00 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.45 -8.00 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660837982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.901 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds