Wall clock time and date at job start Tue Mar 31 2020 19:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.57795 * 2 1 4 4 C 1.34513 * 106.84285 * 180.23807 * 3 2 1 5 5 O 1.34311 * 108.41692 * 359.76376 * 4 3 2 6 6 C 1.34304 * 109.47815 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.78877 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46991 * 270.02023 * 7 6 5 9 9 O 1.21278 * 120.00513 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99663 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00111 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47304 * 180.02562 * 11 10 8 13 13 H 1.09005 * 112.79163 * 75.80829 * 12 11 10 14 14 C 1.53515 * 113.47547 * 206.61754 * 12 11 10 15 15 C 1.53515 * 83.57623 * 140.79154 * 14 12 11 16 16 N 1.47480 * 113.47694 * 304.99859 * 12 11 10 17 17 C 1.46898 * 111.00405 * 106.53094 * 16 12 11 18 18 C 1.50700 * 109.47325 * 187.49822 * 17 16 12 19 19 O 1.21292 * 119.99927 * 0.02562 * 18 17 16 20 20 N 1.34769 * 119.99972 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00178 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99575 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99933 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00569 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99698 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47572 * 59.99511 * 25 23 21 27 27 H 1.48496 * 109.47176 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46916 * 299.99591 * 25 23 21 29 29 H 1.09004 * 109.47105 * 270.16065 * 1 2 3 30 30 H 1.09001 * 109.47269 * 30.16511 * 1 2 3 31 31 H 1.09002 * 109.47341 * 150.16869 * 1 2 3 32 32 H 1.08003 * 126.57993 * 359.97438 * 3 2 1 33 33 H 1.07994 * 125.79319 * 179.75273 * 4 3 2 34 34 H 1.09009 * 109.46810 * 150.02305 * 7 6 5 35 35 H 1.09000 * 109.47286 * 30.02359 * 7 6 5 36 36 H 0.97005 * 120.00357 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47044 * 59.99446 * 11 10 8 38 38 H 1.09000 * 109.46789 * 300.00092 * 11 10 8 39 39 H 1.08994 * 114.17159 * 27.14259 * 14 12 11 40 40 H 1.09004 * 114.34450 * 254.44427 * 14 12 11 41 41 H 1.09005 * 113.47774 * 219.21143 * 15 14 12 42 42 H 1.08997 * 113.53532 * 88.75298 * 15 14 12 43 43 H 1.09002 * 109.46877 * 307.49737 * 17 16 12 44 44 H 1.08994 * 109.47113 * 67.49979 * 17 16 12 45 45 H 0.97001 * 120.00327 * 0.02562 * 20 18 17 46 46 H 0.97002 * 120.00264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6811 -0.0053 5 8 3.5848 -0.6616 -0.0033 6 6 2.3086 -1.0802 0.0027 7 6 1.8523 -2.5164 0.0062 8 6 1.6943 -2.9967 -1.4135 9 8 1.9297 -2.2468 -2.3371 10 7 1.2916 -4.2597 -1.6567 11 6 1.1385 -4.7268 -3.0368 12 6 0.6739 -6.1845 -3.0332 13 1 -0.3818 -6.2905 -2.7831 14 6 1.0849 -6.9604 -4.2924 15 6 1.3330 -8.1032 -3.2979 16 7 1.5538 -7.0798 -2.2591 17 6 0.9229 -7.4714 -0.9917 18 6 1.9159 -8.2301 -0.1495 19 8 3.0390 -8.4250 -0.5642 20 7 1.5564 -8.6911 1.0648 21 6 2.4600 -9.3810 1.8312 22 1 3.4598 -9.5552 1.4616 23 6 2.0892 -9.8567 3.0829 24 7 0.8727 -9.6452 3.5324 25 14 3.3206 -10.7960 4.1274 26 1 4.4951 -9.9311 4.4059 27 1 2.6828 -11.1915 5.4088 28 1 3.7628 -12.0116 3.3981 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8885 -0.5164 31 1 -0.3634 -0.8915 -0.5112 32 1 2.0366 2.1691 -0.0004 33 1 4.5059 1.2924 -0.0106 34 1 0.8960 -2.5925 0.5240 35 1 2.5925 -3.1317 0.5177 36 1 1.1029 -4.8594 -0.9179 37 1 2.0949 -4.6511 -3.5541 38 1 0.3989 -4.1113 -3.5488 39 1 1.9874 -6.5840 -4.7739 40 1 0.2697 -7.1465 -4.9917 41 1 2.2226 -8.6908 -3.5246 42 1 0.4539 -8.7220 -3.1178 43 1 0.5991 -6.5789 -0.4561 44 1 0.0603 -8.1055 -1.1960 45 1 0.6584 -8.5350 1.3966 46 1 0.6139 -9.9770 4.4064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699635314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:09 Heat of formation + Delta-G solvation = -19.533199 kcal Electronic energy + Delta-G solvation = -28612.106947 eV Core-core repulsion = 24504.806190 eV Total energy + Delta-G solvation = -4107.300757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64808 -40.53998 -39.29272 -37.79886 -34.58234 -34.31626 -33.94340 -32.27348 -31.42486 -30.71841 -29.32580 -28.10548 -26.03576 -25.87685 -23.80640 -23.13806 -21.57780 -20.84800 -19.91133 -19.49974 -19.33285 -17.95516 -17.47759 -17.09867 -16.21575 -16.15470 -15.86152 -15.61128 -15.47475 -15.02264 -14.57938 -14.41775 -14.13485 -13.92207 -13.76798 -13.50096 -13.37213 -13.22477 -12.85599 -12.80264 -12.54337 -12.47652 -12.25091 -11.91086 -11.64377 -11.57366 -11.51535 -11.36507 -11.08890 -10.91518 -10.58259 -10.47034 -10.24684 -9.93902 -9.65513 -9.53093 -9.06322 -8.87092 -8.40184 -8.27059 -8.00569 -6.45708 -3.86606 1.64671 2.48804 2.60880 2.86786 3.17320 3.23529 3.26104 3.28354 3.82785 3.90297 4.18792 4.38975 4.46864 4.69803 4.77029 4.79059 4.84043 4.93947 4.98039 5.07152 5.14843 5.23640 5.27014 5.33891 5.35868 5.40612 5.50785 5.57085 5.61688 5.67350 5.72795 5.74750 5.84578 5.92439 5.93374 6.12200 6.13715 6.19098 6.34856 6.49147 6.51530 7.10522 7.11174 7.45392 7.51391 8.01482 8.18526 8.57382 9.14486 9.49499 10.01796 10.71901 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.002968 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.641376 B = 9432.755340 C =11592.851643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.168 4.168 3 C -0.212 4.212 4 C -0.037 4.037 5 O -0.169 6.169 6 C 0.010 3.990 7 C -0.066 4.066 8 C 0.516 3.484 9 O -0.535 6.535 10 N -0.720 5.720 11 C 0.142 3.858 12 C 0.004 3.996 13 H 0.083 0.917 14 C -0.134 4.134 15 C 0.005 3.995 16 N -0.433 5.433 17 C 0.007 3.993 18 C 0.444 3.556 19 O -0.572 6.572 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.024 3.976 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.146 0.854 33 H 0.201 0.799 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.402 0.598 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.391 0.609 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 15.338 -8.704 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.170 4.170 3 C -0.231 4.231 4 C -0.105 4.105 5 O -0.065 6.065 6 C -0.041 4.041 7 C -0.106 4.106 8 C 0.302 3.698 9 O -0.412 6.412 10 N -0.372 5.372 11 C 0.018 3.982 12 C -0.107 4.107 13 H 0.101 0.899 14 C -0.172 4.172 15 C -0.124 4.124 16 N -0.156 5.156 17 C -0.125 4.125 18 C 0.229 3.771 19 O -0.455 6.455 20 N -0.203 5.203 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.218 0.782 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.224 0.776 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.942 15.680 -9.245 18.625 hybrid contribution -1.023 -0.791 1.211 1.772 sum -4.965 14.889 -8.034 17.632 Atomic orbital electron populations 1.20163 0.89382 1.02569 1.01768 1.20130 0.96982 0.91995 1.07877 1.21647 0.92638 0.99626 1.09217 1.23935 0.99697 0.80615 1.06276 1.84008 1.28640 1.22761 1.71105 1.21245 0.81208 0.94904 1.06743 1.20113 1.04493 0.89939 0.96023 1.20318 0.76824 0.81833 0.90850 1.90720 1.49588 1.54960 1.45899 1.45901 1.69072 1.12789 1.09487 1.21308 1.01724 0.92207 0.82927 1.23783 0.97063 0.93758 0.96056 0.89925 1.23157 1.02275 0.96478 0.95262 1.23738 1.01892 0.95086 0.91639 1.68871 1.39328 1.07752 0.99601 1.22569 0.96566 0.99918 0.93442 1.19602 0.89020 0.85161 0.83320 1.90545 1.21365 1.61261 1.72332 1.41864 1.14644 1.49230 1.14533 1.19641 0.95879 1.29995 0.97367 0.88013 1.25235 0.96932 0.98169 0.97473 1.69591 1.17914 1.46669 1.20225 0.85935 0.79979 0.79818 0.78620 1.19856 1.20960 1.19922 0.91482 0.91559 0.91900 0.83636 0.78212 0.85948 0.86567 0.76172 0.90759 0.91271 0.88571 0.90422 0.89138 0.91371 0.90158 0.92085 0.77600 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.99 36.01 0.36 -0.43 16 2 C -0.17 -2.07 6.16 -104.74 -0.65 -2.71 16 3 C -0.21 -2.36 10.87 -39.70 -0.43 -2.79 16 4 C -0.04 -0.42 12.09 29.42 0.36 -0.06 16 5 O -0.17 -2.40 10.65 5.69 0.06 -2.34 16 6 C 0.01 0.13 5.81 -35.63 -0.21 -0.08 16 7 C -0.07 -0.77 5.85 -29.04 -0.17 -0.94 16 8 C 0.52 7.15 7.82 -10.99 -0.09 7.06 16 9 O -0.54 -9.30 16.03 5.56 0.09 -9.22 16 10 N -0.72 -8.95 5.46 -60.30 -0.33 -9.28 16 11 C 0.14 1.69 5.81 -4.04 -0.02 1.66 16 12 C 0.00 0.04 3.25 -71.43 -0.23 -0.19 16 13 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 14 C -0.13 -1.34 8.00 -26.20 -0.21 -1.55 16 15 C 0.01 0.07 7.69 -7.53 -0.06 0.01 16 16 N -0.43 -6.52 5.39 -237.92 -1.28 -7.80 16 17 C 0.01 0.12 5.04 -4.98 -0.03 0.09 16 18 C 0.44 10.01 7.83 -10.99 -0.09 9.93 16 19 O -0.57 -15.28 16.01 5.55 0.09 -15.19 16 20 N -0.57 -13.71 5.29 -10.96 -0.06 -13.77 16 21 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 25 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.60 7.78 -51.93 -0.40 0.20 16 32 H 0.15 1.25 8.06 -52.48 -0.42 0.82 16 33 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.05 7.78 -51.92 -0.40 0.65 16 35 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.40 4.72 6.20 -40.82 -0.25 4.47 16 37 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.07 0.82 7.44 -51.93 -0.39 0.44 16 43 H 0.08 1.09 6.25 -51.93 -0.32 0.77 16 44 H 0.06 0.87 7.35 -51.93 -0.38 0.49 16 45 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -35.31 389.01 -8.17 -43.48 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.60 Total: 13.46 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.70 Total: 2.23 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.95 Total: -53.99 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: 0.24 Total: -26.74 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.31 -8.17 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699635314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.947 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds