Wall clock time and date at job start Tue Mar 31 2020 19:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35133 * 126.44124 * 2 1 4 4 O 1.33926 * 108.76504 * 179.86935 * 3 2 1 5 5 C 1.34911 * 109.38460 * 0.41042 * 4 3 2 6 6 C 1.46659 * 125.98804 * 179.77908 * 5 4 3 7 7 O 1.21691 * 120.00038 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00008 * 359.96649 * 6 5 4 9 9 C 1.46501 * 120.00203 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.46913 * 179.97438 * 9 8 6 11 11 N 1.46905 * 109.46778 * 179.97438 * 10 9 8 12 12 C 1.46899 * 110.99779 * 190.00170 * 11 10 9 13 13 C 1.50707 * 109.46699 * 162.32053 * 12 11 10 14 14 O 1.21288 * 120.00068 * 1.34494 * 13 12 11 15 15 N 1.34777 * 119.99729 * 181.34296 * 13 12 11 16 16 C 1.37099 * 119.99822 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99923 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99653 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00563 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99861 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47506 * 89.99355 * 20 18 16 22 22 H 1.48501 * 109.47093 * 209.99722 * 20 18 16 23 23 H 1.48503 * 109.46718 * 329.99352 * 20 18 16 24 24 C 1.46900 * 110.99827 * 66.05025 * 11 10 9 25 25 C 1.52993 * 117.49900 * 127.70246 * 24 11 10 26 26 C 1.52997 * 117.49720 * 59.07690 * 24 11 10 27 27 C 1.36540 * 108.02615 * 359.75009 * 5 4 3 28 28 H 1.08993 * 109.46773 * 269.68581 * 1 2 3 29 29 H 1.08998 * 109.46838 * 29.68078 * 1 2 3 30 30 H 1.08997 * 109.47183 * 149.68217 * 1 2 3 31 31 H 1.08005 * 125.61463 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99487 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.46868 * 300.00115 * 9 8 6 34 34 H 1.09001 * 109.46783 * 59.99795 * 9 8 6 35 35 H 1.08997 * 109.47623 * 299.99868 * 10 9 8 36 36 H 1.09001 * 109.47386 * 60.00381 * 10 9 8 37 37 H 1.08993 * 109.47526 * 282.31939 * 12 11 10 38 38 H 1.08997 * 109.47063 * 42.32510 * 12 11 10 39 39 H 0.97008 * 120.00207 * 359.97438 * 15 13 12 40 40 H 0.96996 * 120.00756 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55002 * 273.40889 * 24 11 10 42 42 H 1.09000 * 117.50033 * 359.97438 * 25 24 11 43 43 H 1.09001 * 117.50362 * 145.02089 * 25 24 11 44 44 H 1.09000 * 117.49914 * 214.97394 * 26 24 11 45 45 H 1.08994 * 117.50286 * 359.97438 * 26 24 11 46 46 H 1.07999 * 126.64953 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0871 0.0000 4 8 3.5858 0.6805 0.0029 5 6 3.6260 -0.6680 -0.0043 6 6 4.8379 -1.4940 -0.0086 7 8 4.7471 -2.7075 -0.0146 8 7 6.0522 -0.9091 -0.0059 9 6 7.2627 -1.7342 -0.0107 10 6 8.4965 -0.8294 -0.0070 11 7 9.7104 -1.6568 -0.0112 12 6 10.9061 -0.8383 0.2302 13 6 12.0482 -1.7286 0.6479 14 8 11.8890 -2.9292 0.7122 15 7 13.2464 -1.1904 0.9500 16 6 14.2854 -2.0003 1.3295 17 1 14.1437 -3.0694 1.3868 18 6 15.5206 -1.4454 1.6415 19 7 15.6929 -0.1445 1.5723 20 14 16.9366 -2.5489 2.1579 21 1 17.7047 -2.9636 0.9565 22 1 17.8293 -1.8077 3.0846 23 1 16.4014 -3.7528 2.8431 24 6 9.8314 -2.4076 -1.2681 25 6 11.1504 -2.2937 -2.0348 26 6 9.8934 -1.6034 -2.5682 27 6 2.3408 -1.1291 -0.0063 28 1 -0.3632 -0.0056 1.0276 29 1 -0.3633 0.8928 -0.5089 30 1 -0.3633 -0.8871 -0.5187 31 1 1.9770 2.1146 -0.0004 32 1 6.1245 0.0582 -0.0008 33 1 7.2739 -2.3680 0.8759 34 1 7.2732 -2.3587 -0.9040 35 1 8.4852 -0.1958 -0.8939 36 1 8.4863 -0.2046 0.8860 37 1 11.1742 -0.3081 -0.6835 38 1 10.6993 -0.1175 1.0212 39 1 13.3738 -0.2301 0.8983 40 1 16.5552 0.2428 1.7897 41 1 9.3151 -3.3672 -1.2940 42 1 11.9283 -1.6613 -1.6069 43 1 11.5023 -3.1784 -2.5654 44 1 9.4183 -2.0341 -3.4496 45 1 9.8440 -0.5173 -2.4910 46 1 2.0266 -2.1624 -0.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713561402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:19 Heat of formation + Delta-G solvation = -13.604837 kcal Electronic energy + Delta-G solvation = -27909.407320 eV Core-core repulsion = 23802.363636 eV Total energy + Delta-G solvation = -4107.043684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07368 -39.87437 -39.32346 -37.31154 -35.47831 -34.57933 -33.86073 -33.20002 -31.24493 -31.05706 -29.49689 -27.72518 -26.44355 -24.36098 -23.93703 -22.70216 -21.88070 -21.49987 -20.40926 -19.91431 -18.81899 -18.23769 -17.76908 -16.97064 -16.76551 -16.60964 -16.24559 -15.86601 -15.40713 -14.92587 -14.49155 -14.27004 -14.02502 -13.92258 -13.87891 -13.59840 -13.49180 -13.39761 -13.30692 -12.99712 -12.62248 -12.33207 -12.14608 -11.94958 -11.54295 -11.49108 -11.21800 -11.01015 -10.97383 -10.58201 -10.44047 -10.37619 -10.19349 -10.10605 -9.89386 -9.45149 -9.37581 -8.93562 -8.48185 -7.93880 -7.89482 -6.39083 -3.79551 0.72185 1.91593 2.31623 2.86350 2.91488 3.19456 3.28044 3.34150 3.86428 3.97735 4.07638 4.23769 4.32059 4.36090 4.54261 4.72694 4.89792 4.97305 5.11052 5.12839 5.15879 5.17401 5.19648 5.23486 5.28304 5.38256 5.40789 5.52102 5.56645 5.66399 5.76018 5.80491 5.86039 5.92762 5.99687 6.06531 6.21573 6.27075 6.31087 6.45263 6.47662 7.09614 7.20299 7.24282 7.57831 7.81928 8.08876 8.65249 9.21674 9.57401 10.10120 10.78840 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.001830 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.870137 B =15300.433168 C =15571.552517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.010 4.010 4 O -0.163 6.163 5 C -0.074 4.074 6 C 0.602 3.398 7 O -0.517 6.517 8 N -0.717 5.717 9 C 0.124 3.876 10 C 0.046 3.954 11 N -0.480 5.480 12 C 0.039 3.961 13 C 0.448 3.552 14 O -0.566 6.566 15 N -0.569 5.569 16 C -0.296 4.296 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.904 5.904 20 Si 0.928 3.072 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.041 3.959 25 C -0.165 4.165 26 C -0.228 4.228 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.209 0.791 32 H 0.404 0.596 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.390 0.610 40 H 0.270 0.730 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.989 7.339 -5.979 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.080 4.080 4 O -0.058 6.058 5 C -0.126 4.126 6 C 0.388 3.612 7 O -0.394 6.394 8 N -0.368 5.368 9 C 0.000 4.000 10 C -0.082 4.082 11 N -0.202 5.202 12 C -0.093 4.093 13 C 0.232 3.768 14 O -0.449 6.449 15 N -0.207 5.207 16 C -0.425 4.425 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.546 5.546 20 Si 0.756 3.244 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.068 4.068 25 C -0.203 4.203 26 C -0.267 4.267 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.239 0.761 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.223 0.777 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -25.714 5.571 -5.480 26.875 hybrid contribution 0.871 1.284 -0.417 1.607 sum -24.843 6.855 -5.897 26.437 Atomic orbital electron populations 1.20191 0.88561 1.02913 1.02428 1.20512 0.97786 0.92405 1.08855 1.24213 0.79899 1.00078 1.03818 1.84054 1.29396 1.21691 1.70643 1.22088 0.96199 0.80532 1.13776 1.16489 0.81159 0.86371 0.77214 1.90913 1.85900 1.12210 1.50374 1.45824 1.05572 1.10928 1.74430 1.21357 0.81336 0.93353 1.03910 1.22248 0.89722 0.94741 1.01496 1.61456 1.00579 1.26087 1.32087 1.22016 0.91110 0.95332 1.00806 1.19589 0.83588 0.89044 0.84530 1.90543 1.82665 1.14828 1.56836 1.41857 1.08972 1.09818 1.60034 1.19681 0.88574 0.92645 1.41634 0.87942 1.25229 0.98848 0.96150 0.97745 1.69604 1.25422 1.10042 1.49487 0.85880 0.80435 0.79667 0.78443 1.20492 1.20999 1.19441 1.22627 1.01946 0.98289 0.83904 1.23243 0.91686 1.02982 1.02357 1.23472 1.04442 0.99280 0.99522 1.21865 0.90547 1.00664 1.00834 0.91183 0.91418 0.91216 0.77414 0.76132 0.89803 0.90646 0.93973 0.90059 0.92735 0.89417 0.77657 0.91973 0.85990 0.87844 0.88580 0.88888 0.89467 0.82224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.39 36.01 0.37 -0.01 16 2 C -0.19 -1.41 6.14 -104.92 -0.64 -2.06 16 3 C -0.01 -0.07 12.00 29.63 0.36 0.29 16 4 O -0.16 -1.42 10.40 5.02 0.05 -1.36 16 5 C -0.07 -0.77 7.13 -36.80 -0.26 -1.04 16 6 C 0.60 7.40 7.79 -12.86 -0.10 7.30 16 7 O -0.52 -8.09 16.86 5.20 0.09 -8.01 16 8 N -0.72 -7.42 5.55 -61.63 -0.34 -7.76 16 9 C 0.12 1.47 5.67 -4.04 -0.02 1.45 16 10 C 0.05 0.54 4.96 -3.82 -0.02 0.52 16 11 N -0.48 -7.62 4.34 -228.09 -0.99 -8.62 16 12 C 0.04 0.66 5.00 -4.97 -0.02 0.64 16 13 C 0.45 10.29 5.84 -10.98 -0.06 10.22 16 14 O -0.57 -15.04 14.79 5.55 0.08 -14.96 16 15 N -0.57 -14.15 5.29 -10.96 -0.06 -14.21 16 16 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 20 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 24 C 0.04 0.64 4.55 -67.72 -0.31 0.33 16 25 C -0.17 -2.72 8.48 -26.73 -0.23 -2.94 16 26 C -0.23 -2.98 9.26 -26.73 -0.25 -3.22 16 27 C -0.12 -1.13 10.57 -39.40 -0.42 -1.54 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.21 0.49 8.06 -52.48 -0.42 0.07 16 32 H 0.40 3.22 8.23 -40.82 -0.34 2.88 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 0.96 7.30 -51.93 -0.38 0.58 16 35 H 0.04 0.44 6.87 -51.93 -0.36 0.08 16 36 H 0.08 0.87 7.84 -51.93 -0.41 0.46 16 37 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 38 H 0.09 1.35 7.77 -51.93 -0.40 0.94 16 39 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.12 1.89 8.03 -51.93 -0.42 1.47 16 42 H 0.10 1.94 4.92 -51.93 -0.26 1.68 16 43 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.08 7.15 -51.93 -0.37 0.71 16 46 H 0.16 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -33.57 386.55 -7.94 -41.51 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.45 Total: 13.13 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.85 Total: 2.11 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.67 Total: -54.31 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.22 Total: -24.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.57 -7.94 -41.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713561402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.906 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds