Wall clock time and date at job start Tue Mar 31 2020 19:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34179 * 127.02206 * 2 1 4 4 O 1.34218 * 109.11942 * 179.89609 * 3 2 1 5 5 C 1.33646 * 110.91119 * 0.38714 * 4 3 2 6 6 C 1.36416 * 108.39973 * 359.77039 * 5 4 3 7 7 C 1.47375 * 127.19406 * 180.02562 * 6 5 4 8 8 O 1.21613 * 119.99845 * 180.02562 * 7 6 5 9 9 N 1.34770 * 120.00307 * 359.97438 * 7 6 5 10 10 C 1.46494 * 120.00301 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.47415 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.84578 * 43.80797 * 11 10 9 13 13 C 1.53777 * 113.61582 * 174.99709 * 11 10 9 14 14 C 1.53788 * 87.07705 * 139.98324 * 13 11 10 15 15 H 1.09002 * 113.61111 * 220.01535 * 14 13 11 16 16 N 1.46899 * 113.61196 * 89.20350 * 14 13 11 17 17 C 1.46897 * 111.00109 * 154.99619 * 16 14 13 18 18 C 1.50700 * 109.47351 * 179.97438 * 17 16 14 19 19 O 1.21292 * 119.99774 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00112 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00152 * 180.02562 * 20 18 17 22 22 H 1.08008 * 119.99733 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00387 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99623 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00204 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46914 * 60.00545 * 25 23 21 27 27 H 1.48505 * 109.47078 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47371 * 299.99966 * 25 23 21 29 29 C 1.53773 * 113.61685 * 272.50147 * 11 10 9 30 30 H 1.09002 * 109.47152 * 269.68241 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.68342 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.68323 * 1 2 3 33 33 H 1.08000 * 125.43845 * 0.02562 * 3 2 1 34 34 H 1.08006 * 125.80089 * 179.74386 * 5 4 3 35 35 H 0.97003 * 120.00134 * 0.02562 * 9 7 6 36 36 H 1.08997 * 109.47389 * 300.00170 * 10 9 7 37 37 H 1.09004 * 109.47254 * 60.00359 * 10 9 7 38 38 H 1.08993 * 113.61612 * 254.53007 * 13 11 10 39 39 H 1.09000 * 113.61445 * 25.44094 * 13 11 10 40 40 H 1.00898 * 111.00018 * 278.95587 * 16 14 13 41 41 H 1.08998 * 109.47323 * 300.00420 * 17 16 14 42 42 H 1.09007 * 109.47135 * 60.00080 * 17 16 14 43 43 H 0.97002 * 119.99971 * 359.97438 * 20 18 17 44 44 H 0.97006 * 119.99796 * 179.97438 * 24 23 21 45 45 H 1.09005 * 113.61525 * 334.56464 * 29 11 10 46 46 H 1.08999 * 113.61680 * 105.46865 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6587 0.0023 5 6 3.6623 -0.6759 -0.0046 6 6 2.3923 -1.1738 -0.0065 7 6 1.9914 -2.5920 -0.0131 8 8 0.8125 -2.8906 -0.0146 9 7 2.9312 -3.5580 -0.0184 10 6 2.5327 -4.9677 -0.0255 11 6 3.7820 -5.8509 -0.0312 12 1 4.5467 -5.5069 0.6653 13 6 3.4749 -7.3533 0.0840 14 6 4.5910 -7.5804 -0.9494 15 1 4.3539 -8.3477 -1.6865 16 7 5.9206 -7.7565 -0.3502 17 6 6.8007 -8.5268 -1.2390 18 6 8.1527 -8.6861 -0.5925 19 8 8.3622 -8.2056 0.5013 20 7 9.1289 -9.3625 -1.2296 21 6 10.3586 -9.5079 -0.6413 22 1 10.5452 -9.0799 0.3327 23 6 11.3649 -10.2056 -1.2979 24 7 11.1379 -10.7258 -2.4832 25 14 13.0407 -10.4030 -0.4965 26 1 12.8903 -11.1208 0.7948 27 1 13.9306 -11.1813 -1.3953 28 1 13.6335 -9.0637 -0.2524 29 6 4.3194 -6.1489 -1.4409 30 1 -0.3633 -0.0057 1.0277 31 1 -0.3633 -0.8871 -0.5188 32 1 -0.3633 0.8928 -0.5089 33 1 1.9895 2.1011 0.0004 34 1 4.5703 -1.2608 -0.0084 35 1 3.8715 -3.3198 -0.0176 36 1 1.9397 -5.1821 0.8636 37 1 1.9390 -5.1730 -0.9164 38 1 3.6976 -7.7704 1.0660 39 1 2.4832 -7.6252 -0.2776 40 1 6.3327 -6.8657 -0.1165 41 1 6.3654 -9.5098 -1.4186 42 1 6.9115 -7.9998 -2.1867 43 1 8.9611 -9.7471 -2.1042 44 1 11.8406 -11.2127 -2.9418 45 1 3.5585 -6.0915 -2.2194 46 1 5.2238 -5.5938 -1.6898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688943390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:20 Heat of formation + Delta-G solvation = -41.850199 kcal Electronic energy + Delta-G solvation = -27245.114177 eV Core-core repulsion = 23136.845682 eV Total energy + Delta-G solvation = -4108.268495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94996 -40.10252 -39.17488 -38.04336 -35.14018 -34.17696 -34.05626 -33.12381 -31.26155 -31.09954 -28.21008 -27.57596 -26.23979 -25.76848 -24.17733 -23.62768 -22.31184 -20.85810 -20.50612 -19.34097 -19.09071 -18.31656 -17.91716 -16.61512 -16.40572 -16.30990 -16.06579 -15.58953 -15.39536 -15.17371 -14.82729 -14.55610 -14.40387 -13.92561 -13.76085 -13.67014 -13.58495 -13.37861 -13.07867 -12.85378 -12.74459 -12.60441 -12.32027 -11.93440 -11.87679 -11.56625 -11.54304 -11.05438 -10.95968 -10.59746 -10.46078 -10.39330 -10.23570 -10.09839 -9.93578 -9.52425 -9.32928 -9.07949 -8.48478 -8.08503 -7.98245 -6.43864 -3.84882 0.96217 1.65116 2.52696 2.85834 3.06287 3.18413 3.24378 3.28601 3.88011 4.02034 4.11312 4.22394 4.24737 4.42289 4.45454 4.59107 4.68012 4.86728 4.89607 5.03062 5.08218 5.15022 5.24444 5.36485 5.38910 5.45754 5.51508 5.54951 5.58618 5.65218 5.66237 5.71152 5.78666 5.88961 6.01767 6.07464 6.09128 6.11576 6.23533 6.29695 6.55407 7.19368 7.22833 7.52790 7.62476 7.93554 8.03629 8.58677 9.15369 9.51716 10.03008 10.73675 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.001708 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.768413 B =16390.455297 C =17508.203522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.133 4.133 3 C -0.047 4.047 4 O -0.171 6.171 5 C 0.024 3.976 6 C -0.236 4.236 7 C 0.586 3.414 8 O -0.536 6.536 9 N -0.724 5.724 10 C 0.132 3.868 11 C -0.124 4.124 12 H 0.099 0.901 13 C -0.121 4.121 14 C 0.067 3.933 15 H 0.084 0.916 16 N -0.648 5.648 17 C 0.051 3.949 18 C 0.439 3.561 19 O -0.585 6.585 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C -0.166 4.166 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.208 0.792 34 H 0.212 0.788 35 H 0.399 0.601 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.350 0.650 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.085 0.915 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.045 18.966 0.184 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C -0.113 4.113 4 O -0.066 6.066 5 C -0.047 4.047 6 C -0.240 4.240 7 C 0.373 3.627 8 O -0.414 6.414 9 N -0.376 5.376 10 C 0.009 3.991 11 C -0.142 4.142 12 H 0.117 0.883 13 C -0.160 4.160 14 C -0.044 4.044 15 H 0.102 0.898 16 N -0.280 5.280 17 C -0.081 4.081 18 C 0.225 3.775 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.205 4.205 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.224 0.776 34 H 0.228 0.772 35 H 0.233 0.767 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.170 0.830 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.226 0.774 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.554 18.576 1.166 26.996 hybrid contribution 1.404 0.266 -0.945 1.713 sum -18.151 18.843 0.221 26.164 Atomic orbital electron populations 1.20240 0.88291 1.03197 1.02631 1.21437 0.97327 0.90354 1.04354 1.23749 0.79640 0.99771 1.08160 1.83796 1.29697 1.22319 1.70770 1.24472 0.98827 0.81226 1.00145 1.21446 0.93409 0.94333 1.14840 1.17258 0.85565 0.83726 0.76128 1.90767 1.17335 1.83340 1.49938 1.45884 1.09408 1.06567 1.75717 1.21442 0.96741 0.78504 1.02398 1.22820 0.97073 0.95983 0.98371 0.88310 1.23029 0.98234 0.93470 1.01248 1.22584 0.90562 0.95600 0.95653 0.89792 1.59928 1.01288 1.24101 1.42659 1.21716 0.93293 0.99129 0.93996 1.19815 0.85641 0.84574 0.87486 1.90520 1.82166 1.52816 1.21406 1.41856 1.10850 1.47840 1.19359 1.19657 0.87289 1.32433 1.03675 0.87969 1.25265 1.00136 0.96649 0.95843 1.69607 1.34916 1.36246 1.13485 0.85911 0.81029 0.78492 0.78745 1.19864 1.20965 1.19935 1.23795 1.01588 0.98703 0.96440 0.91166 0.89942 0.91703 0.77579 0.77203 0.76733 0.91193 0.91228 0.89981 0.89723 0.82970 0.89494 0.93795 0.77442 0.91802 0.89658 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.00 36.01 0.36 -0.33 16 2 C -0.13 -1.18 6.37 -102.49 -0.65 -1.83 16 3 C -0.05 -0.33 11.96 29.30 0.35 0.03 16 4 O -0.17 -1.32 10.52 7.66 0.08 -1.24 16 5 C 0.02 0.17 11.61 30.08 0.35 0.52 16 6 C -0.24 -2.23 6.31 -103.28 -0.65 -2.88 16 7 C 0.59 6.45 7.81 -12.55 -0.10 6.36 16 8 O -0.54 -7.69 15.41 5.27 0.08 -7.61 16 9 N -0.72 -6.17 5.55 -61.40 -0.34 -6.52 16 10 C 0.13 1.18 5.51 -4.04 -0.02 1.15 16 11 C -0.12 -1.08 3.52 -89.81 -0.32 -1.39 16 12 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 13 C -0.12 -1.18 7.44 -25.92 -0.19 -1.37 16 14 C 0.07 0.76 4.27 -66.90 -0.29 0.47 16 15 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 16 N -0.65 -9.82 6.19 -107.13 -0.66 -10.49 16 17 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 18 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 19 O -0.58 -15.59 15.78 5.55 0.09 -15.51 16 20 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 25 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 C -0.17 -1.51 7.16 -25.93 -0.19 -1.70 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.82 6.92 -51.93 -0.36 0.46 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.21 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.21 0.69 7.47 -52.48 -0.39 0.29 16 35 H 0.40 2.42 7.44 -40.82 -0.30 2.12 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.66 7.84 -51.93 -0.41 0.25 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.35 5.41 7.83 -39.29 -0.31 5.11 16 41 H 0.09 1.38 8.13 -51.93 -0.42 0.95 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 46 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -34.45 391.43 -7.55 -42.00 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.64 Total: 13.30 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.70 Total: 1.98 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.34 Total: -54.67 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.25 Total: -24.35 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.45 -7.55 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688943390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.155 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds