Wall clock time and date at job start Tue Mar 31 2020 18:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35456 * 126.77132 * 2 1 4 4 C 1.41379 * 103.98210 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.79938 * 180.02562 * 4 3 2 6 6 O 1.42900 * 109.47248 * 359.97438 * 5 4 3 7 7 C 1.42898 * 113.99814 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47172 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00036 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00202 * 180.02562 * 8 7 6 11 11 C 1.47162 * 120.71137 * 0.02649 * 10 8 7 12 12 C 1.55886 * 107.94965 * 132.40809 * 11 10 8 13 13 H 1.09000 * 112.45425 * 181.84303 * 12 11 10 14 14 C 1.54542 * 108.44394 * 307.13427 * 12 11 10 15 15 C 1.53734 * 104.95434 * 88.28879 * 14 12 11 16 16 C 1.54548 * 104.95405 * 359.97438 * 15 14 12 17 17 H 1.08994 * 112.18075 * 146.28519 * 16 15 14 18 18 C 1.47169 * 120.70999 * 180.02562 * 10 8 7 19 19 N 1.48312 * 104.35730 * 24.57736 * 16 15 14 20 20 C 1.36931 * 128.07653 * 139.08244 * 19 16 15 21 21 H 1.08002 * 119.99690 * 26.59016 * 20 19 16 22 22 C 1.38807 * 120.00240 * 206.58103 * 20 19 16 23 23 N 1.31620 * 120.00424 * 196.08287 * 22 20 19 24 24 Si 1.86799 * 119.99929 * 16.08473 * 22 20 19 25 25 H 1.48500 * 109.47182 * 268.86047 * 24 22 20 26 26 H 1.48504 * 109.46957 * 28.85544 * 24 22 20 27 27 H 1.48501 * 109.47633 * 148.85745 * 24 22 20 28 28 N 1.30175 * 106.39861 * 0.26806 * 4 3 2 29 29 O 1.20927 * 111.60165 * 359.53209 * 28 4 3 30 30 H 1.08995 * 109.47144 * 90.00136 * 1 2 3 31 31 H 1.08995 * 109.46707 * 209.99663 * 1 2 3 32 32 H 1.08997 * 109.47164 * 329.99296 * 1 2 3 33 33 H 1.07997 * 128.00940 * 359.95043 * 3 2 1 34 34 H 1.09005 * 109.46890 * 240.00053 * 5 4 3 35 35 H 1.08996 * 109.47364 * 120.00938 * 5 4 3 36 36 H 1.09009 * 109.47243 * 60.00552 * 7 6 5 37 37 H 1.08996 * 109.47449 * 300.00432 * 7 6 5 38 38 H 1.08999 * 109.74893 * 252.36705 * 11 10 8 39 39 H 1.09001 * 109.74882 * 13.09873 * 11 10 8 40 40 H 1.09000 * 110.36192 * 207.00416 * 14 12 11 41 41 H 1.08994 * 110.36783 * 329.21045 * 14 12 11 42 42 H 1.08997 * 110.42000 * 241.06594 * 15 14 12 43 43 H 1.09002 * 110.20766 * 118.81833 * 15 14 12 44 44 H 1.08997 * 109.75004 * 107.62660 * 18 10 8 45 45 H 1.08997 * 109.74556 * 346.89504 * 18 10 8 46 46 H 0.97002 * 120.00156 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5374 0.0006 5 6 4.9210 1.3003 0.0014 6 8 4.6498 2.7033 0.0009 7 6 5.8213 3.5216 0.0021 8 6 5.4194 4.9740 0.0008 9 8 4.2454 5.2784 -0.0006 10 7 6.3646 5.9348 0.0012 11 6 7.7936 5.5832 0.0023 12 6 8.4998 6.4393 -1.0925 13 1 9.5627 6.2127 -1.1769 14 6 7.7422 6.2493 -2.4260 15 6 6.6426 7.3235 -2.4141 16 6 6.8293 8.0705 -1.0741 17 1 6.5795 9.1284 -1.1544 18 6 5.9898 7.3579 0.0004 19 7 8.2557 7.8561 -0.7291 20 6 9.1422 8.7577 -0.2037 21 1 8.7831 9.5822 0.3944 22 6 10.5023 8.6121 -0.4396 23 7 11.3725 9.2649 0.3013 24 14 11.0977 7.4894 -1.8088 25 1 11.3227 6.1250 -1.2675 26 1 10.0741 7.4332 -2.8831 27 1 12.3697 8.0175 -2.3641 28 7 3.4765 -0.7562 -0.0049 29 8 2.3096 -1.0735 0.0004 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 2.0344 2.1271 -0.0007 34 1 5.4949 1.0411 -0.8884 35 1 5.4941 1.0408 0.8915 36 1 6.4145 3.3084 -0.8872 37 1 6.4124 3.3086 0.8928 38 1 8.2248 5.7973 0.9802 39 1 7.9127 4.5249 -0.2298 40 1 8.4140 6.4074 -3.2697 41 1 7.3025 5.2531 -2.4738 42 1 5.6572 6.8595 -2.4552 43 1 6.7757 8.0079 -3.2520 44 1 6.1956 7.7936 0.9781 45 1 4.9299 7.4594 -0.2330 46 1 12.3229 9.1628 0.1367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713708701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:59 Heat of formation + Delta-G solvation = 15.739693 kcal Electronic energy + Delta-G solvation = -29397.131608 eV Core-core repulsion = 25291.360398 eV Total energy + Delta-G solvation = -4105.771210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.96748 -41.74109 -39.86744 -38.61428 -35.55491 -35.28018 -34.37430 -34.27129 -32.61495 -31.75908 -30.11462 -28.62514 -28.18869 -27.16671 -25.54033 -25.23427 -23.94741 -22.05786 -21.53413 -21.14061 -20.20567 -18.87583 -18.77449 -18.38067 -18.10493 -17.66878 -17.33043 -17.28493 -16.54679 -16.35728 -15.73407 -15.29030 -15.25512 -15.13028 -14.85867 -14.72662 -14.46963 -14.16084 -14.03070 -13.97082 -13.75987 -13.58723 -13.31728 -13.23594 -13.02750 -12.87774 -12.77849 -12.49676 -12.19918 -12.15634 -11.92113 -11.59384 -11.44323 -11.41754 -11.24110 -10.83109 -10.67452 -10.67102 -10.26958 -9.86643 -8.90012 -8.14783 -5.49041 0.45222 1.17516 1.28049 1.44054 1.52085 1.57051 1.58384 2.17126 2.42667 2.47160 3.03302 3.19907 3.30356 3.52829 3.69223 3.80582 3.91319 4.02995 4.06008 4.08168 4.12157 4.17126 4.23408 4.27092 4.32303 4.42008 4.43521 4.48767 4.54019 4.69229 4.73157 4.73966 4.83988 4.89442 4.90107 4.97626 4.99171 5.00623 5.22478 5.24291 5.33961 5.48663 5.72796 5.88704 6.14561 6.44605 6.71395 7.13708 7.20698 7.50185 8.18552 9.05470 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.002472 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.307154 B =11324.102239 C =11797.261664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.024 4.024 3 C -0.232 4.232 4 C 0.006 3.994 5 C 0.142 3.858 6 O -0.379 6.379 7 C 0.048 3.952 8 C 0.514 3.486 9 O -0.571 6.571 10 N -0.590 5.590 11 C 0.099 3.901 12 C 0.109 3.891 13 H 0.071 0.929 14 C -0.124 4.124 15 C -0.117 4.117 16 C 0.132 3.868 17 H 0.082 0.918 18 C 0.114 3.886 19 N -0.616 5.616 20 C -0.221 4.221 21 H 0.053 0.947 22 C -0.038 4.038 23 N -0.962 5.962 24 Si 0.945 3.055 25 H -0.266 1.266 26 H -0.243 1.243 27 H -0.320 1.320 28 N -0.386 5.386 29 O 0.090 5.910 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.540 -19.877 -3.560 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.253 4.253 4 C -0.151 4.151 5 C 0.065 3.935 6 O -0.298 6.298 7 C -0.031 4.031 8 C 0.303 3.697 9 O -0.451 6.451 10 N -0.323 5.323 11 C -0.025 4.025 12 C 0.003 3.997 13 H 0.088 0.912 14 C -0.162 4.162 15 C -0.156 4.156 16 C 0.025 3.975 17 H 0.100 0.900 18 C -0.010 4.010 19 N -0.339 5.339 20 C -0.350 4.350 21 H 0.071 0.929 22 C -0.232 4.232 23 N -0.609 5.609 24 Si 0.775 3.225 25 H -0.193 1.193 26 H -0.167 1.167 27 H -0.250 1.250 28 N -0.093 5.093 29 O 0.025 5.975 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.191 0.809 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.135 0.865 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.264 -20.520 -3.479 27.041 hybrid contribution 0.977 1.054 -0.159 1.445 sum -16.287 -19.466 -3.637 25.640 Atomic orbital electron populations 1.20585 0.80727 1.06097 1.05598 1.25247 0.97978 0.84878 1.00651 1.22553 0.90992 1.01833 1.09964 1.23493 0.98244 0.90249 1.03149 1.20472 0.90014 0.79343 1.03702 1.87901 1.30335 1.15648 1.95884 1.22387 0.88262 0.86939 1.05499 1.20625 0.85093 0.88024 0.76002 1.90669 1.19142 1.83805 1.51476 1.47961 1.06513 1.06010 1.71843 1.22847 0.79429 1.00294 0.99934 1.22836 0.97540 0.85273 0.94073 0.91173 1.22474 0.97463 0.99807 0.96497 1.22300 0.98550 0.97667 0.97042 1.22182 0.84187 0.98253 0.92847 0.89981 1.22102 0.99451 0.80149 0.99304 1.45501 1.07769 1.06683 1.73932 1.18436 0.86982 1.06287 1.23262 0.92944 1.25838 0.95988 1.00756 1.00612 1.69920 1.01729 1.47931 1.41273 0.85888 0.76618 0.78156 0.81840 1.19336 1.16722 1.24985 1.73762 0.98120 1.15627 1.21836 1.84762 1.11006 1.33827 1.67864 0.87732 0.88187 0.87700 0.80871 0.88853 0.89074 0.86871 0.87406 0.91903 0.86544 0.92050 0.89187 0.90782 0.91780 0.93047 0.89394 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 71.24 0.74 0.24 16 2 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.23 -4.84 10.45 22.40 0.23 -4.60 16 4 C 0.01 0.14 7.28 43.58 0.32 0.46 16 5 C 0.14 2.59 6.56 71.24 0.47 3.06 16 6 O -0.38 -8.78 9.37 -129.94 -1.22 -10.00 16 7 C 0.05 0.94 4.80 71.23 0.34 1.28 16 8 C 0.51 14.59 7.78 87.66 0.68 15.28 16 9 O -0.57 -20.68 15.97 16.00 0.26 -20.43 16 10 N -0.59 -17.29 2.29 -811.04 -1.86 -19.15 16 11 C 0.10 2.80 5.91 87.25 0.52 3.32 16 12 C 0.11 3.83 2.93 46.17 0.14 3.96 16 13 H 0.07 2.69 3.16 -2.39 -0.01 2.68 16 14 C -0.12 -3.62 5.96 31.37 0.19 -3.44 16 15 C -0.12 -3.50 6.18 31.37 0.19 -3.31 16 16 C 0.13 4.68 4.27 45.46 0.19 4.87 16 17 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 18 C 0.11 3.76 5.93 86.54 0.51 4.27 16 19 N -0.62 -26.33 2.48 -633.06 -1.57 -27.90 16 20 C -0.22 -11.87 10.76 84.03 0.90 -10.96 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 22 C -0.04 -2.09 5.49 84.86 0.47 -1.62 16 23 N -0.96 -58.67 13.97 21.65 0.30 -58.36 16 24 Si 0.95 42.92 24.67 68.60 1.69 44.61 16 25 H -0.27 -11.08 6.68 99.48 0.66 -10.41 16 26 H -0.24 -10.14 5.35 99.48 0.53 -9.61 16 27 H -0.32 -15.36 7.11 99.48 0.71 -14.65 16 28 N -0.39 -9.14 12.07 -49.56 -0.60 -9.73 16 29 O 0.09 1.88 11.20 71.68 0.80 2.68 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.17 3.68 8.05 -2.91 -0.02 3.66 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.54 7.59 -2.38 -0.02 1.52 16 37 H 0.11 1.59 8.06 -2.39 -0.02 1.57 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.12 2.18 6.09 -2.39 -0.01 2.16 16 40 H 0.06 1.86 6.83 -2.39 -0.02 1.84 16 41 H 0.09 2.06 7.88 -2.39 -0.02 2.04 16 42 H 0.07 2.06 7.86 -2.39 -0.02 2.04 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.09 2.82 7.11 -2.39 -0.02 2.80 16 46 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.58 365.65 4.67 -69.91 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.78 Total: 15.78 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.08 Total: 12.60 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.72 Total: -115.15 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.16 Total: -27.74 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.69 Total: 44.61 kcal Total: -74.58 4.67 -69.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713708701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.646 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds