Wall clock time and date at job start Tue Mar 31 2020 19:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44070 * 2 1 4 4 C 1.36545 * 106.70917 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98783 * 180.02562 * 4 3 2 6 6 O 1.21694 * 120.00205 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00176 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99852 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46747 * 180.02562 * 8 7 5 10 10 C 1.53945 * 113.73339 * 271.72807 * 9 8 7 11 11 N 1.47960 * 86.17938 * 221.91807 * 10 9 8 12 12 C 1.46902 * 110.99435 * 137.58104 * 11 10 9 13 13 C 1.50696 * 109.47251 * 70.64177 * 12 11 10 14 14 O 1.21298 * 119.99798 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00284 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99842 * 179.97438 * 15 13 12 17 17 H 1.07995 * 120.00399 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99656 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00267 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46614 * 90.00560 * 20 18 16 22 22 H 1.48500 * 109.47004 * 210.00173 * 20 18 16 23 23 H 1.48498 * 109.47241 * 330.00565 * 20 18 16 24 24 C 1.47965 * 90.76448 * 24.69170 * 11 10 9 25 25 O 1.34911 * 108.02206 * 0.02562 * 4 3 2 26 26 C 1.33931 * 109.38652 * 359.97438 * 25 4 3 27 27 C 1.50700 * 125.61431 * 179.97438 * 26 25 4 28 28 H 1.08997 * 109.46979 * 90.02911 * 1 2 3 29 29 H 1.09004 * 109.46936 * 210.02679 * 1 2 3 30 30 H 1.08994 * 109.47307 * 330.02305 * 1 2 3 31 31 H 1.08003 * 126.64463 * 0.26137 * 3 2 1 32 32 H 0.97000 * 119.99616 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47523 * 299.99926 * 8 7 5 34 34 H 1.08997 * 109.47037 * 60.00707 * 8 7 5 35 35 H 1.09001 * 112.93991 * 43.43230 * 9 8 7 36 36 H 1.08995 * 113.75870 * 336.24073 * 10 9 8 37 37 H 1.09003 * 113.75806 * 107.60318 * 10 9 8 38 38 H 1.09007 * 109.46847 * 190.64233 * 12 11 10 39 39 H 1.09001 * 109.47398 * 310.63923 * 12 11 10 40 40 H 0.97003 * 119.99563 * 0.02562 * 15 13 12 41 41 H 0.96999 * 120.00610 * 179.97438 * 19 18 16 42 42 H 1.08995 * 113.75691 * 220.99441 * 24 11 10 43 43 H 1.09000 * 113.75738 * 89.62381 * 24 11 10 44 44 H 1.08998 * 109.47131 * 0.03035 * 27 26 25 45 45 H 1.09005 * 109.46477 * 120.02904 * 27 26 25 46 46 H 1.09000 * 109.47245 * 240.02580 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4942 -0.0003 6 8 4.7470 2.7077 0.0011 7 7 6.0521 0.9093 -0.0004 8 6 7.2625 1.7346 -0.0007 9 6 8.4964 0.8299 -0.0014 10 6 8.9716 0.4288 1.4069 11 7 10.3427 0.6658 0.9040 12 6 11.1526 1.3799 1.9001 13 6 11.4548 0.4599 3.0548 14 8 11.0371 -0.6788 3.0483 15 7 12.1901 0.9021 4.0942 16 6 12.4646 0.0652 5.1448 17 1 12.0920 -0.9484 5.1395 18 6 13.2231 0.5209 6.2161 19 7 13.6770 1.7542 6.2225 20 14 13.5965 -0.6191 7.6481 21 1 14.8627 -1.3483 7.3829 22 1 13.7363 0.1789 8.8927 23 1 12.4877 -1.5939 7.8069 24 6 9.8261 1.5957 -0.1245 25 8 3.5858 -0.6803 -0.0015 26 6 2.3097 -1.0870 -0.0010 27 6 1.8456 -2.5208 -0.0022 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8901 0.5134 31 1 2.0265 2.1625 0.0040 32 1 6.1245 -0.0580 -0.0011 33 1 7.2733 2.3637 -0.8907 34 1 7.2735 2.3637 0.8893 35 1 8.4078 -0.0090 -0.6917 36 1 8.6642 1.1236 2.1885 37 1 8.7699 -0.6124 1.6585 38 1 12.0861 1.7072 1.4423 39 1 10.6014 2.2480 2.2618 40 1 12.5245 1.8126 4.0991 41 1 14.2062 2.0725 6.9705 42 1 10.3073 1.4866 -1.0964 43 1 9.7688 2.6317 0.2093 44 1 2.7114 -3.1829 -0.0031 45 1 1.2451 -2.7089 0.8879 46 1 1.2445 -2.7073 -0.8921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692292984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:44 Heat of formation + Delta-G solvation = -55.063718 kcal Electronic energy + Delta-G solvation = -27576.419361 eV Core-core repulsion = 23467.577885 eV Total energy + Delta-G solvation = -4108.841476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.79086 -41.45660 -40.47865 -39.50311 -36.19619 -35.89946 -35.33643 -33.35062 -33.08466 -32.12429 -29.73187 -29.00139 -27.32914 -27.08071 -26.38884 -24.13825 -23.03619 -22.26741 -21.21045 -20.98497 -20.30627 -19.91082 -18.92264 -17.87225 -17.64358 -17.45427 -16.84116 -16.62872 -16.57872 -16.37476 -16.10698 -15.68853 -15.50940 -15.09445 -14.77402 -14.54660 -14.32956 -14.14417 -14.04459 -13.73959 -13.65752 -13.61538 -13.55501 -13.44877 -13.10546 -13.07884 -12.87319 -12.47050 -12.44932 -12.36378 -12.14438 -11.88883 -11.70593 -11.51881 -11.43388 -10.78111 -10.35470 -10.32477 -10.03973 -9.70323 -9.38793 -8.48835 -5.97800 -0.06414 1.24106 1.36001 1.39538 1.52416 1.53327 2.01514 2.02349 2.08719 2.27008 2.80397 3.17466 3.24149 3.41983 3.56524 3.64040 3.77117 3.85549 4.14353 4.16699 4.28497 4.29587 4.37703 4.43495 4.48556 4.50713 4.59188 4.64693 4.68870 4.69859 4.74786 4.82837 4.87217 4.87747 5.03676 5.04257 5.11469 5.12640 5.29916 5.37501 5.41175 5.54602 5.81730 5.88275 6.06230 6.33040 6.57606 6.89913 7.10154 7.53255 8.08941 8.68569 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.001929 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.471296 B =14509.461127 C =15464.627509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C -0.119 4.119 4 C -0.108 4.108 5 C 0.602 3.398 6 O -0.559 6.559 7 N -0.707 5.707 8 C 0.133 3.867 9 C -0.107 4.107 10 C 0.017 3.983 11 N -0.481 5.481 12 C 0.022 3.978 13 C 0.439 3.561 14 O -0.619 6.619 15 N -0.574 5.574 16 C -0.334 4.334 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.273 1.273 24 C 0.017 3.983 25 O -0.169 6.169 26 C 0.020 3.980 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.415 0.585 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.093 -2.070 -16.278 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.140 4.140 4 C -0.160 4.160 5 C 0.389 3.611 6 O -0.441 6.441 7 N -0.357 5.357 8 C 0.009 3.991 9 C -0.126 4.126 10 C -0.112 4.112 11 N -0.204 5.204 12 C -0.109 4.109 13 C 0.226 3.774 14 O -0.505 6.505 15 N -0.212 5.212 16 C -0.463 4.463 17 H 0.096 0.904 18 C -0.214 4.214 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.196 1.196 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.111 4.111 25 O -0.066 6.066 26 C -0.033 4.033 27 C -0.134 4.134 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.251 0.749 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.126 0.874 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -23.559 -2.589 -16.311 28.771 hybrid contribution 0.385 0.602 1.386 1.560 sum -23.174 -1.987 -14.924 27.636 Atomic orbital electron populations 1.20272 0.86282 1.03869 1.03243 1.20598 0.99139 0.90965 1.09977 1.22083 0.90780 1.01296 0.99817 1.21785 0.96042 0.80933 1.17227 1.16686 0.81961 0.86050 0.76387 1.90853 1.86641 1.13664 1.52904 1.45865 1.04941 1.11547 1.73395 1.21488 0.81570 0.93059 1.02951 1.23157 0.92964 0.99466 0.97000 1.23847 0.89276 1.01795 0.96285 1.68407 1.10387 1.32737 1.08887 1.22363 1.01433 0.94801 0.92331 1.20781 0.82467 0.89123 0.84985 1.90484 1.57107 1.21769 1.81132 1.41954 1.47079 1.14612 1.17538 1.19650 1.32174 0.96486 0.98019 0.90401 1.26062 0.96054 0.98143 1.01119 1.69670 1.36202 1.16548 1.33673 0.84921 0.78657 0.77706 0.77009 1.19564 1.19461 1.19807 1.24090 0.92802 0.96021 0.98196 1.83999 1.30191 1.21153 1.71277 1.23471 0.79769 0.99039 1.00995 1.20653 1.02696 0.84365 1.05713 0.90208 0.89606 0.91144 0.82234 0.74854 0.89411 0.91838 0.86210 0.92289 0.91298 0.87196 0.90684 0.77031 0.91274 0.86877 0.89377 0.89752 0.87424 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.17 71.24 0.72 0.01 16 2 C -0.21 -3.30 6.14 -20.06 -0.12 -3.42 16 3 C -0.12 -2.50 10.57 22.39 0.24 -2.26 16 4 C -0.11 -2.53 7.13 24.07 0.17 -2.36 16 5 C 0.60 15.49 7.79 86.44 0.67 16.17 16 6 O -0.56 -17.73 16.86 -4.33 -0.07 -17.80 16 7 N -0.71 -14.93 5.55 -467.11 -2.59 -17.52 16 8 C 0.13 2.66 5.53 86.38 0.48 3.14 16 9 C -0.11 -2.18 3.94 -10.14 -0.04 -2.22 16 10 C 0.02 0.51 6.31 86.41 0.55 1.06 16 11 N -0.48 -15.28 5.95 -912.30 -5.43 -20.70 16 12 C 0.02 0.78 5.31 85.56 0.45 1.23 16 13 C 0.44 21.38 7.59 87.66 0.67 22.05 16 14 O -0.62 -34.89 15.13 -3.09 -0.05 -34.93 16 15 N -0.57 -30.11 5.29 -306.98 -1.62 -31.73 16 16 C -0.33 -19.29 9.68 84.04 0.81 -18.47 16 17 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 19 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 20 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.02 0.36 7.54 86.41 0.65 1.02 16 25 O -0.17 -3.48 10.40 -5.02 -0.05 -3.54 16 26 C 0.02 0.30 7.31 24.97 0.18 0.49 16 27 C -0.08 -0.52 9.92 71.24 0.71 0.19 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.45 7.88 -2.38 -0.02 0.43 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.41 7.49 8.23 -92.71 -0.76 6.72 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.45 7.84 -2.39 -0.02 1.43 16 35 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 1.86 7.53 -2.39 -0.02 1.84 16 37 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 38 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 39 H 0.08 2.31 7.69 -2.39 -0.02 2.30 16 40 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 41 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 1.59 7.75 -2.39 -0.02 1.57 16 44 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 46 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -77.19 393.23 -1.37 -78.56 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.48 Total: 35.81 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 6.61 Total: 16.32 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -9.36 Total: -119.94 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -0.17 Total: -56.27 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -77.19 -1.37 -78.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692292984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.496 kcal (2) G-P(sol) polarization free energy of solvation -77.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds