Wall clock time and date at job start Tue Mar 31 2020 19:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40364 * 126.64791 * 2 1 4 4 C 1.35130 * 107.11473 * 179.97438 * 3 2 1 5 5 O 1.33922 * 108.76985 * 359.76901 * 4 3 2 6 6 C 1.34920 * 109.38667 * 0.37858 * 5 4 3 7 7 C 1.46652 * 125.98795 * 179.88548 * 6 5 4 8 8 O 1.21700 * 119.99691 * 179.69531 * 7 6 5 9 9 N 1.34777 * 120.00136 * 359.69002 * 7 6 5 10 10 C 1.47417 * 125.64751 * 355.25045 * 9 7 6 11 11 C 1.54915 * 104.83038 * 155.91396 * 10 9 7 12 12 C 1.55160 * 101.58108 * 37.01021 * 11 10 9 13 13 C 1.47022 * 125.64644 * 175.29759 * 9 7 6 14 14 H 1.08999 * 109.88892 * 300.43713 * 13 9 7 15 15 C 1.53004 * 109.88289 * 61.60207 * 13 9 7 16 16 N 1.46898 * 109.47452 * 183.16658 * 15 13 9 17 17 C 1.46895 * 110.99947 * 185.03114 * 16 15 13 18 18 C 1.50700 * 109.46937 * 179.97438 * 17 16 15 19 19 O 1.21298 * 120.00094 * 0.02562 * 18 17 16 20 20 N 1.34786 * 120.00141 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99985 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00022 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99673 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00051 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99866 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47194 * 59.99553 * 25 23 21 27 27 H 1.48496 * 109.47151 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47089 * 300.00149 * 25 23 21 29 29 H 1.09002 * 109.46958 * 270.04019 * 1 2 3 30 30 H 1.08992 * 109.47205 * 30.04498 * 1 2 3 31 31 H 1.09002 * 109.46736 * 150.04626 * 1 2 3 32 32 H 1.07998 * 126.43599 * 359.96164 * 3 2 1 33 33 H 1.08005 * 125.61277 * 180.02562 * 4 3 2 34 34 H 1.08996 * 110.36892 * 37.07862 * 10 9 7 35 35 H 1.08999 * 110.46083 * 274.79904 * 10 9 7 36 36 H 1.08994 * 111.00423 * 278.93114 * 11 10 9 37 37 H 1.08997 * 111.03731 * 155.09508 * 11 10 9 38 38 H 1.08995 * 110.72028 * 82.86127 * 12 11 10 39 39 H 1.09001 * 110.71512 * 206.13371 * 12 11 10 40 40 H 1.09005 * 109.47140 * 303.16669 * 15 13 9 41 41 H 1.08996 * 109.47245 * 63.16297 * 15 13 9 42 42 H 1.00896 * 111.00243 * 61.07647 * 16 15 13 43 43 H 1.08994 * 109.47576 * 299.99928 * 17 16 15 44 44 H 1.09002 * 109.47072 * 60.00396 * 17 16 15 45 45 H 0.96997 * 119.99424 * 0.02562 * 20 18 17 46 46 H 0.97001 * 119.99917 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 0.0006 5 8 3.6005 -0.6647 0.0060 6 6 2.3220 -1.0956 0.0006 7 6 1.8843 -2.4953 0.0016 8 8 0.6968 -2.7615 0.0019 9 7 2.7972 -3.4868 0.0021 10 6 4.2574 -3.3104 -0.0975 11 6 4.8558 -4.5833 0.5516 12 6 3.8515 -5.6712 0.0874 13 6 2.5016 -4.9236 0.1010 14 1 1.9728 -5.1302 1.0315 15 6 1.6513 -5.3633 -1.0926 16 7 1.2978 -6.7816 -0.9461 17 6 0.5819 -7.2709 -2.1318 18 6 0.2372 -8.7260 -1.9455 19 8 0.5561 -9.2990 -0.9250 20 7 -0.4255 -9.3909 -2.9127 21 6 -0.7395 -10.7145 -2.7430 22 1 -0.4556 -11.2247 -1.8344 23 6 -1.4222 -11.4000 -3.7404 24 7 -1.7673 -10.7793 -4.8461 25 14 -1.8495 -13.2037 -3.5094 26 1 -2.7137 -13.3583 -2.3118 27 1 -2.5716 -13.6989 -4.7088 28 1 -0.6022 -13.9881 -3.3243 29 1 -0.3633 0.0007 1.0277 30 1 -0.3633 0.8895 -0.5145 31 1 -0.3633 -0.8904 -0.5131 32 1 2.0306 2.1594 -0.0006 33 1 4.5047 1.2916 0.0011 34 1 4.5704 -2.4220 0.4510 35 1 4.5621 -3.2378 -1.1415 36 1 4.8666 -4.4996 1.6383 37 1 5.8557 -4.7853 0.1675 38 1 4.0923 -6.0142 -0.9187 39 1 3.8370 -6.5064 0.7876 40 1 0.7415 -4.7642 -1.1310 41 1 2.2176 -5.2233 -2.0133 42 1 0.7568 -6.9348 -0.1083 43 1 -0.3334 -6.6948 -2.2671 44 1 1.2158 -7.1578 -3.0113 45 1 -0.6802 -8.9327 -3.7289 46 1 -2.2436 -11.2580 -5.5425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666397165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:56 Heat of formation + Delta-G solvation = -74.199292 kcal Electronic energy + Delta-G solvation = -28475.417435 eV Core-core repulsion = 24365.746178 eV Total energy + Delta-G solvation = -4109.671257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.69788 -41.17341 -40.14706 -38.74765 -36.66750 -35.80545 -35.10481 -33.30104 -32.92558 -31.62538 -30.94294 -28.65602 -28.26608 -26.42193 -25.27966 -24.01774 -22.90183 -22.49012 -21.46644 -21.07949 -20.29577 -19.90178 -18.59826 -18.00105 -17.69829 -17.39102 -16.97846 -16.85146 -16.52865 -16.13820 -15.91828 -15.42387 -15.28204 -15.10068 -14.91411 -14.77963 -14.19086 -14.13868 -14.06068 -13.84255 -13.73238 -13.50722 -13.48692 -13.29750 -13.21942 -12.85947 -12.82321 -12.67319 -12.44179 -12.12729 -12.03405 -11.89174 -11.62231 -11.51180 -11.24494 -10.68303 -10.40092 -10.03577 -9.96705 -9.51333 -9.41467 -8.47365 -5.96692 0.00581 1.39651 1.40528 1.41199 1.51758 1.53508 1.99389 2.02342 2.07509 2.29029 2.91080 3.19172 3.40081 3.51700 3.64647 3.78285 3.80679 3.86861 3.94387 4.19112 4.23281 4.29996 4.36860 4.46045 4.50118 4.52809 4.60220 4.61197 4.67048 4.71583 4.78743 4.83621 4.99804 5.00806 5.09480 5.13912 5.19414 5.30303 5.37968 5.39649 5.46813 5.78106 5.90003 6.03142 6.25879 6.33782 6.57908 6.89089 7.10474 7.53441 8.08236 8.69919 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021568 B = 0.002072 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.889566 B =13507.780112 C =14396.699862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.097 4.097 3 C -0.237 4.237 4 C 0.015 3.985 5 O -0.163 6.163 6 C -0.113 4.113 7 C 0.606 3.394 8 O -0.555 6.555 9 N -0.606 5.606 10 C 0.096 3.904 11 C -0.124 4.124 12 C -0.109 4.109 13 C 0.143 3.857 14 H 0.065 0.935 15 C 0.058 3.942 16 N -0.665 5.665 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.996 3.004 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.180 0.820 33 H 0.258 0.742 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.343 0.657 43 H 0.057 0.943 44 H 0.105 0.895 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.131 27.233 7.812 32.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.255 4.255 4 C -0.055 4.055 5 O -0.059 6.059 6 C -0.164 4.164 7 C 0.396 3.604 8 O -0.436 6.436 9 N -0.338 5.338 10 C -0.025 4.025 11 C -0.161 4.161 12 C -0.147 4.147 13 C 0.040 3.960 14 H 0.083 0.917 15 C -0.072 4.072 16 N -0.297 5.297 17 C -0.067 4.067 18 C 0.228 3.772 19 O -0.506 6.506 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.198 0.802 33 H 0.273 0.727 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.161 0.839 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.430 26.253 8.091 31.508 hybrid contribution -1.788 -0.183 -0.392 1.839 sum 13.642 26.070 7.700 30.414 Atomic orbital electron populations 1.20411 0.88458 1.03401 1.02909 1.21001 0.98040 0.92046 0.98883 1.22073 0.92422 1.00540 1.10481 1.25392 1.01282 0.79978 0.98816 1.84151 1.26995 1.23844 1.70929 1.21454 0.82723 0.93712 1.18555 1.16552 0.84663 0.82420 0.76721 1.90839 1.16867 1.82871 1.53008 1.48499 1.08485 1.05632 1.71196 1.22685 0.77265 1.00386 1.02184 1.22841 0.99664 0.92245 1.01386 1.22537 0.91181 0.97618 1.03399 1.21494 0.98120 0.79143 0.97256 0.91710 1.22230 0.98684 0.87255 0.99012 1.60020 1.48819 1.16724 1.04174 1.21511 0.98301 0.91314 0.95547 1.20711 0.82211 0.89897 0.84417 1.90484 1.58741 1.70820 1.30545 1.41928 1.50440 1.10623 1.17989 1.19659 1.35565 0.87063 1.04143 0.90126 1.26101 0.96284 1.04611 0.94466 1.69677 1.39955 1.39159 1.07403 0.84947 0.78552 0.76660 0.77920 1.19684 1.19471 1.19526 0.90694 0.89302 0.92071 0.80216 0.72665 0.88603 0.90232 0.90065 0.87152 0.90218 0.89779 0.95504 0.90418 0.83880 0.92527 0.87653 0.77039 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.82 71.24 0.70 -1.18 16 2 C -0.10 -1.93 6.20 -19.74 -0.12 -2.05 16 3 C -0.24 -2.88 10.83 22.07 0.24 -2.64 16 4 C 0.01 0.13 12.08 67.10 0.81 0.94 16 5 O -0.16 -2.58 7.77 -5.03 -0.04 -2.62 16 6 C -0.11 -2.52 6.94 24.07 0.17 -2.36 16 7 C 0.61 16.60 7.64 86.44 0.66 17.26 16 8 O -0.55 -18.83 13.55 -4.35 -0.06 -18.88 16 9 N -0.61 -14.06 3.06 -792.75 -2.43 -16.49 16 10 C 0.10 1.49 6.33 86.86 0.55 2.04 16 11 C -0.12 -1.64 7.09 31.99 0.23 -1.42 16 12 C -0.11 -2.19 6.24 31.78 0.20 -1.99 16 13 C 0.14 3.59 3.13 45.34 0.14 3.74 16 14 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 15 C 0.06 1.70 5.05 86.31 0.44 2.14 16 16 N -0.67 -22.98 5.85 -517.94 -3.03 -26.01 16 17 C 0.07 2.48 6.16 85.56 0.53 3.00 16 18 C 0.44 21.89 7.82 87.66 0.69 22.57 16 19 O -0.62 -35.24 15.78 -3.09 -0.05 -35.29 16 20 N -0.57 -30.52 5.29 -306.97 -1.62 -32.14 16 21 C -0.33 -19.49 9.68 84.04 0.81 -18.67 16 22 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 24 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 25 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.55 6.44 -2.39 -0.02 1.53 16 32 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.26 -0.46 8.06 -2.91 -0.02 -0.48 16 34 H 0.10 1.30 5.94 -2.39 -0.01 1.29 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.68 7.80 -2.39 -0.02 1.66 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.03 0.90 6.60 -2.38 -0.02 0.88 16 41 H 0.08 2.15 8.05 -2.39 -0.02 2.13 16 42 H 0.34 12.66 8.49 -89.70 -0.76 11.90 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.40 20.13 7.90 -92.71 -0.73 19.40 16 46 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -76.03 381.81 1.11 -74.92 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.47 Total: 40.34 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.50 Total: 21.04 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -6.80 Total: -125.24 kcal Atomic # 8 Polarization: -56.65 SS G_CDS: -0.15 Total: -56.80 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -76.03 1.11 -74.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666397165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.723 kcal (2) G-P(sol) polarization free energy of solvation -76.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds