Wall clock time and date at job start Tue Mar 31 2020 19:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40371 * 126.44360 * 2 1 4 4 C 1.36546 * 106.70801 * 179.97438 * 3 2 1 5 5 C 1.46653 * 125.98696 * 179.97438 * 4 3 2 6 6 O 1.21690 * 120.00034 * 6.00313 * 5 4 3 7 7 N 1.34777 * 120.00200 * 185.99414 * 5 4 3 8 8 C 1.46499 * 119.99613 * 356.13624 * 7 5 4 9 9 C 1.46498 * 120.00345 * 176.12641 * 7 5 4 10 10 C 1.53503 * 114.17295 * 240.00671 * 9 7 5 11 11 N 1.47486 * 87.93296 * 220.33078 * 10 9 7 12 12 C 1.46896 * 111.00144 * 138.70435 * 11 10 9 13 13 C 1.50701 * 109.46959 * 170.00096 * 12 11 10 14 14 O 1.21286 * 119.99949 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00060 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00289 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99769 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00085 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00372 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00015 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47212 * 89.99838 * 20 18 16 22 22 H 1.48503 * 109.47016 * 209.99714 * 20 18 16 23 23 H 1.48499 * 109.46923 * 329.99726 * 20 18 16 24 24 C 1.47479 * 87.83439 * 27.01075 * 11 10 9 25 25 O 1.34915 * 108.02260 * 0.23822 * 4 3 2 26 26 C 1.33928 * 109.38638 * 359.59818 * 25 4 3 27 27 C 1.50701 * 125.61510 * 180.19329 * 26 25 4 28 28 H 1.08998 * 109.46991 * 89.98116 * 1 2 3 29 29 H 1.09003 * 109.47373 * 209.98184 * 1 2 3 30 30 H 1.09005 * 109.47357 * 329.97746 * 1 2 3 31 31 H 1.07998 * 126.64552 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.47324 * 275.69712 * 8 7 5 33 33 H 1.09001 * 109.47608 * 35.70257 * 8 7 5 34 34 H 1.09004 * 109.47171 * 155.69873 * 8 7 5 35 35 H 1.09000 * 113.25327 * 12.96107 * 9 7 5 36 36 H 1.09006 * 113.47836 * 105.56352 * 10 9 7 37 37 H 1.09004 * 113.47952 * 335.09172 * 10 9 7 38 38 H 1.09005 * 109.47190 * 49.99979 * 12 11 10 39 39 H 1.08998 * 109.47461 * 290.00080 * 12 11 10 40 40 H 0.97008 * 119.99956 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00304 * 180.02562 * 19 18 16 42 42 H 1.08995 * 113.47543 * 87.75516 * 24 11 10 43 43 H 1.08999 * 113.47744 * 218.22466 * 24 11 10 44 44 H 1.08995 * 109.47505 * 270.24495 * 27 26 25 45 45 H 1.08996 * 109.47473 * 30.25400 * 27 26 25 46 46 H 1.09010 * 109.47001 * 150.24403 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6261 0.6681 0.0006 5 6 4.8379 1.4941 0.0003 6 8 4.7503 2.7029 0.1096 7 7 6.0485 0.9143 -0.1210 8 6 6.1602 -0.5457 -0.1672 9 6 7.2528 1.7441 -0.2067 10 6 8.0568 1.5534 -1.5003 11 7 9.2839 1.6279 -0.6856 12 6 10.2693 0.6313 -1.1255 13 6 11.5880 0.8944 -0.4452 14 8 11.6964 1.8213 0.3295 15 7 12.6469 0.0998 -0.6977 16 6 13.8465 0.3388 -0.0784 17 1 13.9430 1.1642 0.6114 18 6 14.9382 -0.4801 -0.3391 19 7 14.8210 -1.4841 -1.1788 20 14 16.5729 -0.1540 0.5042 21 1 16.6289 -0.9064 1.7832 22 1 17.6822 -0.5956 -0.3788 23 1 16.7071 1.2993 0.7785 24 6 8.4926 1.1225 0.4517 25 8 3.5857 -0.6804 -0.0044 26 6 2.3097 -1.0870 0.0007 27 6 1.8455 -2.5208 0.0018 28 1 -0.3633 0.0003 -1.0276 29 1 -0.3634 -0.8902 0.5136 30 1 -0.3634 0.8898 0.5142 31 1 2.0267 2.1625 0.0004 32 1 6.1763 -0.9412 0.8483 33 1 5.3063 -0.9586 -0.7045 34 1 7.0810 -0.8236 -0.6801 35 1 7.0772 2.7863 0.0602 36 1 7.9513 2.3800 -2.2031 37 1 7.9041 0.5803 -1.9672 38 1 10.3977 0.6996 -2.2058 39 1 9.9183 -0.3669 -0.8638 40 1 12.5603 -0.6413 -1.3176 41 1 15.5830 -2.0560 -1.3605 42 1 8.4560 0.0345 0.5057 43 1 8.7562 1.5839 1.4033 44 1 1.7334 -2.8672 -1.0256 45 1 2.5802 -3.1403 0.5160 46 1 0.8869 -2.5920 0.5158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699709490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:48 Heat of formation + Delta-G solvation = -30.590080 kcal Electronic energy + Delta-G solvation = -28273.815001 eV Core-core repulsion = 24166.034782 eV Total energy + Delta-G solvation = -4107.780219 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.82371 -41.94287 -40.31224 -39.47433 -36.45897 -35.91460 -35.27284 -33.31218 -33.01321 -31.51726 -29.60368 -28.25686 -27.94885 -27.06901 -26.87744 -25.19885 -23.18723 -22.12377 -21.16554 -20.71981 -20.29269 -19.88273 -18.43198 -18.07008 -17.80771 -17.71801 -16.90593 -16.71473 -16.55284 -16.06726 -15.97554 -15.71967 -15.42934 -14.86626 -14.60647 -14.31807 -14.30983 -14.09900 -14.05641 -13.89760 -13.74090 -13.64739 -13.60254 -13.50859 -13.16186 -13.04915 -12.85319 -12.76975 -12.42821 -12.42241 -12.15292 -12.06761 -11.96382 -11.50645 -11.49308 -10.75825 -10.41596 -10.01372 -9.90537 -9.83538 -9.35167 -8.47103 -5.95578 -0.06060 1.25487 1.37221 1.39904 1.41371 1.53792 1.88615 1.97977 2.05226 2.28721 2.81590 3.18568 3.28028 3.31667 3.45482 3.64528 3.79008 3.83288 4.00010 4.06896 4.19301 4.24148 4.27664 4.32726 4.44877 4.50257 4.51746 4.62350 4.68135 4.70092 4.71611 4.75070 4.86783 4.87766 4.90959 5.07183 5.09485 5.14389 5.24660 5.27673 5.40756 5.57566 5.82118 5.85259 6.04192 6.14031 6.60720 6.79548 7.13144 7.56242 8.13271 8.70233 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.001928 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.005642 B =14520.191995 C =15184.920029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.205 4.205 3 C -0.118 4.118 4 C -0.103 4.103 5 C 0.600 3.400 6 O -0.560 6.560 7 N -0.591 5.591 8 C 0.066 3.934 9 C 0.126 3.874 10 C -0.004 4.004 11 N -0.470 5.470 12 C 0.025 3.975 13 C 0.441 3.559 14 O -0.620 6.620 15 N -0.574 5.574 16 C -0.334 4.334 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.991 3.009 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.276 1.276 24 C -0.002 4.002 25 O -0.157 6.157 26 C 0.018 3.982 27 C -0.078 4.078 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.525 -7.883 -1.930 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.206 4.206 3 C -0.139 4.139 4 C -0.154 4.154 5 C 0.390 3.610 6 O -0.441 6.441 7 N -0.321 5.321 8 C -0.075 4.075 9 C 0.021 3.979 10 C -0.134 4.134 11 N -0.192 5.192 12 C -0.106 4.106 13 C 0.228 3.772 14 O -0.506 6.506 15 N -0.212 5.212 16 C -0.463 4.463 17 H 0.094 0.906 18 C -0.211 4.211 19 N -0.560 5.560 20 Si 0.815 3.185 21 H -0.196 1.196 22 H -0.194 1.194 23 H -0.201 1.201 24 C -0.132 4.132 25 O -0.054 6.054 26 C -0.034 4.034 27 C -0.134 4.134 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.174 0.826 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -29.642 -6.372 -1.390 30.351 hybrid contribution 0.844 -0.523 0.056 0.994 sum -28.798 -6.895 -1.334 29.642 Atomic orbital electron populations 1.20285 0.86494 1.03833 1.03147 1.20568 0.99008 0.90978 1.10069 1.22055 0.90824 1.01241 0.99749 1.21548 0.95397 0.81123 1.17374 1.16931 0.81870 0.86015 0.76207 1.90850 1.86283 1.14384 1.52567 1.47735 1.04925 1.08566 1.70884 1.22243 1.04670 0.76950 1.03619 1.22562 0.81804 0.96337 0.97163 1.24401 0.88248 1.03928 0.96777 1.68722 1.05540 1.39751 1.05234 1.22382 0.91116 0.95819 1.01323 1.20779 0.86611 0.84153 0.85641 1.90501 1.85341 1.33899 1.40858 1.41918 1.09218 1.28816 1.41233 1.19633 0.88312 1.14175 1.24225 0.90628 1.26000 1.02561 0.95144 0.97443 1.69659 1.33522 1.17563 1.35243 0.84953 0.76994 0.78379 0.78157 1.19568 1.19397 1.20067 1.24378 0.91229 1.00384 0.97206 1.84222 1.29235 1.20734 1.71223 1.23539 0.80380 0.98935 1.00573 1.20659 1.03056 0.84385 1.05331 0.90404 0.89438 0.91314 0.82615 0.91224 0.88675 0.89027 0.86692 0.88538 0.88284 0.86970 0.89151 0.76895 0.91277 0.88682 0.90975 0.87952 0.89315 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.17 71.23 0.72 0.08 16 2 C -0.21 -3.00 6.14 -20.06 -0.12 -3.12 16 3 C -0.12 -2.39 10.58 22.39 0.24 -2.15 16 4 C -0.10 -2.32 6.78 24.07 0.16 -2.16 16 5 C 0.60 16.14 7.64 86.44 0.66 16.80 16 6 O -0.56 -18.89 16.37 -4.32 -0.07 -18.96 16 7 N -0.59 -13.60 3.11 -826.35 -2.57 -16.17 16 8 C 0.07 1.07 8.47 127.77 1.08 2.15 16 9 C 0.13 3.29 4.56 45.44 0.21 3.49 16 10 C 0.00 -0.10 7.23 83.57 0.60 0.50 16 11 N -0.47 -15.48 5.82 -932.53 -5.43 -20.90 16 12 C 0.03 0.85 5.30 85.56 0.45 1.30 16 13 C 0.44 21.33 7.85 87.66 0.69 22.02 16 14 O -0.62 -35.82 16.01 -3.05 -0.05 -35.87 16 15 N -0.57 -29.56 5.29 -306.99 -1.62 -31.18 16 16 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 17 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 18 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 19 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 20 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 C 0.00 -0.07 7.11 83.58 0.59 0.53 16 25 O -0.16 -2.78 7.25 -5.02 -0.04 -2.82 16 26 C 0.02 0.24 7.31 24.97 0.18 0.42 16 27 C -0.08 -0.33 10.21 71.24 0.73 0.40 16 28 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 0.33 7.13 -2.39 -0.02 0.31 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.39 5.31 -2.39 -0.01 1.38 16 34 H 0.09 1.23 5.97 -2.38 -0.01 1.22 16 35 H 0.12 3.52 7.26 -2.39 -0.02 3.50 16 36 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.10 1.85 6.82 -2.39 -0.02 1.83 16 38 H 0.11 3.29 8.08 -2.38 -0.02 3.27 16 39 H 0.09 2.48 7.30 -2.39 -0.02 2.46 16 40 H 0.40 19.10 7.90 -92.70 -0.73 18.37 16 41 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 42 H 0.10 2.29 5.71 -2.39 -0.01 2.27 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 44 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.11 0.06 7.13 -2.38 -0.02 0.04 16 Total: -1.00 -78.10 381.42 0.31 -77.79 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.29 Total: 30.12 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 7.48 Total: 21.74 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -9.34 Total: -117.29 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -0.16 Total: -57.65 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -78.10 0.31 -77.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699709490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.205 kcal (2) G-P(sol) polarization free energy of solvation -78.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds