Wall clock time and date at job start Tue Mar 31 2020 19:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34859 * 119.10263 * 2 1 4 4 C 1.41671 * 119.34061 * 179.77803 * 3 2 1 5 5 O 1.22082 * 121.06721 * 180.21254 * 4 3 2 6 6 C 1.47096 * 117.86157 * 0.41623 * 4 3 2 7 7 C 1.47284 * 120.88119 * 179.81792 * 6 4 3 8 8 O 1.21619 * 120.00439 * 321.89348 * 7 6 4 9 9 N 1.34784 * 120.00137 * 141.89395 * 7 6 4 10 10 C 1.46928 * 120.62756 * 354.77016 * 9 7 6 11 11 C 1.53190 * 108.88782 * 233.51333 * 10 9 7 12 12 C 1.53070 * 109.29896 * 305.57741 * 11 10 9 13 13 C 1.53045 * 109.65734 * 61.15419 * 12 11 10 14 14 C 1.52998 * 109.49668 * 178.74922 * 13 12 11 15 15 O 1.42902 * 109.46835 * 184.83626 * 14 13 12 16 16 N 1.46499 * 109.52388 * 58.67012 * 13 12 11 17 17 C 1.36933 * 120.00171 * 180.14838 * 16 13 12 18 18 H 1.07999 * 119.99799 * 359.97438 * 17 16 13 19 19 C 1.38813 * 120.00446 * 179.97438 * 17 16 13 20 20 N 1.31618 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00130 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47238 * 89.99982 * 21 19 17 23 23 H 1.48501 * 109.47117 * 210.00032 * 21 19 17 24 24 H 1.48499 * 109.47539 * 330.00040 * 21 19 17 25 25 C 1.46921 * 120.63077 * 174.74319 * 9 7 6 26 26 C 1.37996 * 118.23786 * 359.54571 * 6 4 3 27 27 N 1.34344 * 120.37007 * 0.27361 * 26 6 4 28 28 H 0.96997 * 118.80419 * 179.97438 * 27 26 6 29 29 H 1.08996 * 109.47289 * 270.02476 * 1 2 3 30 30 H 1.08995 * 109.46910 * 30.02762 * 1 2 3 31 31 H 1.09005 * 109.47086 * 150.02179 * 1 2 3 32 32 H 1.07997 * 120.32594 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.58537 * 353.37182 * 10 9 7 34 34 H 1.08998 * 109.58623 * 113.65543 * 10 9 7 35 35 H 1.09001 * 109.49717 * 65.38954 * 11 10 9 36 36 H 1.08998 * 109.49515 * 185.48344 * 11 10 9 37 37 H 1.08996 * 109.34597 * 301.13321 * 12 11 10 38 38 H 1.08994 * 109.45371 * 181.24440 * 12 11 10 39 39 H 1.08999 * 109.47170 * 304.83863 * 14 13 12 40 40 H 1.09007 * 109.47205 * 64.84227 * 14 13 12 41 41 H 0.96700 * 113.99844 * 180.02562 * 15 14 13 42 42 H 0.96998 * 119.99821 * 0.14418 * 16 13 12 43 43 H 0.97001 * 120.00302 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58734 * 246.20202 * 25 9 7 45 45 H 1.09000 * 109.58611 * 6.48562 * 25 9 7 46 46 H 1.08003 * 119.81560 * 180.24797 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5797 1.1842 0.0048 5 8 4.2053 2.2325 0.0088 6 6 4.2725 -0.1133 0.0001 7 6 5.7436 -0.1848 0.0007 8 8 6.3917 0.6160 -0.6458 9 7 6.3718 -1.1377 0.7176 10 6 5.6108 -2.0396 1.5930 11 6 6.2132 -1.9897 3.0005 12 6 7.7100 -2.3005 2.9216 13 6 8.4091 -1.2496 2.0561 14 6 9.9092 -1.5459 2.0051 15 8 10.5767 -0.5032 1.2914 16 7 8.1926 0.0805 2.6306 17 6 8.7258 1.1847 2.0210 18 1 9.3062 1.0749 1.1169 19 6 8.5203 2.4451 2.5650 20 7 7.8133 2.5789 3.6671 21 14 9.2482 3.9512 1.7338 22 1 8.2770 4.4908 0.7484 23 1 9.5431 4.9870 2.7563 24 1 10.5033 3.5734 1.0357 25 6 7.8305 -1.2946 0.6383 26 6 3.5076 -1.2619 0.0010 27 7 2.1664 -1.1848 0.0005 28 1 1.6510 -2.0065 0.0008 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6137 2.1082 -0.0004 33 1 4.5693 -1.7203 1.6297 34 1 5.6676 -3.0573 1.2070 35 1 6.0721 -0.9942 3.4216 36 1 5.7193 -2.7265 3.6339 37 1 7.8510 -3.2869 2.4798 38 1 8.1368 -2.2875 3.9243 39 1 10.3032 -1.6016 3.0198 40 1 10.0748 -2.4966 1.4982 41 1 11.5332 -0.6257 1.2194 42 1 7.6716 0.1791 3.4428 43 1 7.6694 3.4596 4.0472 44 1 8.0704 -2.2520 0.1759 45 1 8.2532 -0.4852 0.0431 46 1 3.9899 -2.2283 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700240663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:00 Heat of formation + Delta-G solvation = -90.456317 kcal Electronic energy + Delta-G solvation = -31103.527621 eV Core-core repulsion = 26993.151406 eV Total energy + Delta-G solvation = -4110.376214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13499 -40.83332 -39.20623 -38.62044 -37.09588 -35.62608 -34.48407 -33.66505 -32.53000 -32.36187 -30.45674 -29.08265 -26.65321 -26.63900 -25.58587 -24.70439 -23.19329 -22.89506 -21.66241 -20.02576 -19.36785 -18.81337 -18.63952 -17.77960 -17.51626 -17.08639 -16.97977 -16.41644 -16.27645 -15.92794 -15.69548 -15.53242 -15.33046 -14.97410 -14.59547 -14.49003 -14.41317 -14.18191 -13.87373 -13.73003 -13.59789 -13.50253 -13.36400 -13.16545 -13.02459 -12.96325 -12.73040 -12.54781 -12.07591 -11.89976 -11.71375 -11.34560 -11.28690 -11.01148 -10.81998 -10.54859 -10.39866 -10.25763 -9.48020 -9.13839 -8.76695 -7.83795 -5.01470 -0.07170 0.35429 1.28139 1.41424 1.43235 1.79251 1.86087 2.30000 2.62622 2.80703 3.39062 3.42107 3.62416 3.67356 3.70717 3.91837 3.95792 3.99939 4.10015 4.20867 4.29485 4.35796 4.47061 4.54272 4.61705 4.64978 4.76838 4.79182 4.80652 4.85168 4.86351 4.95596 5.05902 5.08086 5.20511 5.21667 5.37190 5.52147 5.56855 5.69648 5.84565 5.91689 6.19418 6.43469 6.68008 7.14952 7.19868 7.51356 7.52329 8.23633 8.42003 9.41582 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012055 B = 0.004988 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.147389 B = 5611.956578 C = 6984.485601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.201 3.799 3 C -0.313 4.313 4 C 0.371 3.629 5 O -0.586 6.586 6 C -0.346 4.346 7 C 0.564 3.436 8 O -0.590 6.590 9 N -0.594 5.594 10 C 0.092 3.908 11 C -0.132 4.132 12 C -0.106 4.106 13 C 0.170 3.830 14 C 0.074 3.926 15 O -0.574 6.574 16 N -0.709 5.709 17 C -0.152 4.152 18 H 0.079 0.921 19 C -0.096 4.096 20 N -0.980 5.980 21 Si 0.939 3.061 22 H -0.325 1.325 23 H -0.290 1.290 24 H -0.267 1.267 25 C 0.115 3.885 26 C 0.219 3.781 27 N -0.545 5.545 28 H 0.453 0.547 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.023 0.977 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.372 0.628 42 H 0.368 0.632 43 H 0.236 0.764 44 H 0.092 0.908 45 H 0.039 0.961 46 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.429 -27.299 -4.630 33.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 C -0.337 4.337 4 C 0.265 3.735 5 O -0.475 6.475 6 C -0.356 4.356 7 C 0.354 3.646 8 O -0.470 6.470 9 N -0.325 5.325 10 C -0.029 4.029 11 C -0.170 4.170 12 C -0.144 4.144 13 C 0.079 3.921 14 C -0.006 4.006 15 O -0.380 6.380 16 N -0.347 5.347 17 C -0.285 4.285 18 H 0.096 0.904 19 C -0.285 4.285 20 N -0.636 5.636 21 Si 0.773 3.227 22 H -0.256 1.256 23 H -0.217 1.217 24 H -0.192 1.192 25 C -0.010 4.010 26 C 0.085 3.915 27 N -0.153 5.153 28 H 0.297 0.703 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.042 0.958 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.220 0.780 42 H 0.200 0.800 43 H 0.045 0.955 44 H 0.110 0.890 45 H 0.058 0.942 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -18.286 -26.031 -5.133 32.223 hybrid contribution 1.344 2.163 0.044 2.547 sum -16.942 -23.868 -5.090 29.709 Atomic orbital electron populations 1.21303 0.83339 1.06937 1.06173 1.20741 0.96932 0.84130 0.89096 1.22020 0.93422 1.00012 1.18224 1.19261 0.90941 0.88061 0.75191 1.90828 1.72225 1.36486 1.47985 1.22153 0.93584 0.96535 1.23330 1.18135 0.87428 0.79673 0.79366 1.90757 1.68453 1.40980 1.46783 1.47823 1.07504 1.33572 1.43650 1.22482 0.95989 0.94813 0.89587 1.21887 0.96077 1.01588 0.97429 1.21638 0.95075 0.98164 0.99536 1.20561 0.92708 0.86268 0.92606 1.22757 0.93373 0.89607 0.94858 1.86906 1.24178 1.48983 1.77900 1.42523 1.61786 1.01272 1.29156 1.19555 1.19395 0.85650 1.03894 0.90353 1.25150 1.04242 0.99535 0.99567 1.69739 1.48950 1.21022 1.23849 0.85573 0.77930 0.82124 0.77079 1.25604 1.21706 1.19196 1.21957 0.79688 1.00650 0.98709 1.22738 0.83081 0.99322 0.86371 1.40903 1.05022 1.09906 1.59447 0.70294 0.87159 0.88674 0.86368 0.83599 0.88939 0.85519 0.95807 0.86524 0.86861 0.91789 0.94517 0.91005 0.78042 0.79968 0.95495 0.88972 0.94238 0.75585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.22 10.03 71.24 0.71 0.49 16 2 C 0.20 2.62 6.79 41.20 0.28 2.90 16 3 C -0.31 -9.04 9.57 22.34 0.21 -8.83 16 4 C 0.37 16.74 6.94 25.44 0.18 16.92 16 5 O -0.59 -36.70 17.01 5.72 0.10 -36.60 16 6 C -0.35 -12.60 5.39 -18.63 -0.10 -12.70 16 7 C 0.56 26.45 7.26 86.62 0.63 27.08 16 8 O -0.59 -36.85 15.79 7.22 0.11 -36.73 16 9 N -0.59 -21.51 2.89 -822.94 -2.38 -23.89 16 10 C 0.09 1.93 4.85 86.36 0.42 2.35 16 11 C -0.13 -3.24 5.93 30.68 0.18 -3.06 16 12 C -0.11 -2.74 4.76 30.63 0.15 -2.60 16 13 C 0.17 6.47 0.68 3.68 0.00 6.47 16 14 C 0.07 2.52 6.09 71.98 0.44 2.96 16 15 O -0.57 -23.63 10.05 -148.98 -1.50 -25.12 16 16 N -0.71 -38.14 4.75 -302.99 -1.44 -39.58 16 17 C -0.15 -9.77 8.07 84.03 0.68 -9.09 16 18 H 0.08 5.22 5.27 -2.91 -0.02 5.21 16 19 C -0.10 -6.65 5.50 84.86 0.47 -6.18 16 20 N -0.98 -70.14 13.06 21.65 0.28 -69.86 16 21 Si 0.94 58.89 29.55 68.60 2.03 60.92 16 22 H -0.33 -22.10 7.11 99.48 0.71 -21.40 16 23 H -0.29 -17.52 7.11 99.48 0.71 -16.81 16 24 H -0.27 -15.68 7.11 99.48 0.71 -14.97 16 25 C 0.11 4.46 4.92 86.36 0.42 4.89 16 26 C 0.22 3.43 8.57 84.25 0.72 4.15 16 27 N -0.54 -3.76 5.16 -182.37 -0.94 -4.70 16 28 H 0.45 -2.58 8.70 -92.71 -0.81 -3.38 16 29 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.09 0.31 8.05 -2.39 -0.02 0.29 16 31 H 0.12 -0.65 8.12 -2.38 -0.02 -0.67 16 32 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.09 1.63 4.57 -2.39 -0.01 1.62 16 34 H 0.13 1.12 8.10 -2.39 -0.02 1.11 16 35 H 0.02 0.87 6.77 -2.39 -0.02 0.85 16 36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.37 11.24 9.12 -74.06 -0.68 10.57 16 42 H 0.37 21.43 6.44 -92.71 -0.60 20.83 16 43 H 0.24 16.77 8.31 -92.71 -0.77 16.00 16 44 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.04 2.06 5.82 -2.39 -0.01 2.05 16 46 H 0.23 1.16 6.30 -2.91 -0.02 1.14 16 Total: -1.00 -133.18 365.52 0.63 -132.55 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -1.02 Total: 17.27 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 5.39 Total: 25.74 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -4.48 Total: -138.03 kcal Atomic # 8 Polarization: -97.17 SS G_CDS: -1.29 Total: -98.46 kcal Atomic # 14 Polarization: 58.89 SS G_CDS: 2.03 Total: 60.92 kcal Total: -133.18 0.63 -132.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700240663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.091 kcal (2) G-P(sol) polarization free energy of solvation -133.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -132.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds