Wall clock time and date at job start Tue Mar 31 2020 18:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35456 * 126.77132 * 2 1 4 4 C 1.41379 * 103.98210 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.79938 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47248 * 359.97438 * 5 4 3 7 7 C 1.42898 * 113.99814 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47172 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00036 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00202 * 180.02562 * 8 7 6 11 11 C 1.47162 * 120.71137 * 0.02649 * 10 8 7 12 12 C 1.55886 * 107.94965 * 132.40809 * 11 10 8 13 13 H 1.09000 * 112.45425 * 181.84303 * 12 11 10 14 14 C 1.54542 * 108.44394 * 307.13427 * 12 11 10 15 15 C 1.53734 * 104.95434 * 88.28879 * 14 12 11 16 16 C 1.54548 * 104.95405 * 359.97438 * 15 14 12 17 17 H 1.08994 * 112.18075 * 146.28519 * 16 15 14 18 18 C 1.47169 * 120.70999 * 180.02562 * 10 8 7 19 19 N 1.48312 * 104.35730 * 24.57736 * 16 15 14 20 20 C 1.36931 * 128.07653 * 139.08244 * 19 16 15 21 21 H 1.08002 * 119.99690 * 26.59016 * 20 19 16 22 22 C 1.38807 * 120.00240 * 206.58103 * 20 19 16 23 23 N 1.31620 * 120.00424 * 196.08287 * 22 20 19 24 24 Si 1.86799 * 119.99929 * 16.08473 * 22 20 19 25 25 H 1.48500 * 109.47182 * 268.86047 * 24 22 20 26 26 H 1.48504 * 109.46957 * 28.85544 * 24 22 20 27 27 H 1.48501 * 109.47633 * 148.85745 * 24 22 20 28 28 N 1.30175 * 106.39861 * 0.26806 * 4 3 2 29 29 O 1.20927 * 111.60165 * 359.53209 * 28 4 3 30 30 H 1.08995 * 109.47144 * 90.00136 * 1 2 3 31 31 H 1.08995 * 109.46707 * 209.99663 * 1 2 3 32 32 H 1.08997 * 109.47164 * 329.99296 * 1 2 3 33 33 H 1.07997 * 128.00940 * 359.95043 * 3 2 1 34 34 H 1.09005 * 109.46890 * 240.00053 * 5 4 3 35 35 H 1.08996 * 109.47364 * 120.00938 * 5 4 3 36 36 H 1.09009 * 109.47243 * 60.00552 * 7 6 5 37 37 H 1.08996 * 109.47449 * 300.00432 * 7 6 5 38 38 H 1.08999 * 109.74893 * 252.36705 * 11 10 8 39 39 H 1.09001 * 109.74882 * 13.09873 * 11 10 8 40 40 H 1.09000 * 110.36192 * 207.00416 * 14 12 11 41 41 H 1.08994 * 110.36783 * 329.21045 * 14 12 11 42 42 H 1.08997 * 110.42000 * 241.06594 * 15 14 12 43 43 H 1.09002 * 110.20766 * 118.81833 * 15 14 12 44 44 H 1.08997 * 109.75004 * 107.62660 * 18 10 8 45 45 H 1.08997 * 109.74556 * 346.89504 * 18 10 8 46 46 H 0.97002 * 120.00156 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0006 5 6 4.9210 1.3003 0.0014 6 8 4.6498 2.7033 0.0009 7 6 5.8213 3.5216 0.0021 8 6 5.4194 4.9740 0.0008 9 8 4.2454 5.2784 -0.0006 10 7 6.3646 5.9348 0.0012 11 6 7.7936 5.5832 0.0023 12 6 8.4998 6.4393 -1.0925 13 1 9.5627 6.2127 -1.1769 14 6 7.7422 6.2493 -2.4260 15 6 6.6426 7.3235 -2.4141 16 6 6.8293 8.0705 -1.0741 17 1 6.5795 9.1284 -1.1544 18 6 5.9898 7.3579 0.0004 19 7 8.2557 7.8561 -0.7291 20 6 9.1422 8.7577 -0.2037 21 1 8.7831 9.5822 0.3944 22 6 10.5023 8.6121 -0.4396 23 7 11.3725 9.2649 0.3013 24 14 11.0977 7.4894 -1.8088 25 1 11.3227 6.1250 -1.2675 26 1 10.0741 7.4332 -2.8831 27 1 12.3697 8.0175 -2.3641 28 7 3.4765 -0.7562 -0.0049 29 8 2.3096 -1.0735 0.0004 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 2.0344 2.1271 -0.0007 34 1 5.4949 1.0411 -0.8884 35 1 5.4941 1.0408 0.8915 36 1 6.4145 3.3084 -0.8872 37 1 6.4124 3.3086 0.8928 38 1 8.2248 5.7973 0.9802 39 1 7.9127 4.5249 -0.2298 40 1 8.4140 6.4074 -3.2697 41 1 7.3025 5.2531 -2.4738 42 1 5.6572 6.8595 -2.4552 43 1 6.7757 8.0079 -3.2520 44 1 6.1956 7.7936 0.9781 45 1 4.9299 7.4594 -0.2330 46 1 12.3229 9.1628 0.1367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713708701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:00 Heat of formation + Delta-G solvation = 36.350757 kcal Electronic energy + Delta-G solvation = -29396.237845 eV Core-core repulsion = 25291.360398 eV Total energy + Delta-G solvation = -4104.877447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.16847 -40.41790 -38.69504 -37.51103 -34.48206 -34.07359 -33.60849 -32.54993 -31.23764 -30.04271 -29.11496 -28.05958 -27.12847 -25.87470 -24.22110 -23.52815 -23.12795 -20.79039 -20.45740 -19.92706 -18.68843 -17.96476 -17.80676 -17.22750 -16.77550 -16.62813 -16.10826 -16.00877 -15.29196 -14.98859 -14.82997 -14.09211 -13.96260 -13.89704 -13.63742 -13.59517 -13.46168 -13.16718 -12.97650 -12.82608 -12.65324 -12.42526 -12.12194 -12.07259 -11.91626 -11.42581 -11.38727 -11.16708 -10.89557 -10.65106 -10.58127 -10.37000 -10.00721 -9.93950 -9.88214 -9.55856 -9.53936 -9.48250 -8.86668 -8.38963 -7.13851 -6.06914 -3.45360 1.20087 1.97730 2.58511 2.75933 2.86477 3.15324 3.35142 3.37189 3.50021 4.11918 4.35319 4.38351 4.59883 4.63289 4.75539 4.85961 4.91937 4.95676 5.02918 5.07367 5.08772 5.12692 5.15090 5.22283 5.32048 5.41905 5.43864 5.48013 5.50478 5.54149 5.77600 5.86966 5.91312 6.07667 6.11236 6.19502 6.26342 6.31148 6.33294 6.56945 6.66470 6.67864 6.90578 7.54052 7.66478 7.98760 8.20736 8.35781 8.65689 9.52147 10.09201 11.09125 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.002472 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.307154 B =11324.102239 C =11797.261664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.041 4.041 3 C -0.204 4.204 4 C 0.020 3.980 5 C 0.142 3.858 6 O -0.356 6.356 7 C 0.047 3.953 8 C 0.514 3.486 9 O -0.535 6.535 10 N -0.590 5.590 11 C 0.092 3.908 12 C 0.121 3.879 13 H 0.085 0.915 14 C -0.129 4.129 15 C -0.126 4.126 16 C 0.137 3.863 17 H 0.089 0.911 18 C 0.106 3.894 19 N -0.596 5.596 20 C -0.238 4.238 21 H 0.093 0.907 22 C 0.025 3.975 23 N -0.908 5.908 24 Si 0.880 3.120 25 H -0.286 1.286 26 H -0.262 1.262 27 H -0.302 1.302 28 N -0.363 5.363 29 O 0.100 5.900 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.178 0.822 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.166 -16.683 -2.073 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.104 4.104 3 C -0.225 4.225 4 C -0.139 4.139 5 C 0.065 3.935 6 O -0.274 6.274 7 C -0.033 4.033 8 C 0.300 3.700 9 O -0.412 6.412 10 N -0.324 5.324 11 C -0.033 4.033 12 C 0.014 3.986 13 H 0.102 0.898 14 C -0.168 4.168 15 C -0.165 4.165 16 C 0.029 3.971 17 H 0.107 0.893 18 C -0.017 4.017 19 N -0.319 5.319 20 C -0.365 4.365 21 H 0.110 0.890 22 C -0.174 4.174 23 N -0.551 5.551 24 Si 0.712 3.288 25 H -0.215 1.215 26 H -0.187 1.187 27 H -0.231 1.231 28 N -0.068 5.068 29 O 0.032 5.968 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.196 0.804 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.833 -17.270 -1.978 23.513 hybrid contribution 0.735 0.009 -0.704 1.018 sum -15.098 -17.262 -2.683 23.089 Atomic orbital electron populations 1.20331 0.83834 1.04674 1.04143 1.24554 0.96467 0.85966 1.03444 1.22468 0.90654 1.01508 1.07869 1.23119 0.97182 0.90091 1.03461 1.20315 0.90384 0.80735 1.02109 1.87934 1.29428 1.14422 1.95576 1.22307 0.88217 0.89976 1.02817 1.19947 0.85920 0.86583 0.77503 1.90679 1.17549 1.82990 1.49975 1.47960 1.06197 1.06459 1.71772 1.22928 0.80251 0.98227 1.01866 1.22617 0.97495 0.86765 0.91755 0.89772 1.22477 0.97878 0.98116 0.98310 1.22378 0.97770 0.97747 0.98572 1.22048 0.86039 0.97828 0.91182 0.89287 1.22358 0.99560 0.79125 1.00706 1.45480 1.07160 1.05564 1.73647 1.18627 0.86187 1.06835 1.24889 0.88985 1.25177 0.95829 0.98199 0.98209 1.69760 1.01643 1.44715 1.38995 0.86929 0.77844 0.79341 0.84693 1.21498 1.18678 1.23059 1.73778 0.97366 1.15313 1.20353 1.84798 1.11039 1.33194 1.67756 0.89399 0.89897 0.88873 0.80436 0.90680 0.90644 0.90018 0.89984 0.90365 0.91399 0.91761 0.92519 0.92129 0.92060 0.91296 0.89888 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.45 36.01 0.38 0.03 16 2 C -0.04 -0.37 7.49 -35.30 -0.26 -0.64 16 3 C -0.20 -2.24 10.45 -39.38 -0.41 -2.65 16 4 C 0.02 0.24 7.28 -82.10 -0.60 -0.36 16 5 C 0.14 1.51 6.56 36.00 0.24 1.75 16 6 O -0.36 -4.66 9.37 -55.14 -0.52 -5.18 16 7 C 0.05 0.56 4.80 36.00 0.17 0.73 16 8 C 0.51 8.10 7.78 -10.99 -0.09 8.01 16 9 O -0.53 -10.17 15.97 -14.35 -0.23 -10.40 16 10 N -0.59 -9.43 2.29 -170.28 -0.39 -9.82 16 11 C 0.09 1.46 5.91 -2.14 -0.01 1.45 16 12 C 0.12 2.30 2.93 -64.60 -0.19 2.11 16 13 H 0.08 1.75 3.16 -51.93 -0.16 1.58 16 14 C -0.13 -2.16 5.96 -25.54 -0.15 -2.31 16 15 C -0.13 -2.07 6.18 -25.54 -0.16 -2.22 16 16 C 0.14 2.48 4.27 -65.68 -0.28 2.20 16 17 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 18 C 0.11 1.79 5.93 -3.23 -0.02 1.77 16 19 N -0.60 -12.91 2.48 -151.45 -0.38 -13.29 16 20 C -0.24 -6.22 10.76 -15.06 -0.16 -6.38 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 22 C 0.03 0.69 5.49 -17.43 -0.10 0.59 16 23 N -0.91 -26.63 13.97 55.49 0.78 -25.86 16 24 Si 0.88 20.77 24.67 -169.99 -4.19 16.58 16 25 H -0.29 -6.46 6.68 56.52 0.38 -6.09 16 26 H -0.26 -5.90 5.35 56.52 0.30 -5.60 16 27 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 28 N -0.36 -4.53 12.07 33.42 0.40 -4.12 16 29 O 0.10 1.10 11.20 17.19 0.19 1.29 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.18 1.94 8.05 -52.49 -0.42 1.52 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.81 7.59 -51.92 -0.39 0.42 16 37 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 0.83 6.09 -51.93 -0.32 0.52 16 40 H 0.06 1.12 6.83 -51.93 -0.35 0.76 16 41 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 42 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.37 7.11 -51.93 -0.37 1.00 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -32.73 365.65 -7.21 -39.94 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.74 Total: 1.29 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.64 Total: 4.07 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.41 Total: -53.10 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.55 Total: -14.29 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.19 Total: 16.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.73 -7.21 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713708701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.291 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds