Wall clock time and date at job start Tue Mar 31 2020 19:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.57995 * 2 1 4 4 C 1.34510 * 106.84397 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41721 * 0.02562 * 4 3 2 6 6 C 1.34299 * 109.47607 * 359.76375 * 5 4 3 7 7 C 1.50707 * 125.78851 * 180.23596 * 6 5 4 8 8 C 1.50697 * 109.47403 * 270.16938 * 7 6 5 9 9 O 1.21285 * 119.99703 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00044 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00178 * 359.97438 * 10 8 7 12 12 C 1.46507 * 119.99762 * 179.97438 * 10 8 7 13 13 C 1.53938 * 113.73035 * 218.76402 * 12 10 8 14 14 N 1.48192 * 86.10131 * 221.96099 * 13 12 10 15 15 C 1.46899 * 111.07318 * 137.52253 * 14 13 12 16 16 C 1.50695 * 109.47079 * 70.56905 * 15 14 13 17 17 O 1.21294 * 120.00013 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99951 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99944 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00293 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00016 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00224 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47089 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46986 * 119.99888 * 23 21 19 26 26 H 1.48503 * 109.47467 * 240.00028 * 23 21 19 27 27 C 1.47963 * 90.80125 * 24.59813 * 14 13 12 28 28 H 1.09002 * 109.47152 * 90.02322 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02422 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02403 * 1 2 3 31 31 H 1.08008 * 126.57889 * 359.97438 * 3 2 1 32 32 H 1.07999 * 125.79237 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47062 * 30.17084 * 7 6 5 34 34 H 1.09006 * 109.46879 * 150.16582 * 7 6 5 35 35 H 1.08993 * 109.47531 * 89.99981 * 11 10 8 36 36 H 1.09001 * 109.46913 * 210.00431 * 11 10 8 37 37 H 1.09004 * 109.46866 * 330.00013 * 11 10 8 38 38 H 1.08997 * 112.94038 * 350.33240 * 12 10 8 39 39 H 1.08998 * 113.75948 * 336.23618 * 13 12 10 40 40 H 1.09002 * 113.76113 * 107.60614 * 13 12 10 41 41 H 1.08999 * 109.46795 * 190.56121 * 15 14 13 42 42 H 1.09001 * 109.46911 * 310.56535 * 15 14 13 43 43 H 0.97001 * 120.00142 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00442 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.76319 * 221.08891 * 27 14 13 46 46 H 1.09005 * 113.75482 * 89.71617 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6616 0.0004 6 6 2.3087 -1.0801 0.0049 7 6 1.8522 -2.5164 0.0112 8 6 1.7007 -3.0016 -1.4075 9 8 1.9394 -2.2546 -2.3326 10 7 1.2990 -4.2654 -1.6481 11 6 1.0102 -5.1676 -0.5306 12 6 1.1513 -4.7369 -3.0273 13 6 -0.0662 -5.6544 -3.2413 14 7 0.8321 -6.4817 -4.0807 15 6 0.6339 -7.9127 -3.8149 16 6 -0.7030 -8.3444 -4.3603 17 8 -1.4203 -7.5391 -4.9154 18 7 -1.1020 -9.6252 -4.2304 19 6 -2.3184 -10.0178 -4.7261 20 1 -2.9571 -9.3008 -5.2203 21 6 -2.7296 -11.3384 -4.5926 22 7 -1.9527 -12.2109 -3.9908 23 14 -4.3873 -11.8733 -5.2674 24 1 -5.0653 -10.7101 -5.8940 25 1 -4.1878 -12.9365 -6.2848 26 1 -5.2263 -12.3985 -4.1604 27 6 2.0159 -5.9670 -3.3576 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 2.0367 2.1691 -0.0004 32 1 4.5060 1.2924 0.0011 33 1 2.5901 -3.1298 0.5282 34 1 0.8937 -2.5907 0.5250 35 1 -0.0407 -5.0798 -0.2550 36 1 1.2233 -6.1943 -0.8282 37 1 1.6332 -4.8999 0.3228 38 1 1.2307 -3.9350 -3.7613 39 1 -0.4036 -6.1551 -2.3338 40 1 -0.8782 -5.1843 -3.7962 41 1 1.4255 -8.4851 -4.2985 42 1 0.6621 -8.0899 -2.7398 43 1 -0.5285 -10.2692 -3.7862 44 1 -2.2399 -13.1327 -3.8973 45 1 2.8645 -5.7462 -4.0051 46 1 2.2887 -6.5593 -2.4841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699720266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:52 Heat of formation + Delta-G solvation = -9.345279 kcal Electronic energy + Delta-G solvation = -28387.536002 eV Core-core repulsion = 24280.677026 eV Total energy + Delta-G solvation = -4106.858976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.82025 -40.74481 -39.14522 -37.69180 -35.13705 -34.50842 -33.91487 -32.41141 -31.31367 -30.10783 -29.00131 -27.25887 -26.57595 -26.03752 -25.29550 -23.58618 -21.75213 -20.87907 -19.67081 -19.30597 -18.97271 -17.96600 -17.60402 -17.21238 -16.58580 -16.26035 -16.00270 -15.86574 -15.32278 -14.81498 -14.56760 -14.37020 -14.09547 -13.87667 -13.68311 -13.45858 -13.33398 -13.12347 -13.00910 -12.87106 -12.73947 -12.56518 -12.53357 -12.29375 -12.07517 -11.78579 -11.69569 -11.53572 -11.13386 -11.01525 -10.62152 -10.36524 -10.25156 -10.09157 -9.80002 -9.54566 -8.83489 -8.73888 -8.56444 -8.28232 -7.99594 -6.44871 -3.85676 1.46911 2.32597 2.35941 2.63476 2.90470 3.14041 3.25011 3.32328 3.85436 3.99668 4.18161 4.23307 4.35209 4.50583 4.60080 4.67354 4.73469 4.82126 4.83038 4.94605 4.95140 5.13811 5.18389 5.22997 5.26721 5.40462 5.43197 5.43691 5.54457 5.61151 5.64022 5.71720 5.76231 5.80263 5.93483 5.96851 6.13776 6.21808 6.30417 6.34781 6.55106 6.93002 7.07311 7.16637 7.52619 7.92541 8.02754 8.57901 9.15021 9.50581 10.02155 10.72892 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028894 B = 0.001930 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.832774 B =14506.507661 C =14788.985697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 C -0.211 4.211 4 C -0.036 4.036 5 O -0.172 6.172 6 C 0.000 4.000 7 C -0.059 4.059 8 C 0.516 3.484 9 O -0.525 6.525 10 N -0.606 5.606 11 C 0.069 3.931 12 C 0.114 3.886 13 C 0.014 3.986 14 N -0.449 5.449 15 C 0.014 3.986 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.013 4.013 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.147 0.853 32 H 0.202 0.798 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.053 0.947 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.094 0.906 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.714 18.901 14.477 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.230 4.230 4 C -0.104 4.104 5 O -0.068 6.068 6 C -0.050 4.050 7 C -0.099 4.099 8 C 0.303 3.697 9 O -0.400 6.400 10 N -0.339 5.339 11 C -0.074 4.074 12 C 0.010 3.990 13 C -0.116 4.116 14 N -0.172 5.172 15 C -0.118 4.118 16 C 0.228 3.772 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.143 4.143 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.219 0.781 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.112 0.888 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.517 19.462 12.914 25.616 hybrid contribution -0.424 -1.011 0.890 1.412 sum 10.093 18.451 13.805 25.157 Atomic orbital electron populations 1.20203 0.89249 1.02256 1.02418 1.20173 0.97078 0.92039 1.07167 1.21680 0.92617 0.99742 1.08947 1.23942 0.99736 0.80516 1.06201 1.83977 1.28570 1.22852 1.71374 1.21230 0.81268 0.94925 1.07563 1.20125 1.04040 0.89664 0.96050 1.20399 0.76871 0.81482 0.90916 1.90746 1.49042 1.54469 1.45770 1.47906 1.67114 1.11720 1.07188 1.21892 1.01627 0.95038 0.88848 1.23268 0.96367 0.96502 0.82860 1.24292 0.96726 0.93924 0.96631 1.68400 1.02340 1.03000 1.43427 1.22442 0.98965 0.91155 0.99277 1.19665 0.88032 0.83614 0.85888 1.90533 1.56131 1.52324 1.47149 1.41874 1.18562 1.07969 1.51711 1.19749 0.94451 0.94567 1.33984 0.87861 1.25266 0.99741 0.95620 0.97361 1.69618 1.37489 1.04178 1.43050 0.85800 0.81364 0.78733 0.78457 1.19206 1.20722 1.20768 1.24506 0.96528 0.95456 0.97845 0.91145 0.91534 0.91860 0.83531 0.78125 0.87089 0.85981 0.91749 0.90571 0.90687 0.85356 0.91044 0.88130 0.88976 0.92934 0.77517 0.91917 0.88792 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.18 36.01 0.37 -0.35 16 2 C -0.16 -1.72 6.16 -104.74 -0.65 -2.36 16 3 C -0.21 -1.99 10.87 -39.70 -0.43 -2.43 16 4 C -0.04 -0.33 12.09 29.41 0.36 0.03 16 5 O -0.17 -1.96 10.65 5.72 0.06 -1.90 16 6 C 0.00 0.01 5.81 -35.62 -0.21 -0.20 16 7 C -0.06 -0.49 4.58 -29.03 -0.13 -0.63 16 8 C 0.52 6.05 7.67 -10.99 -0.08 5.96 16 9 O -0.52 -8.44 15.51 5.55 0.09 -8.36 16 10 N -0.61 -6.38 3.09 -175.27 -0.54 -6.92 16 11 C 0.07 0.49 8.83 59.85 0.53 1.02 16 12 C 0.11 1.47 4.39 -69.61 -0.31 1.17 16 13 C 0.01 0.21 6.22 -2.63 -0.02 0.19 16 14 N -0.45 -7.40 5.95 -239.65 -1.42 -8.82 16 15 C 0.01 0.24 5.31 -4.98 -0.03 0.21 16 16 C 0.44 10.32 7.59 -10.99 -0.08 10.23 16 17 O -0.58 -15.55 15.13 5.55 0.08 -15.47 16 18 N -0.56 -14.09 5.29 -10.97 -0.06 -14.15 16 19 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 C -0.01 -0.17 7.50 -2.75 -0.02 -0.19 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 7.14 -51.93 -0.37 0.07 16 31 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.11 0.66 7.40 -51.93 -0.38 0.28 16 34 H 0.12 0.70 7.10 -51.93 -0.37 0.33 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.56 6.35 -51.93 -0.33 0.23 16 37 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 38 H 0.13 1.90 7.22 -51.93 -0.37 1.53 16 39 H 0.07 1.01 6.48 -51.93 -0.34 0.68 16 40 H 0.10 1.74 8.10 -51.93 -0.42 1.32 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 43 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 44 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.07 0.76 6.49 -51.93 -0.34 0.42 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -35.65 382.53 -7.72 -43.37 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.45 Total: 9.37 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.94 Total: 4.77 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -1.30 Total: -53.41 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.23 Total: -25.73 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.65 -7.72 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699720266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.021 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds