Wall clock time and date at job start Tue Mar 31 2020 19:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.57795 * 2 1 4 4 C 1.34513 * 106.84285 * 180.23807 * 3 2 1 5 5 O 1.34311 * 108.41692 * 359.76376 * 4 3 2 6 6 C 1.34304 * 109.47815 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.78877 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46991 * 270.02023 * 7 6 5 9 9 O 1.21278 * 120.00513 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99663 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00111 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47304 * 180.02562 * 11 10 8 13 13 H 1.09005 * 112.79163 * 75.80829 * 12 11 10 14 14 C 1.53515 * 113.47547 * 206.61754 * 12 11 10 15 15 C 1.53515 * 83.57623 * 140.79154 * 14 12 11 16 16 N 1.47480 * 113.47694 * 304.99859 * 12 11 10 17 17 C 1.46898 * 111.00405 * 106.53094 * 16 12 11 18 18 C 1.50700 * 109.47325 * 187.49822 * 17 16 12 19 19 O 1.21292 * 119.99927 * 0.02562 * 18 17 16 20 20 N 1.34769 * 119.99972 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00178 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99575 * 359.97438 * 21 20 18 23 23 C 1.38944 * 119.99933 * 180.02562 * 21 20 18 24 24 N 1.31405 * 120.00569 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99698 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47572 * 59.99511 * 25 23 21 27 27 H 1.48496 * 109.47176 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46916 * 299.99591 * 25 23 21 29 29 H 1.09004 * 109.47105 * 270.16065 * 1 2 3 30 30 H 1.09001 * 109.47269 * 30.16511 * 1 2 3 31 31 H 1.09002 * 109.47341 * 150.16869 * 1 2 3 32 32 H 1.08003 * 126.57993 * 359.97438 * 3 2 1 33 33 H 1.07994 * 125.79319 * 179.75273 * 4 3 2 34 34 H 1.09009 * 109.46810 * 150.02305 * 7 6 5 35 35 H 1.09000 * 109.47286 * 30.02359 * 7 6 5 36 36 H 0.97005 * 120.00357 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47044 * 59.99446 * 11 10 8 38 38 H 1.09000 * 109.46789 * 300.00092 * 11 10 8 39 39 H 1.08994 * 114.17159 * 27.14259 * 14 12 11 40 40 H 1.09004 * 114.34450 * 254.44427 * 14 12 11 41 41 H 1.09005 * 113.47774 * 219.21143 * 15 14 12 42 42 H 1.08997 * 113.53532 * 88.75298 * 15 14 12 43 43 H 1.09002 * 109.46877 * 307.49737 * 17 16 12 44 44 H 1.08994 * 109.47113 * 67.49979 * 17 16 12 45 45 H 0.97001 * 120.00327 * 0.02562 * 20 18 17 46 46 H 0.97002 * 120.00264 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6156 0.6811 -0.0053 5 8 3.5848 -0.6616 -0.0033 6 6 2.3086 -1.0802 0.0027 7 6 1.8523 -2.5164 0.0062 8 6 1.6943 -2.9967 -1.4135 9 8 1.9297 -2.2468 -2.3371 10 7 1.2916 -4.2597 -1.6567 11 6 1.1385 -4.7268 -3.0368 12 6 0.6739 -6.1845 -3.0332 13 1 -0.3818 -6.2905 -2.7831 14 6 1.0849 -6.9604 -4.2924 15 6 1.3330 -8.1032 -3.2979 16 7 1.5538 -7.0798 -2.2591 17 6 0.9229 -7.4714 -0.9917 18 6 1.9159 -8.2301 -0.1495 19 8 3.0390 -8.4250 -0.5642 20 7 1.5564 -8.6911 1.0648 21 6 2.4600 -9.3810 1.8312 22 1 3.4598 -9.5552 1.4616 23 6 2.0892 -9.8567 3.0829 24 7 0.8727 -9.6452 3.5324 25 14 3.3206 -10.7960 4.1274 26 1 4.4951 -9.9311 4.4059 27 1 2.6828 -11.1915 5.4088 28 1 3.7628 -12.0116 3.3981 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8885 -0.5164 31 1 -0.3634 -0.8915 -0.5112 32 1 2.0366 2.1691 -0.0004 33 1 4.5059 1.2924 -0.0106 34 1 0.8960 -2.5925 0.5240 35 1 2.5925 -3.1317 0.5177 36 1 1.1029 -4.8594 -0.9179 37 1 2.0949 -4.6511 -3.5541 38 1 0.3989 -4.1113 -3.5488 39 1 1.9874 -6.5840 -4.7739 40 1 0.2697 -7.1465 -4.9917 41 1 2.2226 -8.6908 -3.5246 42 1 0.4539 -8.7220 -3.1178 43 1 0.5991 -6.5789 -0.4561 44 1 0.0603 -8.1055 -1.1960 45 1 0.6584 -8.5350 1.3966 46 1 0.6139 -9.9770 4.4064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699635314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:08 Heat of formation + Delta-G solvation = -46.881621 kcal Electronic energy + Delta-G solvation = -28613.292864 eV Core-core repulsion = 24504.806190 eV Total energy + Delta-G solvation = -4108.486674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.54085 -41.61356 -40.42710 -39.54671 -35.94383 -35.59637 -35.22067 -33.31985 -33.16706 -32.02574 -30.21388 -29.01642 -27.53303 -26.90039 -25.35131 -24.09781 -22.45638 -21.86786 -21.07100 -20.83088 -20.41647 -19.89858 -18.46960 -18.03493 -17.69936 -17.23373 -16.92354 -16.78399 -16.57896 -16.38721 -16.24729 -15.61282 -15.35681 -15.24376 -15.04494 -14.53222 -14.41014 -14.16065 -13.98006 -13.92865 -13.63032 -13.51941 -13.39138 -13.17683 -12.95855 -12.87158 -12.60893 -12.43887 -12.36537 -12.32325 -12.14152 -11.94454 -11.63192 -11.47817 -11.04032 -10.51005 -10.35987 -10.10334 -9.98958 -9.70601 -9.28566 -8.45515 -5.93432 0.74258 1.39393 1.41962 1.51782 1.54814 1.63794 2.00771 2.08110 2.27955 2.34472 2.82823 3.20751 3.35904 3.56559 3.59748 3.81191 3.84222 3.98055 4.05536 4.09442 4.17837 4.23153 4.29104 4.35689 4.39827 4.41773 4.52890 4.63620 4.66623 4.81150 4.84490 4.87540 4.88741 4.97001 5.01234 5.15120 5.22089 5.30936 5.32067 5.42233 5.49460 5.68775 5.94259 6.12925 6.22272 6.44349 6.63128 7.15255 7.15558 7.59340 8.16571 8.71381 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.002968 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.641376 B = 9432.755340 C =11592.851643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.177 4.177 3 C -0.225 4.225 4 C -0.044 4.044 5 O -0.198 6.198 6 C -0.025 4.025 7 C -0.063 4.063 8 C 0.515 3.485 9 O -0.576 6.576 10 N -0.714 5.714 11 C 0.141 3.859 12 C 0.017 3.983 13 H 0.113 0.887 14 C -0.115 4.115 15 C -0.003 4.003 16 N -0.470 5.470 17 C 0.021 3.979 18 C 0.442 3.558 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.332 4.332 22 H 0.074 0.926 23 C -0.009 4.009 24 N -0.918 5.918 25 Si 0.986 3.014 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.274 1.274 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.170 0.830 33 H 0.234 0.766 34 H 0.152 0.848 35 H 0.117 0.883 36 H 0.407 0.593 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 16.085 -8.670 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.178 4.178 3 C -0.243 4.243 4 C -0.111 4.111 5 O -0.095 6.095 6 C -0.075 4.075 7 C -0.102 4.102 8 C 0.302 3.698 9 O -0.455 6.455 10 N -0.365 5.365 11 C 0.017 3.983 12 C -0.093 4.093 13 H 0.130 0.870 14 C -0.153 4.153 15 C -0.132 4.132 16 N -0.193 5.193 17 C -0.111 4.111 18 C 0.229 3.771 19 O -0.505 6.505 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.092 0.908 23 C -0.209 4.209 24 N -0.559 5.559 25 Si 0.810 3.190 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.199 1.199 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.187 0.813 33 H 0.251 0.749 34 H 0.170 0.830 35 H 0.135 0.865 36 H 0.243 0.757 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.912 16.416 -9.205 19.727 hybrid contribution -0.387 -0.979 1.141 1.552 sum -6.298 15.437 -8.064 18.520 Atomic orbital electron populations 1.20235 0.87686 1.02955 1.02920 1.20608 0.98397 0.92088 1.06712 1.22048 0.92570 1.00624 1.09106 1.24732 1.01312 0.79897 1.05129 1.83983 1.29422 1.24297 1.71805 1.21640 0.81320 0.95957 1.08545 1.20195 1.05968 0.89309 0.94746 1.20698 0.75972 0.81793 0.91347 1.90692 1.51524 1.56079 1.47238 1.45907 1.68268 1.12397 1.09972 1.21367 1.01156 0.93183 0.82550 1.23835 0.97786 0.92203 0.95426 0.86963 1.23099 1.03162 0.94036 0.95025 1.23825 1.01307 0.95671 0.92411 1.68825 1.41318 1.09470 0.99717 1.22457 0.94941 1.00452 0.93249 1.20783 0.89522 0.83900 0.82876 1.90514 1.23993 1.62776 1.73258 1.41913 1.14478 1.49580 1.15181 1.19556 0.95713 1.32165 0.98774 0.90761 1.25915 0.98611 0.98447 0.97891 1.69639 1.18752 1.46823 1.20652 0.85087 0.77976 0.78414 0.77480 1.19933 1.19407 1.19937 0.89846 0.90656 0.92020 0.81265 0.74940 0.82998 0.86535 0.75663 0.92916 0.89739 0.89206 0.87005 0.91957 0.89838 0.87440 0.89520 0.76906 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 9.99 71.24 0.71 -0.71 16 2 C -0.18 -4.19 6.16 -19.94 -0.12 -4.31 16 3 C -0.22 -4.76 10.87 22.19 0.24 -4.51 16 4 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 5 O -0.20 -5.69 10.65 -2.57 -0.03 -5.72 16 6 C -0.02 -0.67 5.81 24.83 0.14 -0.52 16 7 C -0.06 -1.43 5.85 29.10 0.17 -1.26 16 8 C 0.51 14.08 7.82 87.66 0.69 14.77 16 9 O -0.58 -20.20 16.03 -3.02 -0.05 -20.25 16 10 N -0.71 -16.88 5.46 -463.08 -2.53 -19.41 16 11 C 0.14 3.12 5.81 86.38 0.50 3.62 16 12 C 0.02 0.33 3.25 42.19 0.14 0.46 16 13 H 0.11 1.59 7.91 -2.38 -0.02 1.58 16 14 C -0.12 -2.03 8.00 30.94 0.25 -1.78 16 15 C 0.00 -0.08 7.69 83.58 0.64 0.56 16 16 N -0.47 -13.52 5.39 -906.64 -4.89 -18.41 16 17 C 0.02 0.63 5.04 85.56 0.43 1.06 16 18 C 0.44 20.05 7.83 87.66 0.69 20.74 16 19 O -0.62 -34.13 16.01 -3.07 -0.05 -34.18 16 20 N -0.57 -28.09 5.29 -306.99 -1.62 -29.71 16 21 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 22 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 23 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 24 N -0.92 -47.95 13.05 21.66 0.28 -47.67 16 25 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.08 7.78 -2.39 -0.02 1.06 16 32 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.15 2.39 7.78 -2.38 -0.02 2.37 16 35 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.41 8.83 6.20 -92.70 -0.57 8.26 16 37 H 0.05 1.40 7.88 -2.39 -0.02 1.38 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.72 7.94 -2.39 -0.02 1.70 16 40 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.08 1.81 7.44 -2.39 -0.02 1.79 16 43 H 0.11 2.63 6.25 -2.39 -0.01 2.62 16 44 H 0.09 2.20 7.35 -2.39 -0.02 2.18 16 45 H 0.40 18.13 7.90 -92.71 -0.73 17.40 16 46 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -79.52 389.01 -0.57 -80.09 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: -0.28 Total: 40.54 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.57 Total: 10.32 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -8.76 Total: -115.19 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -0.12 Total: -60.14 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -79.52 -0.57 -80.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699635314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.212 kcal (2) G-P(sol) polarization free energy of solvation -79.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds