Wall clock time and date at job start Tue Mar 31 2020 19:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41382 * 126.57995 * 2 1 4 4 C 1.34510 * 106.84397 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41721 * 0.02562 * 4 3 2 6 6 C 1.34299 * 109.47607 * 359.76375 * 5 4 3 7 7 C 1.50707 * 125.78851 * 180.23596 * 6 5 4 8 8 C 1.50697 * 109.47403 * 270.16938 * 7 6 5 9 9 O 1.21285 * 119.99703 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00044 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00178 * 359.97438 * 10 8 7 12 12 C 1.46507 * 119.99762 * 179.97438 * 10 8 7 13 13 C 1.53938 * 113.73035 * 218.76402 * 12 10 8 14 14 N 1.48192 * 86.10131 * 221.96099 * 13 12 10 15 15 C 1.46899 * 111.07318 * 137.52253 * 14 13 12 16 16 C 1.50695 * 109.47079 * 70.56905 * 15 14 13 17 17 O 1.21294 * 120.00013 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99951 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99944 * 179.97438 * 18 16 15 20 20 H 1.07993 * 120.00293 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00016 * 179.97438 * 19 18 16 22 22 N 1.31417 * 120.00283 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00224 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47089 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46986 * 119.99888 * 23 21 19 26 26 H 1.48503 * 109.47467 * 240.00028 * 23 21 19 27 27 C 1.47963 * 90.80125 * 24.59813 * 14 13 12 28 28 H 1.09002 * 109.47152 * 90.02322 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02422 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02403 * 1 2 3 31 31 H 1.08008 * 126.57889 * 359.97438 * 3 2 1 32 32 H 1.07999 * 125.79237 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47062 * 30.17084 * 7 6 5 34 34 H 1.09006 * 109.46879 * 150.16582 * 7 6 5 35 35 H 1.08993 * 109.47531 * 89.99981 * 11 10 8 36 36 H 1.09001 * 109.46913 * 210.00431 * 11 10 8 37 37 H 1.09004 * 109.46866 * 330.00013 * 11 10 8 38 38 H 1.08997 * 112.94038 * 350.33240 * 12 10 8 39 39 H 1.08998 * 113.75948 * 336.23618 * 13 12 10 40 40 H 1.09002 * 113.76113 * 107.60614 * 13 12 10 41 41 H 1.08999 * 109.46795 * 190.56121 * 15 14 13 42 42 H 1.09001 * 109.46911 * 310.56535 * 15 14 13 43 43 H 0.97001 * 120.00142 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00442 * 179.97438 * 22 21 19 45 45 H 1.08999 * 113.76319 * 221.08891 * 27 14 13 46 46 H 1.09005 * 113.75482 * 89.71617 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6616 0.0004 6 6 2.3087 -1.0801 0.0049 7 6 1.8522 -2.5164 0.0112 8 6 1.7007 -3.0016 -1.4075 9 8 1.9394 -2.2546 -2.3326 10 7 1.2990 -4.2654 -1.6481 11 6 1.0102 -5.1676 -0.5306 12 6 1.1513 -4.7369 -3.0273 13 6 -0.0662 -5.6544 -3.2413 14 7 0.8321 -6.4817 -4.0807 15 6 0.6339 -7.9127 -3.8149 16 6 -0.7030 -8.3444 -4.3603 17 8 -1.4203 -7.5391 -4.9154 18 7 -1.1020 -9.6252 -4.2304 19 6 -2.3184 -10.0178 -4.7261 20 1 -2.9571 -9.3008 -5.2203 21 6 -2.7296 -11.3384 -4.5926 22 7 -1.9527 -12.2109 -3.9908 23 14 -4.3873 -11.8733 -5.2674 24 1 -5.0653 -10.7101 -5.8940 25 1 -4.1878 -12.9365 -6.2848 26 1 -5.2263 -12.3985 -4.1604 27 6 2.0159 -5.9670 -3.3576 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 2.0367 2.1691 -0.0004 32 1 4.5060 1.2924 0.0011 33 1 2.5901 -3.1298 0.5282 34 1 0.8937 -2.5907 0.5250 35 1 -0.0407 -5.0798 -0.2550 36 1 1.2233 -6.1943 -0.8282 37 1 1.6332 -4.8999 0.3228 38 1 1.2307 -3.9350 -3.7613 39 1 -0.4036 -6.1551 -2.3338 40 1 -0.8782 -5.1843 -3.7962 41 1 1.4255 -8.4851 -4.2985 42 1 0.6621 -8.0899 -2.7398 43 1 -0.5285 -10.2692 -3.7862 44 1 -2.2399 -13.1327 -3.8973 45 1 2.8645 -5.7462 -4.0051 46 1 2.2887 -6.5593 -2.4841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699720266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:51 Heat of formation + Delta-G solvation = -36.642441 kcal Electronic energy + Delta-G solvation = -28388.719696 eV Core-core repulsion = 24280.677026 eV Total energy + Delta-G solvation = -4108.042670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.52654 -41.81724 -40.37383 -39.34901 -36.17718 -35.83284 -35.21867 -33.33989 -33.11077 -31.35364 -29.74842 -28.04087 -27.55390 -27.12895 -26.80619 -24.97848 -22.49211 -21.86183 -20.98740 -20.49580 -19.99129 -19.81787 -18.52721 -17.96949 -17.84832 -17.50732 -16.99987 -16.75715 -16.56140 -16.44013 -15.84713 -15.61146 -15.41795 -15.13107 -14.82342 -14.46879 -14.14711 -14.02925 -13.93608 -13.67330 -13.64932 -13.52859 -13.50804 -13.36862 -13.19481 -13.17275 -12.93319 -12.84868 -12.41602 -12.34471 -12.14735 -12.12778 -11.80941 -11.51304 -11.04123 -10.51179 -10.35017 -10.01925 -9.77134 -9.72144 -9.27520 -8.47429 -5.95758 0.74457 1.35792 1.41665 1.49944 1.55309 1.60849 1.88572 2.04084 2.19213 2.29008 2.82943 3.19103 3.24117 3.45114 3.54768 3.70904 3.77257 3.99084 4.06417 4.09989 4.17822 4.23243 4.24401 4.35818 4.40272 4.42589 4.52502 4.60297 4.64448 4.72775 4.79073 4.79719 4.87453 4.92604 4.96942 5.00048 5.15765 5.31301 5.32331 5.39647 5.41943 5.67398 5.85374 6.04824 6.22248 6.30779 6.59763 7.06805 7.12636 7.55471 8.11600 8.70031 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028894 B = 0.001930 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.832774 B =14506.507661 C =14788.985697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.183 4.183 3 C -0.229 4.229 4 C -0.039 4.039 5 O -0.191 6.191 6 C -0.023 4.023 7 C -0.052 4.052 8 C 0.513 3.487 9 O -0.579 6.579 10 N -0.600 5.600 11 C 0.058 3.942 12 C 0.125 3.875 13 C 0.015 3.985 14 N -0.482 5.482 15 C 0.027 3.973 16 C 0.440 3.560 17 O -0.620 6.620 18 N -0.572 5.572 19 C -0.331 4.331 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.276 1.276 25 H -0.272 1.272 26 H -0.269 1.269 27 C 0.002 3.998 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.235 0.765 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.099 0.901 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.598 18.284 16.718 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.184 4.184 3 C -0.248 4.248 4 C -0.106 4.106 5 O -0.088 6.088 6 C -0.072 4.072 7 C -0.090 4.090 8 C 0.302 3.698 9 O -0.458 6.458 10 N -0.333 5.333 11 C -0.083 4.083 12 C 0.020 3.980 13 C -0.115 4.115 14 N -0.205 5.205 15 C -0.104 4.104 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.194 1.194 27 C -0.127 4.127 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.181 0.819 32 H 0.252 0.748 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.104 0.896 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.419 18.811 15.200 26.745 hybrid contribution -0.680 -0.742 0.183 1.023 sum 10.739 18.069 15.384 26.048 Atomic orbital electron populations 1.20236 0.88276 1.03736 1.01786 1.20597 0.98132 0.92605 1.07076 1.22041 0.92933 1.00534 1.09331 1.24686 1.01009 0.80048 1.04886 1.83963 1.29101 1.23965 1.71751 1.21710 0.81217 0.96188 1.08131 1.20244 1.06291 0.88725 0.93786 1.21035 0.75715 0.81124 0.91888 1.90724 1.51511 1.55918 1.47647 1.47934 1.66354 1.12046 1.06928 1.22230 1.03056 0.94443 0.88559 1.22828 0.95307 0.95726 0.84167 1.24204 0.96450 0.94425 0.96373 1.68363 1.04392 1.02503 1.45240 1.22340 0.95211 0.91946 1.00951 1.20749 0.89667 0.82513 0.84372 1.90509 1.58092 1.53307 1.48732 1.41923 1.18097 1.08835 1.52137 1.19657 0.95797 0.94914 1.35746 0.90560 1.26000 1.02894 0.95117 0.97161 1.69667 1.38678 1.04558 1.43049 0.84901 0.77394 0.78012 0.78211 1.20029 1.19720 1.19406 1.24512 0.95123 0.94590 0.98457 0.92716 0.90223 0.90315 0.81885 0.74844 0.84174 0.83151 0.90930 0.90246 0.87210 0.87991 0.89768 0.91582 0.87207 0.89591 0.76896 0.91281 0.88276 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.18 71.24 0.73 -0.63 16 2 C -0.18 -3.72 6.16 -19.94 -0.12 -3.84 16 3 C -0.23 -4.17 10.87 22.19 0.24 -3.93 16 4 C -0.04 -0.67 12.09 66.97 0.81 0.14 16 5 O -0.19 -4.19 10.65 -2.46 -0.03 -4.22 16 6 C -0.02 -0.47 5.81 24.83 0.14 -0.32 16 7 C -0.05 -0.73 4.58 29.10 0.13 -0.60 16 8 C 0.51 11.46 7.67 87.66 0.67 12.14 16 9 O -0.58 -19.01 15.51 -3.04 -0.05 -19.05 16 10 N -0.60 -11.58 3.09 -826.81 -2.56 -14.14 16 11 C 0.06 0.62 8.83 127.77 1.13 1.75 16 12 C 0.12 3.18 4.39 46.56 0.20 3.38 16 13 C 0.02 0.46 6.22 86.37 0.54 0.99 16 14 N -0.48 -15.50 5.95 -912.13 -5.42 -20.93 16 15 C 0.03 0.89 5.31 85.56 0.45 1.35 16 16 C 0.44 20.61 7.59 87.66 0.67 21.28 16 17 O -0.62 -34.47 15.13 -3.07 -0.05 -34.52 16 18 N -0.57 -28.81 5.29 -307.00 -1.62 -30.43 16 19 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.92 -48.64 13.05 21.66 0.28 -48.36 16 23 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 27 C 0.00 0.05 7.50 86.41 0.65 0.70 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.97 7.14 -2.38 -0.02 0.95 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.24 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.14 1.15 7.40 -2.39 -0.02 1.13 16 34 H 0.15 1.22 7.10 -2.38 -0.02 1.20 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.84 6.35 -2.39 -0.02 0.82 16 37 H 0.11 0.44 6.44 -2.38 -0.02 0.42 16 38 H 0.10 3.17 7.22 -2.39 -0.02 3.15 16 39 H 0.08 2.29 6.48 -2.39 -0.02 2.28 16 40 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 41 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 42 H 0.09 2.27 7.70 -2.39 -0.02 2.25 16 43 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 44 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 45 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.10 1.74 6.49 -2.38 -0.02 1.73 16 Total: -1.00 -81.05 382.53 0.39 -80.66 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.29 Total: 31.96 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 7.52 Total: 14.40 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -9.32 Total: -113.86 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -0.12 Total: -57.79 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -81.05 0.39 -80.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699720266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.013 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds