Wall clock time and date at job start Tue Mar 31 2020 19:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 126.44537 * 2 1 4 4 O 1.33930 * 108.77215 * 179.78900 * 3 2 1 5 5 C 1.34915 * 109.37981 * 0.38020 * 4 3 2 6 6 C 1.46659 * 125.98600 * 179.88356 * 5 4 3 7 7 O 1.21693 * 120.00286 * 179.41490 * 6 5 4 8 8 N 1.34778 * 119.99965 * 359.69165 * 6 5 4 9 9 C 1.46497 * 119.99939 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.50825 * 325.08155 * 9 8 6 11 11 C 1.53129 * 109.50261 * 85.19933 * 9 8 6 12 12 C 1.53115 * 109.16020 * 177.59541 * 11 9 8 13 13 C 1.53036 * 109.27815 * 302.34285 * 12 11 9 14 14 N 1.46852 * 109.52460 * 59.18244 * 13 12 11 15 15 C 1.46895 * 111.00356 * 174.15979 * 14 13 12 16 16 C 1.50693 * 109.47567 * 190.60030 * 15 14 13 17 17 O 1.21299 * 119.99887 * 6.26596 * 16 15 14 18 18 N 1.34769 * 120.00364 * 186.27020 * 16 15 14 19 19 C 1.37104 * 120.00061 * 180.02562 * 18 16 15 20 20 H 1.07992 * 119.99954 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99968 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99752 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47064 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47564 * 119.99859 * 23 21 19 26 26 H 1.48500 * 109.47059 * 240.00252 * 23 21 19 27 27 C 1.46850 * 111.19517 * 298.26009 * 14 13 12 28 28 C 1.36541 * 108.02787 * 359.62091 * 5 4 3 29 29 H 1.09005 * 109.46875 * 269.97150 * 1 2 3 30 30 H 1.08993 * 109.47242 * 29.97558 * 1 2 3 31 31 H 1.08999 * 109.47102 * 149.97672 * 1 2 3 32 32 H 1.08003 * 125.61040 * 0.06137 * 3 2 1 33 33 H 0.96996 * 119.99889 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.51700 * 297.49903 * 11 9 8 35 35 H 1.08995 * 109.51879 * 57.68736 * 11 9 8 36 36 H 1.09004 * 109.50435 * 182.40541 * 12 11 9 37 37 H 1.09001 * 109.53840 * 62.30426 * 12 11 9 38 38 H 1.09001 * 109.46768 * 299.16409 * 13 12 11 39 39 H 1.09005 * 109.46517 * 179.19546 * 13 12 11 40 40 H 1.09007 * 109.47153 * 310.60261 * 15 14 13 41 41 H 1.09008 * 109.47275 * 70.59442 * 15 14 13 42 42 H 0.97005 * 120.00223 * 359.97438 * 18 16 15 43 43 H 0.97007 * 119.99629 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.45962 * 301.72135 * 27 14 13 45 45 H 1.08999 * 109.45208 * 181.75620 * 27 14 13 46 46 H 1.08005 * 126.64834 * 180.22607 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0047 5 6 3.6260 -0.6681 -0.0007 6 6 4.8379 -1.4941 -0.0005 7 8 4.7472 -2.7076 0.0050 8 7 6.0521 -0.9092 -0.0008 9 6 7.2626 -1.7343 -0.0001 10 1 7.0888 -2.6349 0.5887 11 6 7.6172 -2.1231 -1.4381 12 6 8.9158 -2.9342 -1.4337 13 6 10.0264 -2.1064 -0.7830 14 7 9.6398 -1.7604 0.5908 15 6 10.7390 -1.0844 1.2927 16 6 10.4090 -0.9786 2.7592 17 8 9.4168 -1.5211 3.1982 18 7 11.2160 -0.2813 3.5830 19 6 10.9160 -0.1855 4.9174 20 1 10.0327 -0.6685 5.3082 21 6 11.7484 0.5331 5.7668 22 7 12.8229 1.1213 5.2911 23 14 11.3400 0.6630 7.5849 24 1 10.0862 -0.0819 7.8651 25 1 12.4495 0.0839 8.3842 26 1 11.1592 2.0908 7.9508 27 6 8.4211 -0.9413 0.6091 28 6 2.3408 -1.1292 -0.0004 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 1.9770 2.1145 0.0009 33 1 6.1244 0.0581 -0.0016 34 1 6.8130 -2.7252 -1.8613 35 1 7.7524 -1.2220 -2.0362 36 1 9.1963 -3.1777 -2.4585 37 1 8.7690 -3.8545 -0.8682 38 1 10.1827 -1.1932 -1.3572 39 1 10.9490 -2.6866 -0.7654 40 1 11.6574 -1.6581 1.1674 41 1 10.8752 -0.0856 0.8779 42 1 12.0096 0.1523 3.2320 43 1 13.4042 1.6226 5.8842 44 1 8.5849 -0.0336 0.0283 45 1 8.1779 -0.6752 1.6378 46 1 2.0266 -2.1625 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660837982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:32 Heat of formation + Delta-G solvation = -81.648008 kcal Electronic energy + Delta-G solvation = -28568.372780 eV Core-core repulsion = 24458.378523 eV Total energy + Delta-G solvation = -4109.994257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.74227 -41.20459 -40.31238 -39.04606 -36.20771 -35.82882 -35.14822 -33.78826 -33.22134 -31.89994 -30.56135 -28.98747 -28.12152 -26.52201 -25.17135 -24.23731 -23.11548 -22.20092 -21.32035 -21.04615 -20.63392 -19.86464 -19.03095 -17.75275 -17.53733 -17.45385 -17.39719 -16.56513 -16.46912 -16.22094 -15.87951 -15.73438 -15.43911 -15.22070 -14.81938 -14.65574 -14.45640 -14.33284 -14.11455 -13.96507 -13.80800 -13.58223 -13.53057 -13.27746 -13.05834 -12.75332 -12.58099 -12.42094 -12.40798 -12.13395 -11.99201 -11.81640 -11.71438 -11.45815 -11.37544 -10.77841 -10.37687 -10.22309 -9.99068 -9.59094 -9.21415 -8.46818 -5.94838 -0.04209 1.29973 1.35318 1.40650 1.54449 1.56579 2.00569 2.05763 2.06486 2.28543 2.81527 3.20301 3.38883 3.54776 3.76330 3.79108 3.80529 4.01145 4.03521 4.13427 4.22397 4.31293 4.33916 4.43917 4.55542 4.60699 4.63053 4.66157 4.71323 4.86668 4.87622 4.91393 4.97126 5.01189 5.03944 5.06573 5.16712 5.21675 5.38830 5.41411 5.48659 5.79092 5.87687 6.06257 6.21820 6.33139 6.61663 6.90493 7.14063 7.57734 8.14383 8.70772 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.002703 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.868222 B =10357.252346 C =12434.402321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.006 3.994 4 O -0.169 6.169 5 C -0.104 4.104 6 C 0.602 3.398 7 O -0.559 6.559 8 N -0.704 5.704 9 C 0.156 3.844 10 H 0.062 0.938 11 C -0.120 4.120 12 C -0.108 4.108 13 C 0.053 3.947 14 N -0.536 5.536 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.329 4.329 20 H 0.075 0.925 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.060 3.940 28 C -0.123 4.123 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.253 0.747 33 H 0.413 0.587 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.946 2.840 -18.017 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.063 4.063 4 O -0.064 6.064 5 C -0.156 4.156 6 C 0.389 3.611 7 O -0.440 6.440 8 N -0.354 5.354 9 C 0.052 3.948 10 H 0.081 0.919 11 C -0.159 4.159 12 C -0.146 4.146 13 C -0.074 4.074 14 N -0.261 5.261 15 C -0.070 4.070 16 C 0.226 3.774 17 O -0.502 6.502 18 N -0.212 5.212 19 C -0.459 4.459 20 H 0.093 0.907 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.201 1.201 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.069 4.069 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.269 0.731 33 H 0.250 0.750 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.305 1.474 -17.382 23.878 hybrid contribution 0.484 1.185 0.784 1.501 sum -15.821 2.659 -16.598 23.084 Atomic orbital electron populations 1.20262 0.86361 1.04040 1.03121 1.20872 0.99290 0.91564 1.09083 1.25158 0.78663 1.01787 1.00677 1.84055 1.30925 1.20691 1.70744 1.21737 0.95638 0.81386 1.16857 1.16772 0.81978 0.86218 0.76086 1.90849 1.86582 1.13891 1.52669 1.45814 1.04868 1.11203 1.73488 1.20855 0.82622 0.93598 0.97756 0.91928 1.21918 0.98439 1.01101 0.94413 1.21534 0.93098 0.98179 1.01785 1.22304 0.99264 0.99706 0.86146 1.61273 1.03014 1.44806 1.17023 1.21730 0.95452 0.99681 0.90114 1.20870 0.84826 0.82208 0.89477 1.90507 1.30206 1.51083 1.78401 1.41941 1.24677 1.46828 1.07785 1.19636 1.09732 1.31865 0.84661 0.90679 1.25989 0.95156 0.95775 1.04304 1.69675 1.14215 1.34283 1.37910 0.84915 0.78175 0.78290 0.77230 1.20102 1.19578 1.19491 1.22128 0.89900 0.94101 1.00762 1.22108 0.90775 1.01491 0.99989 0.90671 0.89202 0.91154 0.73079 0.75036 0.92044 0.90041 0.87970 0.92384 0.92906 0.89004 0.86607 0.91018 0.76958 0.91329 0.92971 0.92307 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 71.23 0.74 -0.05 16 2 C -0.21 -3.39 6.14 -20.06 -0.12 -3.52 16 3 C 0.01 0.09 12.00 67.10 0.81 0.90 16 4 O -0.17 -3.57 10.40 -5.05 -0.05 -3.62 16 5 C -0.10 -2.71 7.13 24.07 0.17 -2.54 16 6 C 0.60 18.57 7.75 86.44 0.67 19.24 16 7 O -0.56 -20.97 16.52 -4.32 -0.07 -21.05 16 8 N -0.70 -19.44 5.08 -446.27 -2.27 -21.70 16 9 C 0.16 4.70 2.62 45.05 0.12 4.82 16 10 H 0.06 2.40 7.57 -2.39 -0.02 2.38 16 11 C -0.12 -2.80 5.58 30.68 0.17 -2.63 16 12 C -0.11 -2.27 6.09 30.64 0.19 -2.08 16 13 C 0.05 1.18 5.46 86.32 0.47 1.65 16 14 N -0.54 -17.18 4.35 -900.92 -3.92 -21.09 16 15 C 0.06 2.07 5.45 85.56 0.47 2.54 16 16 C 0.44 20.95 7.31 87.66 0.64 21.59 16 17 O -0.62 -34.72 14.29 -3.09 -0.04 -34.77 16 18 N -0.57 -29.48 5.29 -306.99 -1.62 -31.10 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.58 13.05 21.67 0.28 -49.30 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 27 C 0.06 1.91 4.59 86.32 0.40 2.31 16 28 C -0.12 -2.82 10.57 22.39 0.24 -2.58 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.25 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.41 9.53 8.36 -92.71 -0.78 8.76 16 34 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.82 8.01 -2.38 -0.02 1.80 16 40 H 0.12 3.39 7.98 -2.38 -0.02 3.37 16 41 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 42 H 0.40 19.17 7.90 -92.70 -0.73 18.44 16 43 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 2.43 6.06 -2.39 -0.01 2.41 16 46 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -77.05 384.96 0.08 -76.97 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.49 Total: 38.82 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 6.23 Total: 21.39 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -7.52 Total: -123.20 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -0.17 Total: -59.43 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -77.05 0.08 -76.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660837982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.682 kcal (2) G-P(sol) polarization free energy of solvation -77.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds