Wall clock time and date at job start Tue Mar 31 2020 19:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41380 * 126.80690 * 2 1 4 4 C 1.35444 * 103.98609 * 180.20279 * 3 2 1 5 5 C 1.50699 * 126.77512 * 179.74222 * 4 3 2 6 6 C 1.50701 * 115.55125 * 42.17823 * 5 4 3 7 7 O 1.21280 * 119.99974 * 107.43669 * 6 5 4 8 8 N 1.34773 * 120.00082 * 287.43878 * 6 5 4 9 9 C 1.46498 * 120.00466 * 185.00200 * 8 6 5 10 10 C 1.53001 * 112.94235 * 293.63010 * 9 8 6 11 11 C 1.52995 * 109.47354 * 302.78821 * 10 9 8 12 12 O 1.42896 * 109.47503 * 184.65492 * 11 10 9 13 13 C 1.53948 * 113.74434 * 161.89475 * 9 8 6 14 14 N 1.47578 * 86.11569 * 222.04777 * 13 9 8 15 15 C 1.36938 * 134.49391 * 204.64011 * 14 13 9 16 16 H 1.07998 * 120.00395 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99698 * 0.02562 * 15 14 13 18 18 N 1.31613 * 120.00022 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47542 * 89.99817 * 19 17 15 21 21 H 1.48503 * 109.47133 * 209.99923 * 19 17 15 22 22 H 1.48499 * 109.47068 * 330.00016 * 19 17 15 23 23 C 1.47586 * 91.01651 * 24.64055 * 14 13 9 24 24 C 1.53003 * 117.50024 * 256.46943 * 5 4 3 25 25 C 1.52999 * 117.50115 * 187.84493 * 5 4 3 26 26 O 1.34041 * 106.44858 * 359.64948 * 4 3 2 27 27 N 1.20921 * 111.56395 * 0.37799 * 26 4 3 28 28 H 1.08995 * 109.46999 * 90.00158 * 1 2 3 29 29 H 1.09001 * 109.47228 * 210.00620 * 1 2 3 30 30 H 1.09006 * 109.46677 * 330.00430 * 1 2 3 31 31 H 1.07996 * 128.00052 * 359.94117 * 3 2 1 32 32 H 0.97005 * 119.99795 * 5.00225 * 8 6 5 33 33 H 1.09004 * 109.47087 * 62.78974 * 10 9 8 34 34 H 1.08997 * 109.47050 * 182.78887 * 10 9 8 35 35 H 1.09010 * 109.47105 * 304.65538 * 11 10 9 36 36 H 1.09004 * 109.47199 * 64.65147 * 11 10 9 37 37 H 0.96699 * 114.00127 * 179.97438 * 12 11 10 38 38 H 1.08999 * 113.76657 * 336.35143 * 13 9 8 39 39 H 1.08997 * 113.76770 * 107.75078 * 13 9 8 40 40 H 0.97004 * 120.00017 * 179.97438 * 18 17 15 41 41 H 1.08996 * 113.76869 * 221.05360 * 23 14 13 42 42 H 1.09003 * 113.86950 * 89.67545 * 23 14 13 43 43 H 1.09001 * 117.49849 * 0.02562 * 24 5 4 44 44 H 1.08999 * 117.49994 * 145.01834 * 24 5 4 45 45 H 1.08999 * 117.50628 * 214.97921 * 25 5 4 46 46 H 1.09005 * 117.50107 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6067 -0.0047 5 6 4.9021 1.3693 -0.0121 6 6 4.9570 2.5692 0.8981 7 8 5.6184 2.5299 1.9139 8 7 4.2711 3.6858 0.5833 9 6 4.4104 4.8882 1.4085 10 6 3.8487 4.7109 2.8205 11 6 2.3759 4.3051 2.7364 12 8 1.8223 4.2450 4.0524 13 6 3.9415 6.1773 0.7096 14 7 5.1416 6.8096 1.2910 15 6 5.4859 8.0934 1.6201 16 1 6.4570 8.3001 2.0453 17 6 4.5868 9.1294 1.4073 18 7 3.4036 8.8777 0.8887 19 14 5.0567 10.8809 1.8555 20 1 5.7032 11.5340 0.6890 21 1 3.8373 11.6390 2.2343 22 1 6.0032 10.8620 2.9996 23 6 5.8216 5.5024 1.3754 24 6 5.6661 1.4504 -1.3353 25 6 6.1910 0.5670 -0.2017 26 8 3.4537 -0.7255 0.0008 27 7 2.2867 -1.0424 0.0006 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 2.0710 2.1742 -0.0009 32 1 3.6851 3.6932 -0.1897 33 1 4.4103 3.9345 3.3402 34 1 3.9361 5.6500 3.3669 35 1 1.8296 5.0405 2.1456 36 1 2.2951 3.3265 2.2631 37 1 0.8889 3.9935 4.0753 38 1 3.9595 6.1185 -0.3786 39 1 3.0039 6.5726 1.1002 40 1 2.7751 9.6016 0.7403 41 1 6.3849 5.3590 2.2974 42 1 6.3926 5.2439 0.4836 43 1 5.2284 0.9524 -2.2005 44 1 6.2084 2.3717 -1.5478 45 1 7.0787 0.9071 0.3316 46 1 6.0989 -0.5125 -0.3214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700492858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:25 Heat of formation + Delta-G solvation = 37.611731 kcal Electronic energy + Delta-G solvation = -30165.874457 eV Core-core repulsion = 26061.051690 eV Total energy + Delta-G solvation = -4104.822767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.98019 -41.71467 -39.92470 -37.71612 -37.63941 -35.80735 -35.29348 -33.76461 -32.50754 -31.88692 -29.59297 -29.03891 -26.86637 -26.38116 -24.88908 -24.21256 -23.38277 -23.30898 -22.35100 -20.48472 -20.19542 -19.03305 -18.75364 -18.59404 -18.43128 -17.64271 -17.14412 -16.74912 -16.48839 -16.15347 -15.75929 -15.74620 -15.25252 -14.88160 -14.77127 -14.39074 -14.31210 -14.18079 -13.96519 -13.71281 -13.41692 -13.33649 -13.24603 -12.90939 -12.81818 -12.58865 -12.56039 -12.44965 -12.25313 -12.08248 -12.02352 -11.75207 -11.70418 -11.42203 -11.06995 -10.98852 -10.90252 -10.76091 -10.17890 -10.14189 -8.95221 -7.92563 -5.24984 0.31665 1.18273 1.33617 1.47432 1.48523 1.56939 1.81882 2.10241 2.48921 2.71411 3.12833 3.21232 3.23898 3.27134 3.35382 3.57210 3.62992 3.73056 3.84600 4.01274 4.12017 4.24329 4.28745 4.30516 4.44548 4.50833 4.63747 4.67924 4.70200 4.71117 4.72332 4.84762 4.85262 4.87808 4.93790 4.99425 5.13166 5.13926 5.15915 5.22426 5.24195 5.49084 5.66586 5.90729 6.50774 6.89849 6.91723 7.17043 7.21230 7.57850 8.50204 9.24111 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003380 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.140562 B = 8282.794404 C = 9096.847014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 C -0.225 4.225 4 C 0.016 3.984 5 C -0.109 4.109 6 C 0.563 3.437 7 O -0.555 6.555 8 N -0.693 5.693 9 C 0.155 3.845 10 C -0.091 4.091 11 C 0.093 3.907 12 O -0.593 6.593 13 C 0.173 3.827 14 N -0.630 5.630 15 C -0.237 4.237 16 H 0.079 0.921 17 C -0.054 4.054 18 N -0.945 5.945 19 Si 0.974 3.026 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.124 3.876 24 C -0.116 4.116 25 C -0.132 4.132 26 O 0.090 5.910 27 N -0.392 5.392 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.188 0.812 32 H 0.414 0.586 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.396 0.604 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.251 0.749 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.130 0.870 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -18.098 -6.861 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C -0.247 4.247 4 C -0.048 4.048 5 C -0.113 4.113 6 C 0.348 3.652 7 O -0.432 6.432 8 N -0.345 5.345 9 C 0.068 3.932 10 C -0.130 4.130 11 C 0.015 3.985 12 O -0.401 6.401 13 C 0.048 3.952 14 N -0.357 5.357 15 C -0.365 4.365 16 H 0.096 0.904 17 C -0.248 4.248 18 N -0.593 5.593 19 Si 0.803 3.197 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.199 1.199 23 C -0.002 4.002 24 C -0.153 4.153 25 C -0.169 4.169 26 O 0.026 5.974 27 N -0.100 5.100 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.205 0.795 32 H 0.251 0.749 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.246 0.754 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.127 0.873 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.086 -18.914 -5.934 20.240 hybrid contribution -0.555 1.866 -0.122 1.951 sum -4.640 -17.048 -6.055 18.677 Atomic orbital electron populations 1.20357 0.83548 1.04832 1.04743 1.24138 1.00556 0.88161 1.00975 1.22628 0.90504 1.02051 1.09475 1.22903 0.95704 0.83597 1.02610 1.19264 0.90274 0.97191 1.04608 1.19290 0.78688 0.82695 0.84533 1.90721 1.42909 1.83069 1.26543 1.45901 1.46723 1.10741 1.31153 1.22290 0.96813 0.83100 0.90978 1.21218 0.95579 1.01271 0.94942 1.21965 0.93055 0.99617 0.83847 1.86446 1.31544 1.93098 1.29047 1.22437 0.92328 0.85391 0.95076 1.45880 1.15294 1.02013 1.72488 1.19285 0.99860 0.82592 1.34809 0.90352 1.25479 0.96441 1.01342 1.01542 1.69915 1.07398 1.31795 1.50161 0.85149 0.76818 0.79882 0.77886 1.21170 1.21802 1.19927 1.22911 0.94241 0.84384 0.98690 1.23415 0.98613 1.03178 0.90063 1.23221 0.93390 0.99698 1.00594 1.84775 1.21828 1.22523 1.68239 1.73853 0.89469 1.24931 1.21749 0.88483 0.90401 0.88174 0.79511 0.74850 0.91919 0.92852 0.93040 0.92486 0.75448 0.94361 0.92209 0.93982 0.94251 0.93384 0.85198 0.86216 0.87349 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.47 71.24 0.75 -0.21 16 2 C 0.02 0.40 7.33 43.58 0.32 0.72 16 3 C -0.23 -4.27 10.77 22.40 0.24 -4.03 16 4 C 0.02 0.33 6.67 25.04 0.17 0.50 16 5 C -0.11 -2.22 2.39 -53.67 -0.13 -2.35 16 6 C 0.56 15.42 6.48 87.66 0.57 15.99 16 7 O -0.56 -19.92 15.17 -3.03 -0.05 -19.97 16 8 N -0.69 -18.19 4.67 -427.57 -2.00 -20.19 16 9 C 0.16 5.52 0.67 5.36 0.00 5.52 16 10 C -0.09 -3.45 4.84 30.59 0.15 -3.30 16 11 C 0.09 2.82 6.79 71.98 0.49 3.31 16 12 O -0.59 -18.12 13.66 -148.98 -2.03 -20.16 16 13 C 0.17 7.39 6.64 86.48 0.57 7.97 16 14 N -0.63 -31.34 3.54 -716.18 -2.54 -33.88 16 15 C -0.24 -13.12 10.70 84.03 0.90 -12.22 16 16 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 17 C -0.05 -2.98 5.50 84.86 0.47 -2.52 16 18 N -0.94 -53.73 11.38 21.65 0.25 -53.48 16 19 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.12 5.16 7.68 86.48 0.66 5.83 16 24 C -0.12 -1.63 9.94 30.60 0.30 -1.33 16 25 C -0.13 -2.26 9.73 30.59 0.30 -1.96 16 26 O 0.09 2.11 10.99 71.62 0.79 2.90 16 27 N -0.39 -9.49 12.07 -49.56 -0.60 -10.09 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.19 2.79 7.37 -2.91 -0.02 2.77 16 32 H 0.41 8.36 8.05 -92.70 -0.75 7.61 16 33 H 0.06 2.53 6.83 -2.39 -0.02 2.51 16 34 H 0.05 2.42 8.03 -2.39 -0.02 2.40 16 35 H 0.05 1.55 7.31 -2.38 -0.02 1.54 16 36 H 0.06 1.47 7.86 -2.39 -0.02 1.45 16 37 H 0.40 7.51 9.12 -74.06 -0.68 6.83 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 2.85 6.42 -2.39 -0.02 2.83 16 40 H 0.25 13.90 8.31 -92.71 -0.77 13.12 16 41 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.11 2.05 8.12 -2.39 -0.02 2.03 16 46 H 0.12 1.80 8.01 -2.38 -0.02 1.78 16 Total: -1.00 -73.80 387.31 1.21 -72.59 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.40 Total: 23.53 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.76 Total: 11.91 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.88 Total: -117.64 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.29 Total: -37.23 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -73.80 1.21 -72.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700492858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.199 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds