Wall clock time and date at job start Tue Mar 31 2020 19:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34859 * 119.10263 * 2 1 4 4 C 1.41671 * 119.34061 * 179.77803 * 3 2 1 5 5 O 1.22082 * 121.06721 * 180.21254 * 4 3 2 6 6 C 1.47096 * 117.86157 * 0.41623 * 4 3 2 7 7 C 1.47284 * 120.88119 * 179.81792 * 6 4 3 8 8 O 1.21619 * 120.00439 * 321.89348 * 7 6 4 9 9 N 1.34784 * 120.00137 * 141.89395 * 7 6 4 10 10 C 1.46928 * 120.62756 * 354.77016 * 9 7 6 11 11 C 1.53190 * 108.88782 * 233.51333 * 10 9 7 12 12 C 1.53070 * 109.29896 * 305.57741 * 11 10 9 13 13 C 1.53045 * 109.65734 * 61.15419 * 12 11 10 14 14 C 1.52998 * 109.49668 * 178.74922 * 13 12 11 15 15 O 1.42902 * 109.46835 * 184.83626 * 14 13 12 16 16 N 1.46499 * 109.52388 * 58.67012 * 13 12 11 17 17 C 1.36933 * 120.00171 * 180.14838 * 16 13 12 18 18 H 1.07999 * 119.99799 * 359.97438 * 17 16 13 19 19 C 1.38813 * 120.00446 * 179.97438 * 17 16 13 20 20 N 1.31618 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00130 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47238 * 89.99982 * 21 19 17 23 23 H 1.48501 * 109.47117 * 210.00032 * 21 19 17 24 24 H 1.48499 * 109.47539 * 330.00040 * 21 19 17 25 25 C 1.46921 * 120.63077 * 174.74319 * 9 7 6 26 26 C 1.37996 * 118.23786 * 359.54571 * 6 4 3 27 27 N 1.34344 * 120.37007 * 0.27361 * 26 6 4 28 28 H 0.96997 * 118.80419 * 179.97438 * 27 26 6 29 29 H 1.08996 * 109.47289 * 270.02476 * 1 2 3 30 30 H 1.08995 * 109.46910 * 30.02762 * 1 2 3 31 31 H 1.09005 * 109.47086 * 150.02179 * 1 2 3 32 32 H 1.07997 * 120.32594 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.58537 * 353.37182 * 10 9 7 34 34 H 1.08998 * 109.58623 * 113.65543 * 10 9 7 35 35 H 1.09001 * 109.49717 * 65.38954 * 11 10 9 36 36 H 1.08998 * 109.49515 * 185.48344 * 11 10 9 37 37 H 1.08996 * 109.34597 * 301.13321 * 12 11 10 38 38 H 1.08994 * 109.45371 * 181.24440 * 12 11 10 39 39 H 1.08999 * 109.47170 * 304.83863 * 14 13 12 40 40 H 1.09007 * 109.47205 * 64.84227 * 14 13 12 41 41 H 0.96700 * 113.99844 * 180.02562 * 15 14 13 42 42 H 0.96998 * 119.99821 * 0.14418 * 16 13 12 43 43 H 0.97001 * 120.00302 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58734 * 246.20202 * 25 9 7 45 45 H 1.09000 * 109.58611 * 6.48562 * 25 9 7 46 46 H 1.08003 * 119.81560 * 180.24797 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5797 1.1842 0.0048 5 8 4.2053 2.2325 0.0088 6 6 4.2725 -0.1133 0.0001 7 6 5.7436 -0.1848 0.0007 8 8 6.3917 0.6160 -0.6458 9 7 6.3718 -1.1377 0.7176 10 6 5.6108 -2.0396 1.5930 11 6 6.2132 -1.9897 3.0005 12 6 7.7100 -2.3005 2.9216 13 6 8.4091 -1.2496 2.0561 14 6 9.9092 -1.5459 2.0051 15 8 10.5767 -0.5032 1.2914 16 7 8.1926 0.0805 2.6306 17 6 8.7258 1.1847 2.0210 18 1 9.3062 1.0749 1.1169 19 6 8.5203 2.4451 2.5650 20 7 7.8133 2.5789 3.6671 21 14 9.2482 3.9512 1.7338 22 1 8.2770 4.4908 0.7484 23 1 9.5431 4.9870 2.7563 24 1 10.5033 3.5734 1.0357 25 6 7.8305 -1.2946 0.6383 26 6 3.5076 -1.2619 0.0010 27 7 2.1664 -1.1848 0.0005 28 1 1.6510 -2.0065 0.0008 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6137 2.1082 -0.0004 33 1 4.5693 -1.7203 1.6297 34 1 5.6676 -3.0573 1.2070 35 1 6.0721 -0.9942 3.4216 36 1 5.7193 -2.7265 3.6339 37 1 7.8510 -3.2869 2.4798 38 1 8.1368 -2.2875 3.9243 39 1 10.3032 -1.6016 3.0198 40 1 10.0748 -2.4966 1.4982 41 1 11.5332 -0.6257 1.2194 42 1 7.6716 0.1791 3.4428 43 1 7.6694 3.4596 4.0472 44 1 8.0704 -2.2520 0.1759 45 1 8.2532 -0.4852 0.0431 46 1 3.9899 -2.2283 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700240663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:01 Heat of formation + Delta-G solvation = -47.018284 kcal Electronic energy + Delta-G solvation = -31101.644006 eV Core-core repulsion = 26993.151406 eV Total energy + Delta-G solvation = -4108.492600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.00670 -39.45033 -37.73625 -37.07696 -35.58767 -33.95089 -33.16827 -32.08616 -31.20831 -30.85006 -28.64091 -28.08276 -25.39298 -25.26517 -23.64278 -23.27041 -22.10967 -21.60256 -20.37992 -18.54379 -17.77559 -17.53675 -17.08680 -16.38820 -16.07267 -15.69177 -15.54569 -15.09088 -14.77072 -14.34038 -14.28184 -14.00750 -13.65816 -13.41038 -13.26439 -13.21969 -13.14674 -13.00158 -12.74372 -12.63530 -12.51745 -12.28533 -12.04867 -11.91815 -11.49096 -11.09162 -10.71902 -10.52214 -10.47205 -10.33934 -10.04036 -9.55799 -9.47073 -9.35057 -9.29023 -8.84095 -8.82403 -8.59748 -7.95881 -7.82330 -6.60950 -5.36360 -2.60817 1.03414 1.37957 2.62928 3.35628 3.63185 3.75897 3.83684 3.89471 4.09116 4.18528 4.45715 4.64934 4.83275 4.89347 4.98896 5.02208 5.05217 5.12839 5.27814 5.31439 5.41535 5.47314 5.54991 5.64106 5.72369 5.76882 5.82525 5.90193 5.94667 6.05028 6.08755 6.18458 6.26267 6.33722 6.41470 6.47854 6.70070 6.73214 6.80118 6.88677 7.03456 7.27491 8.11184 8.36280 8.45004 8.50617 8.81222 9.02761 9.95533 10.41661 10.76622 11.87832 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012055 B = 0.004988 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.147389 B = 5611.956578 C = 6984.485601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.148 3.852 3 C -0.267 4.267 4 C 0.403 3.597 5 O -0.468 6.468 6 C -0.273 4.273 7 C 0.578 3.422 8 O -0.500 6.500 9 N -0.596 5.596 10 C 0.101 3.899 11 C -0.132 4.132 12 C -0.114 4.114 13 C 0.188 3.812 14 C 0.075 3.925 15 O -0.534 6.534 16 N -0.700 5.700 17 C -0.193 4.193 18 H 0.091 0.909 19 C -0.020 4.020 20 N -0.947 5.947 21 Si 0.901 3.099 22 H -0.290 1.290 23 H -0.300 1.300 24 H -0.284 1.284 25 C 0.112 3.888 26 C 0.147 3.853 27 N -0.584 5.584 28 H 0.416 0.584 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.350 0.650 42 H 0.380 0.620 43 H 0.247 0.753 44 H 0.043 0.957 45 H 0.103 0.897 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.101 -19.532 -4.770 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.042 3.958 3 C -0.291 4.291 4 C 0.287 3.713 5 O -0.347 6.347 6 C -0.284 4.284 7 C 0.365 3.635 8 O -0.373 6.373 9 N -0.330 5.330 10 C -0.022 4.022 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.094 3.906 14 C -0.006 4.006 15 O -0.336 6.336 16 N -0.340 5.340 17 C -0.324 4.324 18 H 0.108 0.892 19 C -0.213 4.213 20 N -0.598 5.598 21 Si 0.734 3.266 22 H -0.218 1.218 23 H -0.227 1.227 24 H -0.210 1.210 25 C -0.012 4.012 26 C 0.018 3.982 27 N -0.192 5.192 28 H 0.252 0.748 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.167 0.833 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.194 0.806 42 H 0.215 0.785 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.121 0.879 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -14.916 -18.067 -5.286 24.017 hybrid contribution 0.501 0.158 0.167 0.552 sum -14.414 -17.909 -5.119 23.552 Atomic orbital electron populations 1.21055 0.88203 1.04550 1.04152 1.20178 0.94506 0.85625 0.95507 1.22257 0.96357 0.97245 1.13259 1.18207 0.88253 0.88070 0.76790 1.90897 1.69865 1.33221 1.40732 1.22662 0.95161 0.95047 1.15541 1.17335 0.85550 0.80400 0.80228 1.90825 1.66226 1.37476 1.42807 1.47648 1.07699 1.33675 1.43935 1.21934 0.96203 0.92972 0.91125 1.21869 0.95790 1.03330 0.96081 1.21608 0.95368 0.97811 1.00375 1.19935 0.90713 0.87971 0.91982 1.22762 0.95194 0.88303 0.94361 1.87007 1.22055 1.47090 1.77459 1.42373 1.62464 0.99494 1.29681 1.19437 1.22732 0.84324 1.05939 0.89175 1.24607 1.01495 0.97314 0.97919 1.69644 1.46096 1.21789 1.22282 0.86238 0.78608 0.83556 0.78231 1.21807 1.22678 1.21023 1.22109 0.78711 1.00763 0.99650 1.22283 0.82386 1.00014 0.93539 1.40587 1.05769 1.08564 1.64275 0.74786 0.89414 0.88962 0.90747 0.83311 0.90335 0.92264 0.89991 0.91645 0.92138 0.91580 0.94496 0.96029 0.80576 0.78520 0.94332 0.93864 0.87876 0.81139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 10.03 36.01 0.36 -0.14 16 2 C 0.15 1.28 6.79 -82.13 -0.56 0.72 16 3 C -0.27 -3.70 9.57 -39.47 -0.38 -4.08 16 4 C 0.40 8.19 6.94 -34.68 -0.24 7.95 16 5 O -0.47 -12.63 17.01 -6.98 -0.12 -12.75 16 6 C -0.27 -4.86 5.39 -102.72 -0.55 -5.41 16 7 C 0.58 12.79 7.26 -12.58 -0.09 12.70 16 8 O -0.50 -13.99 15.79 -6.57 -0.10 -14.09 16 9 N -0.60 -11.09 2.89 -174.09 -0.50 -11.59 16 10 C 0.10 1.33 4.85 -3.71 -0.02 1.31 16 11 C -0.13 -1.91 5.93 -26.60 -0.16 -2.06 16 12 C -0.11 -1.72 4.76 -26.67 -0.13 -1.85 16 13 C 0.19 3.71 0.68 -131.70 -0.09 3.62 16 14 C 0.08 1.36 6.09 37.16 0.23 1.58 16 15 O -0.53 -10.93 10.05 -35.23 -0.35 -11.28 16 16 N -0.70 -18.09 4.75 -47.12 -0.22 -18.32 16 17 C -0.19 -5.84 8.07 -15.06 -0.12 -5.96 16 18 H 0.09 2.81 5.27 -52.49 -0.28 2.53 16 19 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 20 N -0.95 -31.55 13.06 55.49 0.72 -30.83 16 21 Si 0.90 26.55 29.55 -169.99 -5.02 21.52 16 22 H -0.29 -9.00 7.11 56.52 0.40 -8.59 16 23 H -0.30 -8.69 7.11 56.52 0.40 -8.29 16 24 H -0.28 -8.08 7.11 56.52 0.40 -7.67 16 25 C 0.11 2.23 4.92 -3.71 -0.02 2.21 16 26 C 0.15 1.52 8.57 -16.54 -0.14 1.38 16 27 N -0.58 -4.00 5.16 -8.99 -0.05 -4.04 16 28 H 0.42 0.87 8.70 -40.82 -0.35 0.52 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.36 8.05 -51.93 -0.42 -0.05 16 31 H 0.07 0.13 8.12 -51.93 -0.42 -0.29 16 32 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.08 0.92 4.57 -51.93 -0.24 0.68 16 34 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.08 1.54 6.77 -51.93 -0.35 1.19 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 5.35 9.12 45.56 0.42 5.76 16 42 H 0.38 10.53 6.44 -40.82 -0.26 10.26 16 43 H 0.25 8.13 8.31 -40.82 -0.34 7.79 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 2.56 5.82 -51.93 -0.30 2.26 16 46 H 0.17 1.18 6.30 -52.48 -0.33 0.85 16 LS Contribution 365.52 15.07 5.51 5.51 Total: -1.00 -47.00 365.52 -7.62 -54.62 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.48 Total: 10.03 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -2.00 Total: 11.22 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.05 Total: -64.79 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -0.58 Total: -38.12 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -5.02 Total: 21.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -47.00 -7.62 -54.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700240663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.602 kcal (2) G-P(sol) polarization free energy of solvation -46.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds