Wall clock time and date at job start Tue Mar 31 2020 19:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40364 * 126.64791 * 2 1 4 4 C 1.35130 * 107.11473 * 179.97438 * 3 2 1 5 5 O 1.33922 * 108.76985 * 359.76901 * 4 3 2 6 6 C 1.34920 * 109.38667 * 0.37858 * 5 4 3 7 7 C 1.46652 * 125.98795 * 179.88548 * 6 5 4 8 8 O 1.21700 * 119.99691 * 179.69531 * 7 6 5 9 9 N 1.34777 * 120.00136 * 359.69002 * 7 6 5 10 10 C 1.47417 * 125.64751 * 355.25045 * 9 7 6 11 11 C 1.54915 * 104.83038 * 155.91396 * 10 9 7 12 12 C 1.55160 * 101.58108 * 37.01021 * 11 10 9 13 13 C 1.47022 * 125.64644 * 175.29759 * 9 7 6 14 14 H 1.08999 * 109.88892 * 300.43713 * 13 9 7 15 15 C 1.53004 * 109.88289 * 61.60207 * 13 9 7 16 16 N 1.46898 * 109.47452 * 183.16658 * 15 13 9 17 17 C 1.46895 * 110.99947 * 185.03114 * 16 15 13 18 18 C 1.50700 * 109.46937 * 179.97438 * 17 16 15 19 19 O 1.21298 * 120.00094 * 0.02562 * 18 17 16 20 20 N 1.34786 * 120.00141 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99985 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00022 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99673 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00051 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99866 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47194 * 59.99553 * 25 23 21 27 27 H 1.48496 * 109.47151 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47089 * 300.00149 * 25 23 21 29 29 H 1.09002 * 109.46958 * 270.04019 * 1 2 3 30 30 H 1.08992 * 109.47205 * 30.04498 * 1 2 3 31 31 H 1.09002 * 109.46736 * 150.04626 * 1 2 3 32 32 H 1.07998 * 126.43599 * 359.96164 * 3 2 1 33 33 H 1.08005 * 125.61277 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.36892 * 37.07862 * 10 9 7 35 35 H 1.08999 * 110.46083 * 274.79904 * 10 9 7 36 36 H 1.08994 * 111.00423 * 278.93114 * 11 10 9 37 37 H 1.08997 * 111.03731 * 155.09508 * 11 10 9 38 38 H 1.08995 * 110.72028 * 82.86127 * 12 11 10 39 39 H 1.09001 * 110.71512 * 206.13371 * 12 11 10 40 40 H 1.09005 * 109.47140 * 303.16669 * 15 13 9 41 41 H 1.08996 * 109.47245 * 63.16297 * 15 13 9 42 42 H 1.00896 * 111.00243 * 61.07647 * 16 15 13 43 43 H 1.08994 * 109.47576 * 299.99928 * 17 16 15 44 44 H 1.09002 * 109.47072 * 60.00396 * 17 16 15 45 45 H 0.96997 * 119.99424 * 0.02562 * 20 18 17 46 46 H 0.97001 * 119.99917 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0006 5 8 3.6005 -0.6647 0.0060 6 6 2.3220 -1.0956 0.0006 7 6 1.8843 -2.4953 0.0016 8 8 0.6968 -2.7615 0.0019 9 7 2.7972 -3.4868 0.0021 10 6 4.2574 -3.3104 -0.0975 11 6 4.8558 -4.5833 0.5516 12 6 3.8515 -5.6712 0.0874 13 6 2.5016 -4.9236 0.1010 14 1 1.9728 -5.1302 1.0315 15 6 1.6513 -5.3633 -1.0926 16 7 1.2978 -6.7816 -0.9461 17 6 0.5819 -7.2709 -2.1318 18 6 0.2372 -8.7260 -1.9455 19 8 0.5561 -9.2990 -0.9250 20 7 -0.4255 -9.3909 -2.9127 21 6 -0.7395 -10.7145 -2.7430 22 1 -0.4556 -11.2247 -1.8344 23 6 -1.4222 -11.4000 -3.7404 24 7 -1.7673 -10.7793 -4.8461 25 14 -1.8495 -13.2037 -3.5094 26 1 -2.7137 -13.3583 -2.3118 27 1 -2.5716 -13.6989 -4.7088 28 1 -0.6022 -13.9881 -3.3243 29 1 -0.3633 0.0007 1.0277 30 1 -0.3633 0.8895 -0.5145 31 1 -0.3633 -0.8904 -0.5131 32 1 2.0306 2.1594 -0.0006 33 1 4.5047 1.2916 0.0011 34 1 4.5704 -2.4220 0.4510 35 1 4.5621 -3.2378 -1.1415 36 1 4.8666 -4.4996 1.6383 37 1 5.8557 -4.7853 0.1675 38 1 4.0923 -6.0142 -0.9187 39 1 3.8370 -6.5064 0.7876 40 1 0.7415 -4.7642 -1.1310 41 1 2.2176 -5.2233 -2.0133 42 1 0.7568 -6.9348 -0.1083 43 1 -0.3334 -6.6948 -2.2671 44 1 1.2158 -7.1578 -3.0113 45 1 -0.6802 -8.9327 -3.7289 46 1 -2.2436 -11.2580 -5.5425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666397165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:57 Heat of formation + Delta-G solvation = -49.772557 kcal Electronic energy + Delta-G solvation = -28474.358212 eV Core-core repulsion = 24365.746178 eV Total energy + Delta-G solvation = -4108.612034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.05254 -40.24328 -38.24929 -37.73514 -35.23088 -34.42148 -33.78392 -32.05955 -31.20833 -30.77127 -30.01927 -27.85885 -26.77868 -24.92281 -24.07139 -22.82185 -22.19589 -21.79848 -20.53742 -19.59760 -19.10933 -17.92005 -17.67370 -17.01532 -16.65690 -16.36914 -15.94260 -15.40708 -15.18780 -14.55347 -14.47798 -14.32046 -14.11998 -13.81430 -13.57410 -13.52410 -13.37750 -13.35751 -13.21477 -12.93720 -12.72360 -12.36801 -12.19982 -12.08163 -11.67760 -11.54498 -11.45875 -11.31262 -11.03405 -10.85497 -10.83037 -10.41464 -10.27102 -10.17664 -10.04924 -9.46108 -9.12303 -8.77317 -8.38810 -7.99005 -7.91278 -6.37689 -3.78476 0.75131 1.99199 2.29836 2.78586 2.92548 3.23032 3.28265 3.32909 3.95882 4.10307 4.18105 4.33243 4.43343 4.45033 4.50412 4.67711 4.77899 4.98858 5.13814 5.13950 5.19714 5.20796 5.25923 5.29258 5.41759 5.47091 5.50255 5.60383 5.66001 5.71533 5.81679 5.84258 5.85046 5.88973 5.97591 6.05306 6.11682 6.18876 6.24323 6.32989 6.54782 7.17470 7.26912 7.58666 7.69954 7.82988 8.10222 8.65670 9.21677 9.58748 10.10372 10.80071 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.002072 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.889566 B =13507.780112 C =14396.699862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.087 4.087 3 C -0.224 4.224 4 C -0.010 4.010 5 O -0.161 6.161 6 C -0.080 4.080 7 C 0.615 3.385 8 O -0.513 6.513 9 N -0.606 5.606 10 C 0.098 3.902 11 C -0.137 4.137 12 C -0.112 4.112 13 C 0.143 3.857 14 H 0.079 0.921 15 C 0.048 3.952 16 N -0.664 5.664 17 C 0.053 3.947 18 C 0.443 3.557 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.209 0.791 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.350 0.650 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.145 25.486 8.063 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.243 4.243 4 C -0.080 4.080 5 O -0.056 6.056 6 C -0.131 4.131 7 C 0.403 3.597 8 O -0.391 6.391 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.175 4.175 12 C -0.150 4.150 13 C 0.040 3.960 14 H 0.098 0.902 15 C -0.083 4.083 16 N -0.296 5.296 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.173 0.827 33 H 0.226 0.774 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.169 0.831 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.409 24.479 8.360 29.136 hybrid contribution -1.208 0.223 -0.480 1.319 sum 12.202 24.703 7.880 28.656 Atomic orbital electron populations 1.20443 0.88126 1.03739 1.02969 1.20668 0.97745 0.90955 0.99636 1.21749 0.92461 1.00148 1.09951 1.24391 0.99942 0.80985 1.02661 1.84171 1.28284 1.22352 1.70822 1.21812 0.81473 0.94554 1.15297 1.16182 0.84919 0.81276 0.77281 1.90874 1.15232 1.81971 1.50974 1.48410 1.07243 1.06408 1.71882 1.22486 0.79220 0.99443 1.01324 1.22848 0.99421 0.94210 1.01003 1.22595 0.91565 0.97182 1.03670 1.21575 0.97377 0.78013 0.99010 0.90247 1.22282 0.99061 0.89336 0.97602 1.59995 1.49482 1.15035 1.05137 1.21642 0.97056 0.95200 0.94115 1.19803 0.83825 0.87980 0.85596 1.90515 1.57660 1.69337 1.29237 1.41859 1.49865 1.10979 1.17403 1.19654 1.33488 0.85666 1.04042 0.87973 1.25267 0.97182 1.00467 0.95109 1.69609 1.40166 1.37581 1.07029 0.85910 0.78724 0.81986 0.77540 1.19927 1.21017 1.19905 0.90749 0.91441 0.89368 0.82723 0.77428 0.89741 0.91075 0.90663 0.89630 0.89751 0.89237 0.93653 0.91148 0.83137 0.93820 0.89708 0.77455 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.82 36.01 0.35 -0.57 16 2 C -0.09 -0.90 6.20 -104.43 -0.65 -1.54 16 3 C -0.22 -1.67 10.83 -39.89 -0.43 -2.10 16 4 C -0.01 -0.06 12.08 29.63 0.36 0.29 16 5 O -0.16 -1.45 7.77 5.00 0.04 -1.41 16 6 C -0.08 -0.90 6.94 -36.80 -0.26 -1.16 16 7 C 0.61 8.13 7.64 -12.86 -0.10 8.03 16 8 O -0.51 -8.11 13.55 5.19 0.07 -8.04 16 9 N -0.61 -7.02 3.06 -164.56 -0.50 -7.52 16 10 C 0.10 0.84 6.33 -2.53 -0.02 0.83 16 11 C -0.14 -1.05 7.09 -24.58 -0.17 -1.23 16 12 C -0.11 -1.16 6.24 -24.90 -0.16 -1.32 16 13 C 0.14 1.76 3.13 -66.95 -0.21 1.55 16 14 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 15 C 0.05 0.68 5.05 -3.82 -0.02 0.66 16 16 N -0.66 -11.24 5.85 -115.06 -0.67 -11.91 16 17 C 0.05 0.98 6.16 -4.98 -0.03 0.95 16 18 C 0.44 10.75 7.82 -10.98 -0.09 10.67 16 19 O -0.58 -16.10 15.78 5.54 0.09 -16.01 16 20 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 21 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -25.02 13.05 55.50 0.72 -24.29 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.03 6.44 -51.93 -0.33 0.69 16 32 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.21 0.40 8.06 -52.48 -0.42 -0.02 16 34 H 0.08 0.67 5.94 -51.93 -0.31 0.36 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.93 7.80 -51.93 -0.40 0.53 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.72 6.60 -51.93 -0.34 0.38 16 41 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 42 H 0.35 6.20 8.49 -39.29 -0.33 5.86 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 46 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -33.80 381.81 -7.86 -41.66 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.63 Total: 13.26 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -1.65 Total: 6.90 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.51 Total: -58.48 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.20 Total: -25.47 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.80 -7.86 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666397165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.110 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds