Wall clock time and date at job start Tue Mar 31 2020 19:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35277 * 126.70801 * 2 1 4 4 C 1.41927 * 103.95541 * 179.97438 * 3 2 1 5 5 O 1.35714 * 126.87755 * 179.97438 * 4 3 2 6 6 C 1.42899 * 117.00258 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 C 1.53589 * 112.24342 * 59.64743 * 10 9 7 12 12 C 1.54175 * 106.70036 * 122.01572 * 11 10 9 13 13 C 1.54772 * 104.36370 * 24.13071 * 12 11 10 14 14 C 1.54771 * 103.21060 * 322.67107 * 13 12 11 15 15 H 1.08999 * 112.62115 * 274.66374 * 14 13 12 16 16 N 1.46982 * 108.68504 * 150.20132 * 14 13 12 17 17 C 1.36938 * 125.57910 * 65.89335 * 16 14 13 18 18 H 1.08002 * 119.99967 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00353 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99745 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00304 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47048 * 60.00345 * 21 19 17 23 23 H 1.48499 * 109.47041 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46907 * 300.00490 * 21 19 17 25 25 C 1.47369 * 108.84316 * 245.87274 * 16 14 13 26 26 C 1.54872 * 104.82071 * 24.69120 * 25 16 14 27 27 N 1.30616 * 106.24709 * 0.23681 * 4 3 2 28 28 O 1.20919 * 111.49245 * 359.57930 * 27 4 3 29 29 H 1.08998 * 109.47494 * 89.99431 * 1 2 3 30 30 H 1.09004 * 109.47334 * 210.00153 * 1 2 3 31 31 H 1.09000 * 109.46905 * 329.99770 * 1 2 3 32 32 H 1.07993 * 128.01802 * 359.95952 * 3 2 1 33 33 H 1.09009 * 109.46798 * 59.99487 * 6 5 4 34 34 H 1.08998 * 109.46844 * 299.99991 * 6 5 4 35 35 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 36 36 H 1.09004 * 110.01498 * 240.47259 * 11 10 9 37 37 H 1.08990 * 110.01867 * 1.86378 * 11 10 9 38 38 H 1.08997 * 109.98239 * 265.60417 * 12 11 10 39 39 H 1.08997 * 110.92244 * 143.12577 * 12 11 10 40 40 H 1.08995 * 110.66364 * 204.23866 * 13 12 11 41 41 H 1.08999 * 110.81092 * 81.17277 * 13 12 11 42 42 H 0.96996 * 120.00231 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.36573 * 143.52334 * 25 16 14 44 44 H 1.09000 * 110.37176 * 265.74497 * 25 16 14 45 45 H 1.08998 * 110.96733 * 204.80735 * 26 25 16 46 46 H 1.08999 * 110.97195 * 81.04439 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5356 0.0006 5 8 4.7953 1.2217 0.0004 6 6 5.9988 0.4513 0.0017 7 6 7.1880 1.3770 0.0006 8 8 7.0212 2.5783 -0.0017 9 7 8.4367 0.8699 -0.0042 10 6 9.5926 1.7699 -0.0113 11 6 9.6157 2.6964 1.2134 12 6 10.9516 2.4388 1.9386 13 6 11.8854 1.8820 0.8371 14 6 10.9405 1.0016 -0.0159 15 1 10.8349 -0.0076 0.3821 16 7 11.4281 0.9938 -1.4024 17 6 12.6093 0.4475 -1.8285 18 1 13.2706 -0.0290 -1.1199 19 6 12.9564 0.5053 -3.1712 20 7 12.1503 1.0856 -4.0349 21 14 14.5674 -0.2405 -3.7526 22 1 14.5819 -1.6922 -3.4405 23 1 14.7015 -0.0475 -5.2188 24 1 15.6995 0.4260 -3.0603 25 6 10.4375 1.6695 -2.2592 26 6 9.6703 2.6181 -1.3053 27 7 3.4764 -0.7621 -0.0043 28 8 2.3084 -1.0749 0.0006 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.0311 2.1263 -0.0006 33 1 6.0280 -0.1784 -0.8877 34 1 6.0274 -0.1764 0.8923 35 1 8.5700 -0.0909 -0.0027 36 1 9.5740 3.7378 0.8942 37 1 8.7728 2.4720 1.8669 38 1 10.8106 1.7007 2.7282 39 1 11.3559 3.3638 2.3498 40 1 12.6810 1.2797 1.2755 41 1 12.3028 2.6911 0.2378 42 1 12.3925 1.1256 -4.9733 43 1 10.9387 2.2410 -3.0403 44 1 9.7574 0.9408 -2.7002 45 1 8.6737 2.8354 -1.6897 46 1 10.2304 3.5377 -1.1359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676808470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:17 Heat of formation + Delta-G solvation = 26.355901 kcal Electronic energy + Delta-G solvation = -29262.075648 eV Core-core repulsion = 25156.764792 eV Total energy + Delta-G solvation = -4105.310856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.12642 -40.38403 -39.15571 -37.74838 -34.29415 -34.12466 -33.53401 -32.76258 -31.50239 -30.08945 -28.69084 -27.99126 -26.75228 -25.76269 -23.86717 -23.65041 -22.03219 -21.02908 -20.02123 -19.64099 -18.88947 -18.13175 -18.08377 -17.17505 -16.91918 -16.80881 -16.24109 -15.63822 -14.94896 -14.87257 -14.41248 -14.18885 -14.01183 -13.91464 -13.64695 -13.54194 -13.32398 -13.01873 -12.85072 -12.78695 -12.22015 -12.02229 -11.78053 -11.65813 -11.34533 -11.19265 -11.00459 -10.85400 -10.69991 -10.55022 -10.19528 -10.10442 -9.99881 -9.80526 -9.79166 -9.64688 -9.43698 -9.41551 -8.68613 -8.63058 -6.88401 -5.66431 -3.10100 1.14703 2.04346 2.21051 2.67649 2.83189 3.38384 3.42785 3.44333 3.50389 3.95510 4.45215 4.48919 4.62383 4.66816 4.86728 4.89979 4.92261 4.96571 4.97014 5.13478 5.23082 5.29507 5.36090 5.49826 5.60906 5.62050 5.78180 5.83368 5.96468 6.04231 6.12199 6.20390 6.33251 6.39373 6.51063 6.57036 6.71320 6.75564 6.77909 6.95128 7.08206 7.51268 7.61773 7.66373 7.85512 8.00354 8.33262 8.35094 9.19187 9.80136 10.43982 11.36061 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002525 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.378901 B =11086.673677 C =12054.906832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.233 4.233 4 C 0.215 3.785 5 O -0.255 6.255 6 C 0.045 3.955 7 C 0.517 3.483 8 O -0.515 6.515 9 N -0.699 5.699 10 C 0.162 3.838 11 C -0.111 4.111 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.162 3.838 15 H 0.047 0.953 16 N -0.596 5.596 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.921 5.921 21 Si 0.914 3.086 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.152 3.848 26 C -0.142 4.142 27 N -0.411 5.411 28 O 0.098 5.902 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.253 0.747 43 H 0.109 0.891 44 H 0.009 0.991 45 H 0.065 0.935 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.025 -1.379 10.692 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.159 6.159 6 C -0.034 4.034 7 C 0.301 3.699 8 O -0.390 6.390 9 N -0.351 5.351 10 C 0.076 3.924 11 C -0.150 4.150 12 C -0.163 4.163 13 C -0.168 4.168 14 C 0.053 3.947 15 H 0.065 0.935 16 N -0.320 5.320 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.028 3.972 26 C -0.181 4.181 27 N -0.139 5.139 28 O 0.038 5.962 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.196 0.804 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.126 0.874 44 H 0.027 0.973 45 H 0.084 0.916 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.102 -1.244 10.437 21.803 hybrid contribution 0.693 -0.373 -0.369 0.869 sum -18.410 -1.617 10.069 21.045 Atomic orbital electron populations 1.20376 0.83520 1.04876 1.04409 1.24349 0.96482 0.85637 1.01016 1.21806 0.88317 1.01710 1.13602 1.22080 0.88556 0.88007 0.99694 1.86288 1.09970 1.30748 1.88934 1.22539 0.82402 0.93824 1.04669 1.19751 0.83653 0.88998 0.77533 1.90740 1.85505 1.14851 1.47924 1.45740 1.04394 1.10453 1.74505 1.21717 0.84074 0.90328 0.96239 1.22247 0.97180 0.99642 0.95893 1.22356 0.95576 1.00368 0.97959 1.22924 0.97513 1.00077 0.96288 1.21811 0.89433 0.95342 0.88072 0.93509 1.44531 1.19888 1.66835 1.00777 1.18979 0.94267 1.29550 0.92164 0.90536 1.24792 0.98708 1.01188 0.95889 1.69789 1.36360 1.48490 1.02233 0.86165 0.83015 0.78765 0.77608 1.21278 1.21632 1.21151 1.21978 0.89440 0.92768 0.93061 1.23335 1.00712 0.98606 0.95476 1.74180 0.97848 1.14261 1.27641 1.84790 1.10321 1.31984 1.69142 0.89075 0.89556 0.88793 0.80395 0.88555 0.88812 0.76422 0.91152 0.92177 0.92427 0.92100 0.92258 0.90611 0.93667 0.87375 0.97307 0.91593 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.45 36.01 0.38 0.13 16 2 C -0.01 -0.09 7.48 -35.36 -0.26 -0.35 16 3 C -0.23 -2.30 11.11 -39.23 -0.44 -2.74 16 4 C 0.21 2.83 8.01 -16.66 -0.13 2.70 16 5 O -0.25 -3.82 9.74 -38.76 -0.38 -4.20 16 6 C 0.04 0.59 6.14 36.01 0.22 0.82 16 7 C 0.52 8.33 7.06 -10.98 -0.08 8.25 16 8 O -0.52 -10.05 14.38 -14.36 -0.21 -10.26 16 9 N -0.70 -11.01 5.23 -45.35 -0.24 -11.24 16 10 C 0.16 2.91 0.73 -129.37 -0.09 2.82 16 11 C -0.11 -1.81 5.25 -25.81 -0.14 -1.95 16 12 C -0.12 -1.85 6.83 -25.18 -0.17 -2.03 16 13 C -0.13 -2.29 6.22 -24.87 -0.15 -2.44 16 14 C 0.16 3.18 3.66 -65.60 -0.24 2.94 16 15 H 0.05 0.90 7.98 -51.93 -0.41 0.49 16 16 N -0.60 -14.54 3.03 -161.13 -0.49 -15.03 16 17 C -0.22 -5.92 10.01 -15.06 -0.15 -6.07 16 18 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -26.56 10.07 55.49 0.56 -26.00 16 21 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.71 5.90 -2.58 -0.02 3.69 16 26 C -0.14 -2.92 5.77 -24.73 -0.14 -3.07 16 27 N -0.41 -5.35 11.54 30.38 0.35 -4.99 16 28 O 0.10 1.06 11.19 17.09 0.19 1.25 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.10 1.20 8.14 -51.92 -0.42 0.77 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 5.48 8.49 -40.82 -0.35 5.13 16 36 H 0.07 1.19 7.41 -51.93 -0.38 0.81 16 37 H 0.06 0.97 7.40 -51.93 -0.38 0.58 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 43 H 0.11 2.99 5.83 -51.93 -0.30 2.69 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 1.39 6.82 -51.93 -0.35 1.03 16 46 H 0.07 1.44 7.65 -51.93 -0.40 1.04 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -33.11 373.28 -7.90 -41.01 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.78 Total: 4.76 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.51 Total: 2.32 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.18 Total: -57.27 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.39 Total: -13.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.11 -7.90 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676808470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.366 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds