Wall clock time and date at job start Tue Mar 31 2020 19:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41380 * 126.80690 * 2 1 4 4 C 1.35444 * 103.98609 * 180.20279 * 3 2 1 5 5 C 1.50699 * 126.77512 * 179.74222 * 4 3 2 6 6 C 1.50701 * 115.55125 * 42.17823 * 5 4 3 7 7 O 1.21280 * 119.99974 * 107.43669 * 6 5 4 8 8 N 1.34773 * 120.00082 * 287.43878 * 6 5 4 9 9 C 1.46498 * 120.00466 * 185.00200 * 8 6 5 10 10 C 1.53001 * 112.94235 * 293.63010 * 9 8 6 11 11 C 1.52995 * 109.47354 * 302.78821 * 10 9 8 12 12 O 1.42896 * 109.47503 * 184.65492 * 11 10 9 13 13 C 1.53948 * 113.74434 * 161.89475 * 9 8 6 14 14 N 1.47578 * 86.11569 * 222.04777 * 13 9 8 15 15 C 1.36938 * 134.49391 * 204.64011 * 14 13 9 16 16 H 1.07998 * 120.00395 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99698 * 0.02562 * 15 14 13 18 18 N 1.31613 * 120.00022 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47542 * 89.99817 * 19 17 15 21 21 H 1.48503 * 109.47133 * 209.99923 * 19 17 15 22 22 H 1.48499 * 109.47068 * 330.00016 * 19 17 15 23 23 C 1.47586 * 91.01651 * 24.64055 * 14 13 9 24 24 C 1.53003 * 117.50024 * 256.46943 * 5 4 3 25 25 C 1.52999 * 117.50115 * 187.84493 * 5 4 3 26 26 O 1.34041 * 106.44858 * 359.64948 * 4 3 2 27 27 N 1.20921 * 111.56395 * 0.37799 * 26 4 3 28 28 H 1.08995 * 109.46999 * 90.00158 * 1 2 3 29 29 H 1.09001 * 109.47228 * 210.00620 * 1 2 3 30 30 H 1.09006 * 109.46677 * 330.00430 * 1 2 3 31 31 H 1.07996 * 128.00052 * 359.94117 * 3 2 1 32 32 H 0.97005 * 119.99795 * 5.00225 * 8 6 5 33 33 H 1.09004 * 109.47087 * 62.78974 * 10 9 8 34 34 H 1.08997 * 109.47050 * 182.78887 * 10 9 8 35 35 H 1.09010 * 109.47105 * 304.65538 * 11 10 9 36 36 H 1.09004 * 109.47199 * 64.65147 * 11 10 9 37 37 H 0.96699 * 114.00127 * 179.97438 * 12 11 10 38 38 H 1.08999 * 113.76657 * 336.35143 * 13 9 8 39 39 H 1.08997 * 113.76770 * 107.75078 * 13 9 8 40 40 H 0.97004 * 120.00017 * 179.97438 * 18 17 15 41 41 H 1.08996 * 113.76869 * 221.05360 * 23 14 13 42 42 H 1.09003 * 113.86950 * 89.67545 * 23 14 13 43 43 H 1.09001 * 117.49849 * 0.02562 * 24 5 4 44 44 H 1.08999 * 117.49994 * 145.01834 * 24 5 4 45 45 H 1.08999 * 117.50628 * 214.97921 * 25 5 4 46 46 H 1.09005 * 117.50107 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0047 5 6 4.9021 1.3693 -0.0121 6 6 4.9570 2.5692 0.8981 7 8 5.6184 2.5299 1.9139 8 7 4.2711 3.6858 0.5833 9 6 4.4104 4.8882 1.4085 10 6 3.8487 4.7109 2.8205 11 6 2.3759 4.3051 2.7364 12 8 1.8223 4.2450 4.0524 13 6 3.9415 6.1773 0.7096 14 7 5.1416 6.8096 1.2910 15 6 5.4859 8.0934 1.6201 16 1 6.4570 8.3001 2.0453 17 6 4.5868 9.1294 1.4073 18 7 3.4036 8.8777 0.8887 19 14 5.0567 10.8809 1.8555 20 1 5.7032 11.5340 0.6890 21 1 3.8373 11.6390 2.2343 22 1 6.0032 10.8620 2.9996 23 6 5.8216 5.5024 1.3754 24 6 5.6661 1.4504 -1.3353 25 6 6.1910 0.5670 -0.2017 26 8 3.4537 -0.7255 0.0008 27 7 2.2867 -1.0424 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 2.0710 2.1742 -0.0009 32 1 3.6851 3.6932 -0.1897 33 1 4.4103 3.9345 3.3402 34 1 3.9361 5.6500 3.3669 35 1 1.8296 5.0405 2.1456 36 1 2.2951 3.3265 2.2631 37 1 0.8889 3.9935 4.0753 38 1 3.9595 6.1185 -0.3786 39 1 3.0039 6.5726 1.1002 40 1 2.7751 9.6016 0.7403 41 1 6.3849 5.3590 2.2974 42 1 6.3926 5.2439 0.4836 43 1 5.2284 0.9524 -2.2005 44 1 6.2084 2.3717 -1.5478 45 1 7.0787 0.9071 0.3316 46 1 6.0989 -0.5125 -0.3214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700492858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:26 Heat of formation + Delta-G solvation = 61.987958 kcal Electronic energy + Delta-G solvation = -30164.817424 eV Core-core repulsion = 26061.051690 eV Total energy + Delta-G solvation = -4103.765735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.13299 -40.40831 -38.56314 -36.58558 -36.39834 -35.00910 -33.74952 -32.00641 -31.62095 -30.37586 -28.91691 -27.21842 -25.23481 -25.15334 -23.67880 -23.09857 -22.65653 -21.82725 -21.10674 -19.49525 -18.72097 -18.04312 -17.71786 -17.19112 -16.85099 -16.65847 -15.60169 -15.58451 -14.98661 -14.81079 -14.58882 -14.19180 -13.85618 -13.68813 -13.63523 -13.59580 -13.49125 -13.22038 -12.66148 -12.58093 -12.04984 -11.86262 -11.84977 -11.70539 -11.58256 -11.24395 -11.08273 -10.99276 -10.91339 -10.80977 -10.74885 -10.27302 -10.20913 -10.03512 -9.80696 -9.68659 -9.45360 -9.17917 -8.97178 -8.71247 -6.99129 -5.85772 -3.17839 1.16898 1.99000 2.37156 2.85595 3.15128 3.36434 3.41980 3.43390 3.57301 3.95869 4.02506 4.37466 4.44003 4.46805 4.52152 4.66041 4.82206 5.00547 5.12009 5.12974 5.20732 5.24003 5.33281 5.35524 5.43165 5.46887 5.52033 5.54703 5.65613 5.66737 5.75662 5.82595 5.87021 5.90083 6.24845 6.36920 6.40948 6.56584 6.70354 6.77555 7.03888 7.21539 7.42470 7.66532 7.87322 7.88825 8.04594 8.33804 8.96362 9.62376 10.47354 11.31752 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003380 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.140562 B = 8282.794404 C = 9096.847014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.223 4.223 4 C 0.020 3.980 5 C -0.097 4.097 6 C 0.559 3.441 7 O -0.516 6.516 8 N -0.706 5.706 9 C 0.123 3.877 10 C -0.096 4.096 11 C 0.083 3.917 12 O -0.573 6.573 13 C 0.167 3.833 14 N -0.602 5.602 15 C -0.221 4.221 16 H 0.083 0.917 17 C -0.005 4.005 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.126 3.874 24 C -0.140 4.140 25 C -0.131 4.131 26 O 0.102 5.898 27 N -0.366 5.366 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.033 0.967 37 H 0.372 0.628 38 H 0.031 0.969 39 H 0.083 0.917 40 H 0.254 0.746 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 -17.219 -5.591 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C -0.244 4.244 4 C -0.044 4.044 5 C -0.102 4.102 6 C 0.342 3.658 7 O -0.391 6.391 8 N -0.357 5.357 9 C 0.037 3.963 10 C -0.135 4.135 11 C 0.005 3.995 12 O -0.377 6.377 13 C 0.041 3.959 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.101 0.899 17 C -0.201 4.201 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.000 4.000 24 C -0.178 4.178 25 C -0.169 4.169 26 O 0.036 5.964 27 N -0.071 5.071 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.189 0.811 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.217 0.783 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.126 0.874 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.305 -17.996 -4.636 18.875 hybrid contribution -0.812 1.652 -0.556 1.923 sum -4.117 -16.344 -5.192 17.636 Atomic orbital electron populations 1.20185 0.85756 1.03947 1.03471 1.23572 0.99098 0.88614 1.02494 1.22362 0.90833 1.01318 1.09902 1.22833 0.95419 0.83672 1.02439 1.19503 0.89356 0.98104 1.03221 1.18862 0.79961 0.82192 0.84825 1.90727 1.41411 1.82279 1.24676 1.46196 1.46296 1.12027 1.31167 1.23075 0.99451 0.82526 0.91279 1.21348 0.93140 1.03749 0.95235 1.22121 0.95288 0.98505 0.83538 1.86506 1.29263 1.92849 1.29128 1.22553 0.94236 0.84297 0.94846 1.45623 1.13473 1.01767 1.72005 1.19001 0.99869 0.80976 1.35015 0.89946 1.24761 0.96317 0.98009 1.01053 1.69774 1.06777 1.31195 1.49139 0.86096 0.77288 0.84180 0.78073 1.21596 1.21573 1.20503 1.22813 0.92808 0.85508 0.98919 1.23271 1.00567 1.03289 0.90633 1.23114 0.94720 0.98792 1.00238 1.84803 1.21726 1.22156 1.67672 1.73853 0.89137 1.23905 1.20204 0.90034 0.90543 0.89800 0.81068 0.76864 0.90679 0.89004 0.93262 0.94832 0.78283 0.95111 0.89898 0.93559 0.92926 0.94648 0.87364 0.86683 0.86593 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.47 36.00 0.38 -0.19 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 C -0.22 -2.39 10.77 -39.38 -0.42 -2.81 16 4 C 0.02 0.23 6.67 -35.31 -0.24 0.00 16 5 C -0.10 -1.09 2.39 -156.81 -0.37 -1.46 16 6 C 0.56 8.04 6.48 -10.99 -0.07 7.96 16 7 O -0.52 -9.35 15.17 5.56 0.08 -9.27 16 8 N -0.71 -9.82 4.67 -49.08 -0.23 -10.05 16 9 C 0.12 2.19 0.67 -134.04 -0.09 2.10 16 10 C -0.10 -1.80 4.84 -26.73 -0.13 -1.93 16 11 C 0.08 1.31 6.79 37.16 0.25 1.56 16 12 O -0.57 -9.09 13.66 -35.23 -0.48 -9.57 16 13 C 0.17 3.55 6.64 -2.97 -0.02 3.53 16 14 N -0.60 -14.75 3.54 -177.72 -0.63 -15.38 16 15 C -0.22 -6.02 10.70 -15.06 -0.16 -6.18 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 18 N -0.92 -25.97 11.38 55.49 0.63 -25.34 16 19 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.13 2.61 7.68 -2.97 -0.02 2.59 16 24 C -0.14 -1.19 9.94 -26.73 -0.27 -1.46 16 25 C -0.13 -1.25 9.73 -26.73 -0.26 -1.51 16 26 O 0.10 1.28 10.99 17.17 0.19 1.47 16 27 N -0.37 -4.69 12.07 33.42 0.40 -4.29 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.17 1.56 7.37 -52.49 -0.39 1.17 16 32 H 0.40 4.52 8.05 -40.82 -0.33 4.19 16 33 H 0.07 1.49 6.83 -51.93 -0.35 1.13 16 34 H 0.09 2.00 8.03 -51.93 -0.42 1.59 16 35 H 0.05 0.77 7.31 -51.92 -0.38 0.39 16 36 H 0.03 0.47 7.86 -51.93 -0.41 0.07 16 37 H 0.37 3.90 9.12 45.56 0.42 4.32 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.95 6.42 -51.93 -0.33 1.62 16 40 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.12 1.16 8.12 -51.93 -0.42 0.74 16 46 H 0.11 0.91 8.01 -51.93 -0.42 0.50 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -33.59 387.31 -7.30 -40.89 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -5.96 Total: 7.48 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.12 Total: 1.60 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.18 Total: -55.06 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.21 Total: -17.37 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.59 -7.30 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700492858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.874 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds