Wall clock time and date at job start Tue Mar 31 2020 19:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40371 * 126.44360 * 2 1 4 4 C 1.36546 * 106.70801 * 179.97438 * 3 2 1 5 5 C 1.46653 * 125.98696 * 179.97438 * 4 3 2 6 6 O 1.21690 * 120.00034 * 6.00313 * 5 4 3 7 7 N 1.34777 * 120.00200 * 185.99414 * 5 4 3 8 8 C 1.46499 * 119.99613 * 356.13624 * 7 5 4 9 9 C 1.46498 * 120.00345 * 176.12641 * 7 5 4 10 10 C 1.53503 * 114.17295 * 240.00671 * 9 7 5 11 11 N 1.47486 * 87.93296 * 220.33078 * 10 9 7 12 12 C 1.46896 * 111.00144 * 138.70435 * 11 10 9 13 13 C 1.50701 * 109.46959 * 170.00096 * 12 11 10 14 14 O 1.21286 * 119.99949 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00060 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00289 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99769 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00085 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00372 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47212 * 89.99838 * 20 18 16 22 22 H 1.48503 * 109.47016 * 209.99714 * 20 18 16 23 23 H 1.48499 * 109.46923 * 329.99726 * 20 18 16 24 24 C 1.47479 * 87.83439 * 27.01075 * 11 10 9 25 25 O 1.34915 * 108.02260 * 0.23822 * 4 3 2 26 26 C 1.33928 * 109.38638 * 359.59818 * 25 4 3 27 27 C 1.50701 * 125.61510 * 180.19329 * 26 25 4 28 28 H 1.08998 * 109.46991 * 89.98116 * 1 2 3 29 29 H 1.09003 * 109.47373 * 209.98184 * 1 2 3 30 30 H 1.09005 * 109.47357 * 329.97746 * 1 2 3 31 31 H 1.07998 * 126.64552 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47324 * 275.69712 * 8 7 5 33 33 H 1.09001 * 109.47608 * 35.70257 * 8 7 5 34 34 H 1.09004 * 109.47171 * 155.69873 * 8 7 5 35 35 H 1.09000 * 113.25327 * 12.96107 * 9 7 5 36 36 H 1.09006 * 113.47836 * 105.56352 * 10 9 7 37 37 H 1.09004 * 113.47952 * 335.09172 * 10 9 7 38 38 H 1.09005 * 109.47190 * 49.99979 * 12 11 10 39 39 H 1.08998 * 109.47461 * 290.00080 * 12 11 10 40 40 H 0.97008 * 119.99956 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00304 * 180.02562 * 19 18 16 42 42 H 1.08995 * 113.47543 * 87.75516 * 24 11 10 43 43 H 1.08999 * 113.47744 * 218.22466 * 24 11 10 44 44 H 1.08995 * 109.47505 * 270.24495 * 27 26 25 45 45 H 1.08996 * 109.47473 * 30.25400 * 27 26 25 46 46 H 1.09010 * 109.47001 * 150.24403 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6681 0.0006 5 6 4.8379 1.4941 0.0003 6 8 4.7503 2.7029 0.1096 7 7 6.0485 0.9143 -0.1210 8 6 6.1602 -0.5457 -0.1672 9 6 7.2528 1.7441 -0.2067 10 6 8.0568 1.5534 -1.5003 11 7 9.2839 1.6279 -0.6856 12 6 10.2693 0.6313 -1.1255 13 6 11.5880 0.8944 -0.4452 14 8 11.6964 1.8213 0.3295 15 7 12.6469 0.0998 -0.6977 16 6 13.8465 0.3388 -0.0784 17 1 13.9430 1.1642 0.6114 18 6 14.9382 -0.4801 -0.3391 19 7 14.8210 -1.4841 -1.1788 20 14 16.5729 -0.1540 0.5042 21 1 16.6289 -0.9064 1.7832 22 1 17.6822 -0.5956 -0.3788 23 1 16.7071 1.2993 0.7785 24 6 8.4926 1.1225 0.4517 25 8 3.5857 -0.6804 -0.0044 26 6 2.3097 -1.0870 0.0007 27 6 1.8455 -2.5208 0.0018 28 1 -0.3633 0.0003 -1.0276 29 1 -0.3634 -0.8902 0.5136 30 1 -0.3634 0.8898 0.5142 31 1 2.0267 2.1625 0.0004 32 1 6.1763 -0.9412 0.8483 33 1 5.3063 -0.9586 -0.7045 34 1 7.0810 -0.8236 -0.6801 35 1 7.0772 2.7863 0.0602 36 1 7.9513 2.3800 -2.2031 37 1 7.9041 0.5803 -1.9672 38 1 10.3977 0.6996 -2.2058 39 1 9.9183 -0.3669 -0.8638 40 1 12.5603 -0.6413 -1.3176 41 1 15.5830 -2.0560 -1.3605 42 1 8.4560 0.0345 0.5057 43 1 8.7562 1.5839 1.4033 44 1 1.7334 -2.8672 -1.0256 45 1 2.5802 -3.1403 0.5160 46 1 0.8869 -2.5920 0.5158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699709490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:49 Heat of formation + Delta-G solvation = -4.516742 kcal Electronic energy + Delta-G solvation = -28272.684376 eV Core-core repulsion = 24166.034782 eV Total energy + Delta-G solvation = -4106.649595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.13339 -40.82083 -39.07829 -37.72820 -35.50426 -34.60708 -33.86800 -32.40706 -31.27937 -30.19605 -29.11878 -27.33212 -27.08188 -25.93212 -25.37097 -23.84818 -22.28728 -21.35244 -19.95786 -19.46089 -19.10538 -17.91685 -17.58570 -17.02370 -16.92482 -16.11437 -15.94268 -15.71045 -15.04378 -14.83545 -14.59628 -14.27226 -14.07050 -13.84940 -13.65929 -13.56940 -13.51110 -13.31452 -13.21850 -13.07231 -12.85135 -12.68799 -12.64501 -12.28058 -12.24097 -11.91500 -11.66658 -11.49077 -11.08354 -10.93373 -10.72899 -10.47710 -10.38411 -10.20544 -10.05582 -9.49311 -8.97706 -8.86218 -8.67466 -8.22107 -7.95299 -6.40925 -3.81559 0.72830 1.91097 2.20680 2.70934 2.88522 3.18430 3.26960 3.33399 3.90400 3.98144 4.10012 4.25324 4.35772 4.39056 4.41349 4.70646 4.75028 4.80685 4.92169 4.94407 4.97643 5.11270 5.15498 5.19750 5.24824 5.28057 5.30305 5.33723 5.41781 5.47699 5.57198 5.58476 5.63748 5.69321 5.76222 5.85285 6.00764 6.08768 6.17157 6.27456 6.47288 6.56943 7.00158 7.12081 7.56163 7.75699 8.06922 8.63023 9.19486 9.55260 10.07799 10.76973 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.001928 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.005642 B =14520.191995 C =15184.920029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.193 4.193 3 C -0.113 4.113 4 C -0.075 4.075 5 C 0.603 3.397 6 O -0.518 6.518 7 N -0.595 5.595 8 C 0.069 3.931 9 C 0.117 3.883 10 C -0.018 4.018 11 N -0.432 5.432 12 C 0.011 3.989 13 C 0.446 3.554 14 O -0.573 6.573 15 N -0.567 5.567 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.904 5.904 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.004 4.004 25 O -0.155 6.155 26 C 0.010 3.990 27 C -0.078 4.078 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.159 0.841 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.065 -5.235 -1.120 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.194 4.194 3 C -0.134 4.134 4 C -0.127 4.127 5 C 0.392 3.608 6 O -0.395 6.395 7 N -0.326 5.326 8 C -0.073 4.073 9 C 0.013 3.987 10 C -0.148 4.148 11 N -0.155 5.155 12 C -0.121 4.121 13 C 0.231 3.769 14 O -0.456 6.456 15 N -0.204 5.204 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.757 3.243 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.134 4.134 25 O -0.052 6.052 26 C -0.042 4.042 27 C -0.134 4.134 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.224 0.776 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.169 -3.672 -0.555 28.413 hybrid contribution 0.500 -1.303 -0.208 1.411 sum -27.670 -4.976 -0.763 28.124 Atomic orbital electron populations 1.20197 0.88647 1.02788 1.02264 1.20209 0.97496 0.91759 1.09953 1.21818 0.90491 1.00489 1.00555 1.21924 0.96012 0.80310 1.14454 1.16666 0.81056 0.86234 0.76881 1.90886 1.85573 1.12610 1.50454 1.47721 1.05830 1.07545 1.71527 1.22057 1.03571 0.78875 1.02826 1.22910 0.81560 0.97147 0.97061 1.24413 0.90858 1.02267 0.97308 1.68793 1.04008 1.39219 1.03443 1.22500 0.94511 0.94079 1.01001 1.19630 0.84963 0.85651 0.86639 1.90533 1.84169 1.32071 1.38816 1.41865 1.09298 1.28238 1.41042 1.19701 0.86311 1.13741 1.22955 0.87936 1.25250 0.99868 0.95706 0.97174 1.69610 1.32371 1.17441 1.35094 0.85858 0.80807 0.78933 0.78703 1.20453 1.20935 1.19401 1.24367 0.91065 0.99304 0.98673 1.84249 1.28062 1.21782 1.71060 1.22697 0.81233 0.97209 1.03068 1.20409 1.02042 0.87071 1.03906 0.91282 0.91491 0.91288 0.82312 0.91829 0.89630 0.90375 0.84590 0.88862 0.91120 0.89193 0.92311 0.77579 0.91927 0.90840 0.88516 0.89587 0.90103 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.17 36.00 0.37 -0.06 16 2 C -0.19 -1.57 6.14 -104.93 -0.64 -2.22 16 3 C -0.11 -1.15 10.58 -39.39 -0.42 -1.57 16 4 C -0.08 -0.85 6.78 -36.80 -0.25 -1.10 16 5 C 0.60 7.95 7.64 -12.86 -0.10 7.85 16 6 O -0.52 -8.29 16.37 5.20 0.09 -8.20 16 7 N -0.59 -7.01 3.11 -175.18 -0.55 -7.55 16 8 C 0.07 0.63 8.47 59.85 0.51 1.13 16 9 C 0.12 1.53 4.56 -67.72 -0.31 1.22 16 10 C -0.02 -0.24 7.23 -7.55 -0.05 -0.29 16 11 N -0.43 -7.27 5.82 -246.10 -1.43 -8.70 16 12 C 0.01 0.20 5.30 -4.98 -0.03 0.17 16 13 C 0.45 10.71 7.85 -10.98 -0.09 10.62 16 14 O -0.57 -16.03 16.01 5.55 0.09 -15.94 16 15 N -0.57 -14.47 5.29 -10.97 -0.06 -14.52 16 16 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 17 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 20 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.00 -0.06 7.11 -7.54 -0.05 -0.12 16 25 O -0.15 -1.49 7.25 5.00 0.04 -1.45 16 26 C 0.01 0.08 7.31 -35.41 -0.26 -0.18 16 27 C -0.08 -0.30 10.21 36.01 0.37 0.06 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.24 7.13 -51.93 -0.37 -0.13 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.72 5.31 -51.93 -0.28 0.45 16 34 H 0.08 0.65 5.97 -51.93 -0.31 0.34 16 35 H 0.14 1.97 7.26 -51.93 -0.38 1.59 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 0.78 6.82 -51.93 -0.35 0.43 16 38 H 0.09 1.43 8.08 -51.93 -0.42 1.02 16 39 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 40 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.07 0.95 5.71 -51.93 -0.30 0.66 16 43 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.09 0.21 7.13 -51.92 -0.37 -0.16 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -34.74 381.42 -7.94 -42.68 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.37 Total: 8.15 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.20 Total: 7.49 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -1.31 Total: -54.67 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.21 Total: -25.60 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.74 -7.94 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699709490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.167 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds