Wall clock time and date at job start Tue Mar 31 2020 19:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35133 * 126.44124 * 2 1 4 4 O 1.33926 * 108.76504 * 179.86935 * 3 2 1 5 5 C 1.34911 * 109.38460 * 0.41042 * 4 3 2 6 6 C 1.46659 * 125.98804 * 179.77908 * 5 4 3 7 7 O 1.21691 * 120.00038 * 179.97438 * 6 5 4 8 8 N 1.34781 * 120.00008 * 359.96649 * 6 5 4 9 9 C 1.46501 * 120.00203 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.46913 * 179.97438 * 9 8 6 11 11 N 1.46905 * 109.46778 * 179.97438 * 10 9 8 12 12 C 1.46899 * 110.99779 * 190.00170 * 11 10 9 13 13 C 1.50707 * 109.46699 * 162.32053 * 12 11 10 14 14 O 1.21288 * 120.00068 * 1.34494 * 13 12 11 15 15 N 1.34777 * 119.99729 * 181.34296 * 13 12 11 16 16 C 1.37099 * 119.99822 * 180.02562 * 15 13 12 17 17 H 1.07993 * 119.99923 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99653 * 180.02562 * 16 15 13 19 19 N 1.31407 * 120.00563 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99861 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47506 * 89.99355 * 20 18 16 22 22 H 1.48501 * 109.47093 * 209.99722 * 20 18 16 23 23 H 1.48503 * 109.46718 * 329.99352 * 20 18 16 24 24 C 1.46900 * 110.99827 * 66.05025 * 11 10 9 25 25 C 1.52993 * 117.49900 * 127.70246 * 24 11 10 26 26 C 1.52997 * 117.49720 * 59.07690 * 24 11 10 27 27 C 1.36540 * 108.02615 * 359.75009 * 5 4 3 28 28 H 1.08993 * 109.46773 * 269.68581 * 1 2 3 29 29 H 1.08998 * 109.46838 * 29.68078 * 1 2 3 30 30 H 1.08997 * 109.47183 * 149.68217 * 1 2 3 31 31 H 1.08005 * 125.61463 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99487 * 0.02562 * 8 6 5 33 33 H 1.08997 * 109.46868 * 300.00115 * 9 8 6 34 34 H 1.09001 * 109.46783 * 59.99795 * 9 8 6 35 35 H 1.08997 * 109.47623 * 299.99868 * 10 9 8 36 36 H 1.09001 * 109.47386 * 60.00381 * 10 9 8 37 37 H 1.08993 * 109.47526 * 282.31939 * 12 11 10 38 38 H 1.08997 * 109.47063 * 42.32510 * 12 11 10 39 39 H 0.97008 * 120.00207 * 359.97438 * 15 13 12 40 40 H 0.96996 * 120.00756 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55002 * 273.40889 * 24 11 10 42 42 H 1.09000 * 117.50033 * 359.97438 * 25 24 11 43 43 H 1.09001 * 117.50362 * 145.02089 * 25 24 11 44 44 H 1.09000 * 117.49914 * 214.97394 * 26 24 11 45 45 H 1.08994 * 117.50286 * 359.97438 * 26 24 11 46 46 H 1.07999 * 126.64953 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0871 0.0000 4 8 3.5858 0.6805 0.0029 5 6 3.6260 -0.6680 -0.0043 6 6 4.8379 -1.4940 -0.0086 7 8 4.7471 -2.7075 -0.0146 8 7 6.0522 -0.9091 -0.0059 9 6 7.2627 -1.7342 -0.0107 10 6 8.4965 -0.8294 -0.0070 11 7 9.7104 -1.6568 -0.0112 12 6 10.9061 -0.8383 0.2302 13 6 12.0482 -1.7286 0.6479 14 8 11.8890 -2.9292 0.7122 15 7 13.2464 -1.1904 0.9500 16 6 14.2854 -2.0003 1.3295 17 1 14.1437 -3.0694 1.3868 18 6 15.5206 -1.4454 1.6415 19 7 15.6929 -0.1445 1.5723 20 14 16.9366 -2.5489 2.1579 21 1 17.7047 -2.9636 0.9565 22 1 17.8293 -1.8077 3.0846 23 1 16.4014 -3.7528 2.8431 24 6 9.8314 -2.4076 -1.2681 25 6 11.1504 -2.2937 -2.0348 26 6 9.8934 -1.6034 -2.5682 27 6 2.3408 -1.1291 -0.0063 28 1 -0.3632 -0.0056 1.0276 29 1 -0.3633 0.8928 -0.5089 30 1 -0.3633 -0.8871 -0.5187 31 1 1.9770 2.1146 -0.0004 32 1 6.1245 0.0582 -0.0008 33 1 7.2739 -2.3680 0.8759 34 1 7.2732 -2.3587 -0.9040 35 1 8.4852 -0.1958 -0.8939 36 1 8.4863 -0.2046 0.8860 37 1 11.1742 -0.3081 -0.6835 38 1 10.6993 -0.1175 1.0212 39 1 13.3738 -0.2301 0.8983 40 1 16.5552 0.2428 1.7897 41 1 9.3151 -3.3672 -1.2940 42 1 11.9283 -1.6613 -1.6069 43 1 11.5023 -3.1784 -2.5654 44 1 9.4183 -2.0341 -3.4496 45 1 9.8440 -0.5173 -2.4910 46 1 2.0266 -2.1624 -0.0114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713561402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:18 Heat of formation + Delta-G solvation = -38.923599 kcal Electronic energy + Delta-G solvation = -27910.505224 eV Core-core repulsion = 23802.363636 eV Total energy + Delta-G solvation = -4108.141588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.69870 -41.09223 -40.49731 -38.97063 -36.47342 -35.84806 -35.16684 -34.35887 -33.20986 -31.87149 -30.58626 -28.40976 -27.69788 -26.09238 -24.89228 -23.65866 -23.06402 -22.16779 -21.59726 -21.00441 -20.38674 -19.68586 -18.95990 -18.14139 -17.69003 -17.46731 -17.34573 -17.15974 -16.48910 -16.36845 -16.06367 -15.62270 -15.29288 -15.16074 -14.93944 -14.70917 -14.34862 -14.15627 -14.07796 -13.94257 -13.58212 -13.50709 -13.47150 -13.19186 -13.03132 -12.72929 -12.55417 -12.39049 -12.31086 -12.16275 -12.10563 -11.62255 -11.56913 -11.46115 -11.06040 -10.74758 -10.31185 -10.27655 -9.95039 -9.54746 -9.19597 -8.43124 -5.90673 -0.00293 1.33691 1.38569 1.41937 1.53935 1.58355 2.04267 2.05170 2.12506 2.31575 2.81025 2.88620 3.23349 3.40407 3.66449 3.72324 3.82086 3.94443 3.96875 4.01673 4.07163 4.11886 4.30446 4.34787 4.38576 4.49153 4.55126 4.65737 4.71945 4.85645 4.88897 4.90940 4.95205 4.96293 5.03774 5.08958 5.14169 5.16154 5.22236 5.44332 5.51062 5.81659 5.84184 6.07303 6.11398 6.37842 6.65972 6.95192 7.18446 7.62465 8.19870 8.74369 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026972 B = 0.001830 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.870137 B =15300.433168 C =15571.552517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C 0.009 3.991 4 O -0.165 6.165 5 C -0.102 4.102 6 C 0.600 3.400 7 O -0.563 6.563 8 N -0.702 5.702 9 C 0.133 3.867 10 C 0.054 3.946 11 N -0.503 5.503 12 C 0.053 3.947 13 C 0.449 3.551 14 O -0.607 6.607 15 N -0.579 5.579 16 C -0.327 4.327 17 H 0.076 0.924 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.989 3.011 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.275 1.275 24 C 0.029 3.971 25 C -0.194 4.194 26 C -0.185 4.185 27 C -0.125 4.125 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.254 0.746 32 H 0.418 0.582 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.395 0.605 40 H 0.276 0.724 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.615 10.053 -6.540 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.061 4.061 4 O -0.060 6.060 5 C -0.153 4.153 6 C 0.388 3.612 7 O -0.443 6.443 8 N -0.353 5.353 9 C 0.009 3.991 10 C -0.074 4.074 11 N -0.226 5.226 12 C -0.078 4.078 13 C 0.236 3.764 14 O -0.492 6.492 15 N -0.218 5.218 16 C -0.457 4.457 17 H 0.094 0.906 18 C -0.212 4.212 19 N -0.563 5.563 20 Si 0.813 3.187 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.200 1.200 24 C -0.079 4.079 25 C -0.231 4.231 26 C -0.224 4.224 27 C -0.146 4.146 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.269 0.731 32 H 0.256 0.744 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.228 0.772 40 H 0.085 0.915 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.132 0.868 45 H 0.123 0.877 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.347 8.344 -6.048 29.224 hybrid contribution 1.244 0.461 -0.255 1.351 sum -26.103 8.805 -6.303 28.260 Atomic orbital electron populations 1.20261 0.86678 1.03888 1.03107 1.20848 0.99156 0.91735 1.09208 1.25135 0.78684 1.01680 1.00570 1.84044 1.30724 1.20527 1.70716 1.21684 0.95509 0.81406 1.16741 1.16735 0.82027 0.86073 0.76376 1.90880 1.86648 1.14158 1.52653 1.45635 1.04598 1.11485 1.73589 1.21122 0.82167 0.93392 1.02429 1.22255 0.87399 0.94288 1.03426 1.61306 1.01321 1.27125 1.32815 1.21827 0.89370 0.94282 1.02329 1.20624 0.84215 0.89277 0.82314 1.90513 1.83493 1.17116 1.58044 1.41905 1.09316 1.09726 1.60813 1.19603 0.90330 0.92025 1.43739 0.90557 1.25945 1.00524 0.97532 0.97234 1.69660 1.26202 1.10941 1.49489 0.84989 0.77566 0.77840 0.78312 1.19779 1.19618 1.20034 1.22617 1.01176 0.99005 0.85137 1.23152 0.92232 1.03407 1.04318 1.23506 1.00495 0.99883 0.98563 1.22098 0.91022 1.01391 1.00128 0.90587 0.89339 0.91430 0.73053 0.74445 0.92121 0.91542 0.91507 0.88426 0.90763 0.86951 0.77182 0.91471 0.86727 0.90345 0.89322 0.86819 0.87745 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 71.24 0.74 0.19 16 2 C -0.21 -2.59 6.14 -20.06 -0.12 -2.71 16 3 C 0.01 0.08 12.00 67.10 0.81 0.89 16 4 O -0.16 -2.51 10.40 -4.96 -0.05 -2.56 16 5 C -0.10 -2.07 7.13 24.07 0.17 -1.90 16 6 C 0.60 14.88 7.79 86.44 0.67 15.55 16 7 O -0.56 -18.41 16.86 -4.32 -0.07 -18.48 16 8 N -0.70 -13.85 5.55 -467.10 -2.59 -16.44 16 9 C 0.13 3.09 5.67 86.38 0.49 3.58 16 10 C 0.05 1.14 4.96 86.30 0.43 1.57 16 11 N -0.50 -15.48 4.34 -875.54 -3.80 -19.29 16 12 C 0.05 1.76 5.00 85.56 0.43 2.18 16 13 C 0.45 21.00 5.84 87.66 0.51 21.51 16 14 O -0.61 -33.43 14.79 -3.05 -0.05 -33.48 16 15 N -0.58 -29.44 5.29 -306.98 -1.62 -31.06 16 16 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 17 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 19 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 20 Si 0.99 43.46 29.55 68.60 2.03 45.48 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 C 0.03 0.90 4.55 44.91 0.20 1.11 16 25 C -0.19 -6.39 8.48 30.59 0.26 -6.13 16 26 C -0.19 -4.41 9.26 30.59 0.28 -4.13 16 27 C -0.13 -2.34 10.57 22.39 0.24 -2.11 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.25 -0.11 8.06 -2.91 -0.02 -0.14 16 32 H 0.42 5.78 8.23 -92.71 -0.76 5.02 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.68 7.30 -2.39 -0.02 1.66 16 35 H 0.07 1.13 6.87 -2.39 -0.02 1.12 16 36 H 0.10 1.79 7.84 -2.39 -0.02 1.77 16 37 H 0.07 2.20 5.99 -2.39 -0.01 2.19 16 38 H 0.11 3.18 7.77 -2.39 -0.02 3.16 16 39 H 0.39 19.02 7.90 -92.70 -0.73 18.29 16 40 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.12 3.62 8.03 -2.39 -0.02 3.60 16 42 H 0.08 2.98 4.92 -2.39 -0.01 2.97 16 43 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 44 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.10 2.16 7.15 -2.39 -0.02 2.14 16 46 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -76.29 386.55 0.05 -76.24 By element: Atomic # 1 Polarization: 37.91 SS G_CDS: -0.46 Total: 37.45 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 6.39 Total: 11.56 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -7.73 Total: -116.21 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -0.17 Total: -54.52 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -76.29 0.05 -76.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713561402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.316 kcal (2) G-P(sol) polarization free energy of solvation -76.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds