Wall clock time and date at job start Tue Mar 31 2020 19:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44070 * 2 1 4 4 C 1.36545 * 106.70917 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98783 * 180.02562 * 4 3 2 6 6 O 1.21694 * 120.00205 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00176 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99852 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46747 * 180.02562 * 8 7 5 10 10 C 1.53945 * 113.73339 * 271.72807 * 9 8 7 11 11 N 1.47960 * 86.17938 * 221.91807 * 10 9 8 12 12 C 1.46902 * 110.99435 * 137.58104 * 11 10 9 13 13 C 1.50696 * 109.47251 * 70.64177 * 12 11 10 14 14 O 1.21298 * 119.99798 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00284 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99842 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00399 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99656 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46614 * 90.00560 * 20 18 16 22 22 H 1.48500 * 109.47004 * 210.00173 * 20 18 16 23 23 H 1.48498 * 109.47241 * 330.00565 * 20 18 16 24 24 C 1.47965 * 90.76448 * 24.69170 * 11 10 9 25 25 O 1.34911 * 108.02206 * 0.02562 * 4 3 2 26 26 C 1.33931 * 109.38652 * 359.97438 * 25 4 3 27 27 C 1.50700 * 125.61431 * 179.97438 * 26 25 4 28 28 H 1.08997 * 109.46979 * 90.02911 * 1 2 3 29 29 H 1.09004 * 109.46936 * 210.02679 * 1 2 3 30 30 H 1.08994 * 109.47307 * 330.02305 * 1 2 3 31 31 H 1.08003 * 126.64463 * 0.26137 * 3 2 1 32 32 H 0.97000 * 119.99616 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47523 * 299.99926 * 8 7 5 34 34 H 1.08997 * 109.47037 * 60.00707 * 8 7 5 35 35 H 1.09001 * 112.93991 * 43.43230 * 9 8 7 36 36 H 1.08995 * 113.75870 * 336.24073 * 10 9 8 37 37 H 1.09003 * 113.75806 * 107.60318 * 10 9 8 38 38 H 1.09007 * 109.46847 * 190.64233 * 12 11 10 39 39 H 1.09001 * 109.47398 * 310.63923 * 12 11 10 40 40 H 0.97003 * 119.99563 * 0.02562 * 15 13 12 41 41 H 0.96999 * 120.00610 * 179.97438 * 19 18 16 42 42 H 1.08995 * 113.75691 * 220.99441 * 24 11 10 43 43 H 1.09000 * 113.75738 * 89.62381 * 24 11 10 44 44 H 1.08998 * 109.47131 * 0.03035 * 27 26 25 45 45 H 1.09005 * 109.46477 * 120.02904 * 27 26 25 46 46 H 1.09000 * 109.47245 * 240.02580 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4942 -0.0003 6 8 4.7470 2.7077 0.0011 7 7 6.0521 0.9093 -0.0004 8 6 7.2625 1.7346 -0.0007 9 6 8.4964 0.8299 -0.0014 10 6 8.9716 0.4288 1.4069 11 7 10.3427 0.6658 0.9040 12 6 11.1526 1.3799 1.9001 13 6 11.4548 0.4599 3.0548 14 8 11.0371 -0.6788 3.0483 15 7 12.1901 0.9021 4.0942 16 6 12.4646 0.0652 5.1448 17 1 12.0920 -0.9484 5.1395 18 6 13.2231 0.5209 6.2161 19 7 13.6770 1.7542 6.2225 20 14 13.5965 -0.6191 7.6481 21 1 14.8627 -1.3483 7.3829 22 1 13.7363 0.1789 8.8927 23 1 12.4877 -1.5939 7.8069 24 6 9.8261 1.5957 -0.1245 25 8 3.5858 -0.6803 -0.0015 26 6 2.3097 -1.0870 -0.0010 27 6 1.8456 -2.5208 -0.0022 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8901 0.5134 31 1 2.0265 2.1625 0.0040 32 1 6.1245 -0.0580 -0.0011 33 1 7.2733 2.3637 -0.8907 34 1 7.2735 2.3637 0.8893 35 1 8.4078 -0.0090 -0.6917 36 1 8.6642 1.1236 2.1885 37 1 8.7699 -0.6124 1.6585 38 1 12.0861 1.7072 1.4423 39 1 10.6014 2.2480 2.2618 40 1 12.5245 1.8126 4.0991 41 1 14.2062 2.0725 6.9705 42 1 10.3073 1.4866 -1.0964 43 1 9.7688 2.6317 0.2093 44 1 2.7114 -3.1829 -0.0031 45 1 1.2451 -2.7089 0.8879 46 1 1.2445 -2.7073 -0.8921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692292984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:45 Heat of formation + Delta-G solvation = -28.107139 kcal Electronic energy + Delta-G solvation = -27575.250436 eV Core-core repulsion = 23467.577885 eV Total energy + Delta-G solvation = -4107.672551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.06748 -40.30185 -39.37625 -37.71722 -35.21386 -34.64362 -33.89147 -32.42507 -31.37661 -30.83405 -29.15442 -27.93120 -26.27887 -25.98305 -24.80743 -22.99186 -22.09948 -21.47971 -20.26971 -19.42551 -19.19292 -18.13789 -17.81289 -16.89156 -16.47827 -16.19577 -15.95105 -15.45437 -15.26775 -15.03018 -14.60331 -14.36689 -14.11452 -14.02111 -13.67622 -13.63078 -13.42806 -13.35676 -13.25404 -13.08606 -12.90337 -12.69589 -12.50820 -12.12749 -11.94089 -11.73284 -11.49354 -11.35504 -11.07879 -10.73709 -10.63384 -10.42577 -10.38715 -10.21212 -10.04717 -9.50587 -9.40319 -8.71445 -8.65862 -8.23255 -7.96500 -6.41774 -3.82629 0.74068 1.92540 2.28053 2.89789 2.93459 3.17618 3.26147 3.31928 3.88649 3.98201 4.17926 4.22757 4.37165 4.40904 4.49968 4.61964 4.79955 4.92198 4.95476 5.00378 5.09461 5.18136 5.22797 5.24395 5.30177 5.37971 5.39499 5.46419 5.52095 5.57496 5.58826 5.66809 5.72790 5.74607 5.83234 5.99744 6.09794 6.10004 6.26082 6.29982 6.54104 6.61744 7.17210 7.21778 7.54924 7.81127 8.05501 8.61210 9.17732 9.54001 10.05681 10.75972 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.001929 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.471296 B =14509.461127 C =15464.627509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.195 4.195 3 C -0.113 4.113 4 C -0.079 4.079 5 C 0.603 3.397 6 O -0.523 6.523 7 N -0.715 5.715 8 C 0.127 3.873 9 C -0.135 4.135 10 C 0.026 3.974 11 N -0.453 5.453 12 C 0.010 3.990 13 C 0.443 3.557 14 O -0.580 6.580 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.009 3.991 25 O -0.160 6.160 26 C 0.019 3.981 27 C -0.078 4.078 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.408 0.592 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.102 -1.716 -15.428 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.197 4.197 3 C -0.134 4.134 4 C -0.131 4.131 5 C 0.389 3.611 6 O -0.401 6.401 7 N -0.366 5.366 8 C 0.004 3.996 9 C -0.154 4.154 10 C -0.103 4.103 11 N -0.176 5.176 12 C -0.122 4.122 13 C 0.229 3.771 14 O -0.464 6.464 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.120 4.120 25 O -0.056 6.056 26 C -0.034 4.034 27 C -0.134 4.134 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.243 0.757 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.582 -2.240 -15.442 27.449 hybrid contribution 0.149 0.553 1.160 1.293 sum -22.433 -1.687 -14.282 26.647 Atomic orbital electron populations 1.20178 0.88546 1.02867 1.02235 1.20215 0.97574 0.91755 1.10112 1.21822 0.90524 1.00493 1.00557 1.21957 0.96166 0.80310 1.14663 1.16531 0.81270 0.86331 0.76961 1.90889 1.86033 1.12248 1.50892 1.45904 1.05285 1.11123 1.74238 1.21542 0.81960 0.93254 1.02843 1.23362 0.92956 0.99287 0.99823 1.23883 0.88967 1.03423 0.94033 1.68409 1.09958 1.30819 1.08367 1.22466 0.99775 0.95809 0.94157 1.19690 0.84320 0.88808 0.84318 1.90517 1.56074 1.19623 1.80179 1.41873 1.46296 1.14673 1.17266 1.19692 1.30345 0.96720 0.96083 0.87951 1.25268 0.96898 0.96607 0.99218 1.69609 1.36295 1.15570 1.32826 0.85855 0.78966 0.79542 0.79906 1.20384 1.20927 1.19447 1.23967 0.93344 0.95934 0.98793 1.84012 1.28900 1.21759 1.70966 1.22619 0.80556 0.97250 1.02942 1.20414 1.02121 0.86999 1.03906 0.91301 0.91450 0.91261 0.82289 0.75711 0.90706 0.90781 0.87600 0.91397 0.88748 0.89103 0.92769 0.77489 0.91869 0.89028 0.91031 0.90052 0.89174 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.17 36.01 0.37 -0.08 16 2 C -0.20 -1.67 6.14 -104.93 -0.64 -2.32 16 3 C -0.11 -1.18 10.57 -39.39 -0.42 -1.60 16 4 C -0.08 -0.91 7.13 -36.80 -0.26 -1.17 16 5 C 0.60 7.61 7.79 -12.86 -0.10 7.51 16 6 O -0.52 -8.07 16.86 5.19 0.09 -7.99 16 7 N -0.71 -7.62 5.55 -61.63 -0.34 -7.96 16 8 C 0.13 1.34 5.53 -4.04 -0.02 1.32 16 9 C -0.14 -1.48 3.94 -89.68 -0.35 -1.83 16 10 C 0.03 0.39 6.31 -2.76 -0.02 0.37 16 11 N -0.45 -7.42 5.95 -239.71 -1.43 -8.85 16 12 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 13 C 0.44 10.60 7.59 -10.99 -0.08 10.52 16 14 O -0.58 -15.82 15.13 5.54 0.08 -15.74 16 15 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 16 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 17 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 20 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.01 0.11 7.54 -2.76 -0.02 0.09 16 25 O -0.16 -1.67 10.40 5.00 0.05 -1.62 16 26 C 0.02 0.16 7.31 -35.42 -0.26 -0.10 16 27 C -0.08 -0.36 9.92 36.01 0.36 0.00 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.27 7.88 -51.93 -0.41 -0.14 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.41 3.73 8.23 -40.82 -0.34 3.40 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.86 7.84 -51.93 -0.41 0.46 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.05 7.53 -51.93 -0.39 0.66 16 37 H 0.09 1.58 8.09 -51.93 -0.42 1.16 16 38 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 39 H 0.05 0.87 7.69 -51.93 -0.40 0.48 16 40 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -34.63 393.23 -8.52 -43.15 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.83 Total: 10.61 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -1.72 Total: 4.79 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -1.10 Total: -55.35 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: 0.22 Total: -25.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.63 -8.52 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692292984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.047 kcal (2) G-P(sol) polarization free energy of solvation -34.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds