Wall clock time and date at job start Tue Mar 31 2020 19:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35277 * 126.70801 * 2 1 4 4 C 1.41927 * 103.95541 * 179.97438 * 3 2 1 5 5 O 1.35714 * 126.87755 * 179.97438 * 4 3 2 6 6 C 1.42899 * 117.00258 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.46497 * 119.99525 * 179.72583 * 9 7 6 11 11 C 1.53589 * 112.24342 * 59.64743 * 10 9 7 12 12 C 1.54175 * 106.70036 * 122.01572 * 11 10 9 13 13 C 1.54772 * 104.36370 * 24.13071 * 12 11 10 14 14 C 1.54771 * 103.21060 * 322.67107 * 13 12 11 15 15 H 1.08999 * 112.62115 * 274.66374 * 14 13 12 16 16 N 1.46982 * 108.68504 * 150.20132 * 14 13 12 17 17 C 1.36938 * 125.57910 * 65.89335 * 16 14 13 18 18 H 1.08002 * 119.99967 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00353 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99745 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00304 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47048 * 60.00345 * 21 19 17 23 23 H 1.48499 * 109.47041 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46907 * 300.00490 * 21 19 17 25 25 C 1.47369 * 108.84316 * 245.87274 * 16 14 13 26 26 C 1.54872 * 104.82071 * 24.69120 * 25 16 14 27 27 N 1.30616 * 106.24709 * 0.23681 * 4 3 2 28 28 O 1.20919 * 111.49245 * 359.57930 * 27 4 3 29 29 H 1.08998 * 109.47494 * 89.99431 * 1 2 3 30 30 H 1.09004 * 109.47334 * 210.00153 * 1 2 3 31 31 H 1.09000 * 109.46905 * 329.99770 * 1 2 3 32 32 H 1.07993 * 128.01802 * 359.95952 * 3 2 1 33 33 H 1.09009 * 109.46798 * 59.99487 * 6 5 4 34 34 H 1.08998 * 109.46844 * 299.99991 * 6 5 4 35 35 H 0.97000 * 119.99894 * 359.71837 * 9 7 6 36 36 H 1.09004 * 110.01498 * 240.47259 * 11 10 9 37 37 H 1.08990 * 110.01867 * 1.86378 * 11 10 9 38 38 H 1.08997 * 109.98239 * 265.60417 * 12 11 10 39 39 H 1.08997 * 110.92244 * 143.12577 * 12 11 10 40 40 H 1.08995 * 110.66364 * 204.23866 * 13 12 11 41 41 H 1.08999 * 110.81092 * 81.17277 * 13 12 11 42 42 H 0.96996 * 120.00231 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.36573 * 143.52334 * 25 16 14 44 44 H 1.09000 * 110.37176 * 265.74497 * 25 16 14 45 45 H 1.08998 * 110.96733 * 204.80735 * 26 25 16 46 46 H 1.08999 * 110.97195 * 81.04439 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5356 0.0006 5 8 4.7953 1.2217 0.0004 6 6 5.9988 0.4513 0.0017 7 6 7.1880 1.3770 0.0006 8 8 7.0212 2.5783 -0.0017 9 7 8.4367 0.8699 -0.0042 10 6 9.5926 1.7699 -0.0113 11 6 9.6157 2.6964 1.2134 12 6 10.9516 2.4388 1.9386 13 6 11.8854 1.8820 0.8371 14 6 10.9405 1.0016 -0.0159 15 1 10.8349 -0.0076 0.3821 16 7 11.4281 0.9938 -1.4024 17 6 12.6093 0.4475 -1.8285 18 1 13.2706 -0.0290 -1.1199 19 6 12.9564 0.5053 -3.1712 20 7 12.1503 1.0856 -4.0349 21 14 14.5674 -0.2405 -3.7526 22 1 14.5819 -1.6922 -3.4405 23 1 14.7015 -0.0475 -5.2188 24 1 15.6995 0.4260 -3.0603 25 6 10.4375 1.6695 -2.2592 26 6 9.6703 2.6181 -1.3053 27 7 3.4764 -0.7621 -0.0043 28 8 2.3084 -1.0749 0.0006 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.0311 2.1263 -0.0006 33 1 6.0280 -0.1784 -0.8877 34 1 6.0274 -0.1764 0.8923 35 1 8.5700 -0.0909 -0.0027 36 1 9.5740 3.7378 0.8942 37 1 8.7728 2.4720 1.8669 38 1 10.8106 1.7007 2.7282 39 1 11.3559 3.3638 2.3498 40 1 12.6810 1.2797 1.2755 41 1 12.3028 2.6911 0.2378 42 1 12.3925 1.1256 -4.9733 43 1 10.9387 2.2410 -3.0403 44 1 9.7574 0.9408 -2.7002 45 1 8.6737 2.8354 -1.6897 46 1 10.2304 3.5377 -1.1359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676808470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:16 Heat of formation + Delta-G solvation = 3.773798 kcal Electronic energy + Delta-G solvation = -29263.054882 eV Core-core repulsion = 25156.764792 eV Total energy + Delta-G solvation = -4106.290090 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.96251 -41.78718 -40.37971 -39.09461 -36.07703 -34.91368 -34.78102 -33.59352 -33.36403 -31.74531 -29.86796 -28.61249 -28.45135 -27.21992 -25.75969 -24.49535 -23.22843 -22.26503 -21.62930 -21.06605 -20.32235 -19.06628 -18.94999 -18.90669 -18.18845 -17.84110 -17.32715 -17.08335 -16.84347 -16.07813 -15.95841 -15.50538 -15.04340 -14.93558 -14.90513 -14.58546 -14.44630 -14.12235 -13.92040 -13.90494 -13.56629 -13.26350 -13.23224 -12.97330 -12.86502 -12.81329 -12.65383 -12.34253 -12.12732 -12.08829 -11.93992 -11.74287 -11.61568 -11.52074 -11.27858 -10.91283 -10.72695 -10.52063 -10.29279 -10.09211 -8.88714 -7.74782 -5.19993 0.43648 1.15665 1.18725 1.39580 1.47325 1.49897 1.56056 2.14963 2.39995 2.50608 3.09893 3.28516 3.34526 3.55885 3.59645 3.82368 3.87309 3.92373 3.93282 3.94745 3.97289 4.33288 4.36781 4.38327 4.44139 4.55214 4.60368 4.77380 4.78356 4.79645 4.84014 4.90977 4.91536 5.06193 5.12885 5.19729 5.27274 5.29762 5.44906 5.49452 5.58907 5.63185 5.78766 5.82714 6.29399 6.39680 7.05308 7.10370 7.21087 7.78826 8.42637 9.26494 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002525 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.378901 B =11086.673677 C =12054.906832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.250 4.250 4 C 0.188 3.812 5 O -0.278 6.278 6 C 0.052 3.948 7 C 0.519 3.481 8 O -0.551 6.551 9 N -0.694 5.694 10 C 0.171 3.829 11 C -0.105 4.105 12 C -0.109 4.109 13 C -0.123 4.123 14 C 0.154 3.846 15 H 0.061 0.939 16 N -0.612 5.612 17 C -0.224 4.224 18 H 0.087 0.913 19 C -0.071 4.071 20 N -0.952 5.952 21 Si 0.978 3.022 22 H -0.278 1.278 23 H -0.300 1.300 24 H -0.277 1.277 25 C 0.162 3.838 26 C -0.130 4.130 27 N -0.433 5.433 28 O 0.092 5.908 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.196 0.804 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.413 0.587 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.244 0.756 43 H 0.072 0.928 44 H -0.017 1.017 45 H 0.058 0.942 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 -2.250 12.986 25.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 C -0.272 4.272 4 C -0.009 4.009 5 O -0.184 6.184 6 C -0.026 4.026 7 C 0.305 3.695 8 O -0.429 6.429 9 N -0.346 5.346 10 C 0.084 3.916 11 C -0.144 4.144 12 C -0.147 4.147 13 C -0.163 4.163 14 C 0.048 3.952 15 H 0.079 0.921 16 N -0.336 5.336 17 C -0.353 4.353 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.203 1.203 25 C 0.037 3.963 26 C -0.170 4.170 27 N -0.161 5.161 28 O 0.032 5.968 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.213 0.787 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.249 0.751 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.001 0.999 45 H 0.077 0.923 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.380 -2.151 12.781 24.152 hybrid contribution 0.965 -0.122 -1.083 1.456 sum -19.415 -2.273 11.698 22.781 Atomic orbital electron populations 1.20683 0.79782 1.06657 1.05952 1.25173 0.98110 0.84083 0.98039 1.22176 0.87216 1.03197 1.14590 1.22491 0.88773 0.88634 1.00982 1.86227 1.10794 1.31847 1.89484 1.22470 0.81101 0.92904 1.06118 1.20176 0.84203 0.88870 0.76294 1.90720 1.86033 1.16535 1.49569 1.45649 1.03937 1.10851 1.74196 1.21546 0.84250 0.90223 0.95550 1.22188 0.98523 0.98568 0.95097 1.22294 0.93400 1.01842 0.97179 1.22786 0.97886 0.99036 0.96630 1.22078 0.90640 0.96598 0.85931 0.92114 1.44720 1.19405 1.66686 1.02811 1.19368 0.94998 1.28520 0.92385 0.89562 1.25614 1.01924 1.02437 0.96315 1.70054 1.38037 1.50241 1.01918 0.85149 0.79531 0.78274 0.76371 1.20388 1.22612 1.20263 1.21623 0.89088 0.92334 0.93234 1.23136 0.99454 0.98111 0.96274 1.74158 0.99088 1.14369 1.28491 1.84741 1.10066 1.32973 1.69016 0.87396 0.88011 0.86726 0.78662 0.87841 0.86436 0.75071 0.91995 0.91402 0.89971 0.90188 0.91284 0.93145 0.94607 0.91011 0.99937 0.92326 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.45 71.24 0.74 0.51 16 2 C 0.01 0.13 7.48 25.00 0.19 0.32 16 3 C -0.25 -4.67 11.11 22.50 0.25 -4.42 16 4 C 0.19 4.90 8.01 85.79 0.69 5.59 16 5 O -0.28 -8.34 9.74 -71.31 -0.69 -9.03 16 6 C 0.05 1.37 6.14 71.24 0.44 1.81 16 7 C 0.52 16.52 7.06 87.66 0.62 17.14 16 8 O -0.55 -21.57 14.38 16.00 0.23 -21.34 16 9 N -0.69 -21.31 5.23 -415.78 -2.18 -23.49 16 10 C 0.17 6.02 0.73 5.19 0.00 6.03 16 11 C -0.10 -3.24 5.25 31.19 0.16 -3.08 16 12 C -0.11 -2.91 6.83 31.60 0.22 -2.70 16 13 C -0.12 -4.20 6.22 31.80 0.20 -4.01 16 14 C 0.15 5.92 3.66 46.24 0.17 6.08 16 15 H 0.06 2.20 7.98 -2.39 -0.02 2.18 16 16 N -0.61 -30.26 3.03 -663.69 -2.01 -32.27 16 17 C -0.22 -12.04 10.01 84.03 0.84 -11.20 16 18 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 19 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 20 N -0.95 -57.15 10.07 21.65 0.22 -56.93 16 21 Si 0.98 45.37 29.55 68.60 2.03 47.39 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.16 8.27 5.90 86.85 0.51 8.78 16 26 C -0.13 -5.52 5.77 31.89 0.18 -5.33 16 27 N -0.43 -11.02 11.54 -172.60 -1.99 -13.02 16 28 O 0.09 1.88 11.19 71.31 0.80 2.68 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 31 H 0.11 -0.03 8.14 -2.39 -0.02 -0.04 16 32 H 0.20 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.41 10.78 8.49 -92.71 -0.79 9.99 16 36 H 0.06 2.03 7.41 -2.39 -0.02 2.01 16 37 H 0.07 2.02 7.40 -2.39 -0.02 2.01 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.97 8.09 -2.39 -0.02 1.95 16 42 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.07 4.21 5.83 -2.39 -0.01 4.20 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.06 2.55 6.82 -2.39 -0.02 2.54 16 46 H 0.07 2.88 7.65 -2.39 -0.02 2.86 16 Total: -1.00 -74.64 373.28 2.30 -72.34 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.22 Total: 21.63 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.68 Total: 12.03 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -5.96 Total: -125.71 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: 0.33 Total: -27.69 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -74.64 2.30 -72.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676808470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.118 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds