Wall clock time and date at job start Tue Mar 31 2020 19:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35131 * 126.44016 * 2 1 4 4 O 1.33926 * 108.76433 * 180.02562 * 3 2 1 5 5 C 1.34915 * 109.38710 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98564 * 179.97438 * 5 4 3 7 7 O 1.21692 * 119.99376 * 180.02562 * 6 5 4 8 8 N 1.34768 * 120.00155 * 0.02562 * 6 5 4 9 9 C 1.47025 * 125.65180 * 359.95759 * 8 6 5 10 10 C 1.54368 * 107.29126 * 178.94492 * 9 8 6 11 11 C 1.55159 * 102.91957 * 337.86062 * 10 9 8 12 12 H 1.09005 * 111.00302 * 277.36269 * 11 10 9 13 13 C 1.53000 * 111.00334 * 153.54749 * 11 10 9 14 14 N 1.46895 * 109.47239 * 178.18106 * 13 11 10 15 15 C 1.46896 * 111.00306 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47452 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99879 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99968 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99700 * 359.71718 * 19 18 16 21 21 C 1.38942 * 119.99884 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00042 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46819 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.47158 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47620 * 300.00141 * 23 21 19 27 27 C 1.47428 * 125.64997 * 180.02562 * 8 6 5 28 28 C 1.36539 * 108.02300 * 0.22966 * 5 4 3 29 29 H 1.09007 * 109.47096 * 89.97736 * 1 2 3 30 30 H 1.08996 * 109.46795 * 209.97730 * 1 2 3 31 31 H 1.08995 * 109.47296 * 329.97981 * 1 2 3 32 32 H 1.08005 * 125.61531 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.88418 * 298.39923 * 9 8 6 34 34 H 1.09001 * 109.88286 * 59.40183 * 9 8 6 35 35 H 1.09002 * 110.75560 * 219.49845 * 10 9 8 36 36 H 1.08994 * 110.70465 * 96.20689 * 10 9 8 37 37 H 1.09004 * 109.46929 * 58.17875 * 13 11 10 38 38 H 1.09002 * 109.47089 * 298.18114 * 13 11 10 39 39 H 1.00900 * 111.00389 * 303.95792 * 14 13 11 40 40 H 1.09000 * 109.47017 * 60.00110 * 15 14 13 41 41 H 1.08996 * 109.47227 * 300.00430 * 15 14 13 42 42 H 0.96999 * 120.00047 * 359.97438 * 18 16 15 43 43 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.36632 * 85.24832 * 27 8 6 45 45 H 1.09000 * 110.45389 * 322.97815 * 27 8 6 46 46 H 1.08004 * 126.64651 * 179.77285 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8380 -1.4940 -0.0014 7 8 4.7471 -2.7076 -0.0015 8 7 6.0521 -0.9091 -0.0021 9 6 6.3056 0.5391 -0.0029 10 6 7.8363 0.7370 0.0236 11 6 8.3496 -0.6056 0.6077 12 1 8.2908 -0.6062 1.6961 13 6 9.7762 -0.8981 0.1383 14 7 10.2437 -2.1519 0.7443 15 6 11.6129 -2.4658 0.3148 16 6 12.0569 -3.7559 0.9547 17 8 11.3063 -4.3552 1.6953 18 7 13.2880 -4.2437 0.7040 19 6 13.6917 -5.4178 1.2858 20 1 13.0248 -5.9493 1.9485 21 6 14.9607 -5.9210 1.0269 22 7 15.7738 -5.2719 0.2241 23 14 15.5110 -7.5201 1.8201 24 1 14.5990 -8.6170 1.4071 25 1 16.8950 -7.8377 1.3854 26 1 15.4763 -7.3775 3.2978 27 6 7.3462 -1.6154 -0.0037 28 6 2.3408 -1.1291 -0.0049 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5141 32 1 1.9770 2.1146 0.0004 33 1 5.8889 0.9880 -0.9046 34 1 5.8559 0.9947 0.8794 35 1 8.1070 1.5690 0.6738 36 1 8.2223 0.8921 -0.9838 37 1 10.4325 -0.0818 0.4401 38 1 9.7893 -0.9923 -0.9475 39 1 10.1800 -2.1131 1.7505 40 1 12.2823 -1.6605 0.6175 41 1 11.6384 -2.5710 -0.7698 42 1 13.8882 -3.7646 0.1114 43 1 16.6596 -5.6234 0.0431 44 1 7.6377 -1.8708 -1.0224 45 1 7.2904 -2.5140 0.6108 46 1 2.0267 -2.1625 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714360097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:26 Heat of formation + Delta-G solvation = -54.470652 kcal Electronic energy + Delta-G solvation = -27610.009943 eV Core-core repulsion = 23501.194184 eV Total energy + Delta-G solvation = -4108.815759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.05601 -40.09899 -38.37263 -37.82170 -35.42824 -34.58844 -33.83983 -32.20612 -31.18984 -30.79365 -29.57015 -27.93606 -26.99133 -25.37137 -24.11490 -22.82120 -22.31731 -21.37426 -20.65195 -19.55039 -19.16733 -17.89375 -17.73407 -16.93985 -16.79738 -16.40482 -16.02488 -15.51146 -15.47449 -14.67632 -14.47221 -14.37609 -13.99507 -13.87443 -13.69176 -13.58885 -13.48772 -13.40287 -13.16039 -12.93464 -12.84217 -12.79302 -12.26839 -12.08391 -11.76021 -11.63394 -11.53201 -11.22235 -11.09227 -10.96332 -10.87431 -10.45608 -10.42183 -10.19117 -10.07756 -9.47815 -9.07351 -8.78054 -8.44931 -8.05549 -7.93784 -6.39644 -3.80410 0.75600 1.93696 2.31282 2.81528 2.94249 3.22288 3.27629 3.32434 3.92347 3.96764 4.14222 4.28113 4.29510 4.38476 4.50989 4.56947 4.72950 4.90875 4.98586 5.12127 5.17630 5.18435 5.23595 5.25763 5.29054 5.37526 5.41956 5.47939 5.54704 5.58869 5.61747 5.63146 5.73600 5.82613 5.95122 5.98323 5.99823 6.03359 6.14590 6.28229 6.52865 7.17555 7.20775 7.57202 7.64472 7.81097 8.08396 8.63560 9.20087 9.56467 10.08166 10.78019 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.001711 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.447084 B =16358.722567 C =17169.179725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.193 4.193 3 C -0.016 4.016 4 O -0.159 6.159 5 C -0.068 4.068 6 C 0.612 3.388 7 O -0.515 6.515 8 N -0.612 5.612 9 C 0.103 3.897 10 C -0.126 4.126 11 C -0.097 4.097 12 H 0.087 0.913 13 C 0.070 3.930 14 N -0.670 5.670 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.120 3.880 28 C -0.120 4.120 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.208 0.792 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.350 0.650 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.929 20.264 -3.308 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.194 4.194 3 C -0.085 4.085 4 O -0.054 6.054 5 C -0.120 4.120 6 C 0.401 3.599 7 O -0.393 6.393 8 N -0.345 5.345 9 C -0.019 4.019 10 C -0.165 4.165 11 C -0.116 4.116 12 H 0.105 0.895 13 C -0.060 4.060 14 N -0.302 5.302 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.001 4.001 28 C -0.141 4.141 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.225 0.775 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.169 0.831 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -24.352 18.887 -3.347 30.999 hybrid contribution 1.082 0.260 0.426 1.191 sum -23.270 19.147 -2.921 30.276 Atomic orbital electron populations 1.20190 0.88606 1.02916 1.02368 1.20497 0.97737 0.92393 1.08774 1.24207 0.80170 1.00017 1.04144 1.84140 1.29036 1.21722 1.70549 1.22028 0.95976 0.80502 1.13457 1.16159 0.80243 0.86016 0.77527 1.90930 1.85337 1.12030 1.50978 1.48413 1.05747 1.08215 1.72122 1.22088 0.96739 0.80845 1.02274 1.22702 0.93323 0.97932 1.02513 1.22373 0.94459 0.93873 1.00921 0.89470 1.21900 0.93139 0.90843 1.00083 1.60054 1.22765 1.32491 1.14901 1.21658 0.89011 0.96529 1.00910 1.19816 0.83320 0.87856 0.86452 1.90532 1.53873 1.61519 1.40688 1.41855 1.12728 1.22489 1.42998 1.19666 0.98874 0.99094 1.25318 0.87969 1.25250 0.95847 0.99663 0.97135 1.69605 1.08709 1.39827 1.36249 0.85916 0.77466 0.81472 0.79351 1.19876 1.20994 1.19942 1.22319 0.79630 0.96103 1.02021 1.21861 0.90505 1.00678 1.01046 0.91232 0.91206 0.91444 0.77526 0.91075 0.91042 0.89700 0.90069 0.94794 0.90659 0.83076 0.93874 0.89587 0.77478 0.91856 0.90665 0.89018 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.39 36.01 0.37 -0.04 16 2 C -0.19 -1.47 6.14 -104.93 -0.64 -2.11 16 3 C -0.02 -0.10 12.00 29.63 0.36 0.25 16 4 O -0.16 -1.44 8.27 5.01 0.04 -1.40 16 5 C -0.07 -0.77 6.95 -36.80 -0.26 -1.02 16 6 C 0.61 8.42 7.82 -12.86 -0.10 8.31 16 7 O -0.52 -8.91 17.12 5.20 0.09 -8.82 16 8 N -0.61 -7.20 3.33 -172.02 -0.57 -7.77 16 9 C 0.10 0.86 5.55 -3.04 -0.02 0.84 16 10 C -0.13 -0.90 6.42 -24.87 -0.16 -1.06 16 11 C -0.10 -0.95 3.21 -88.46 -0.28 -1.23 16 12 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 13 C 0.07 0.77 5.13 -3.83 -0.02 0.76 16 14 N -0.67 -10.40 6.01 -115.07 -0.69 -11.09 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.44 7.82 -10.99 -0.09 10.36 16 17 O -0.58 -15.99 15.78 5.55 0.09 -15.91 16 18 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 20 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 23 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.12 1.49 6.27 -2.52 -0.02 1.47 16 28 C -0.12 -1.23 10.57 -39.40 -0.42 -1.64 16 29 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.21 0.50 8.06 -52.48 -0.42 0.08 16 33 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 34 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 39 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 44 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 45 H 0.09 1.38 8.04 -51.93 -0.42 0.96 16 46 H 0.16 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -34.68 389.92 -7.93 -42.61 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.86 Total: 10.96 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -1.54 Total: 7.65 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.60 Total: -57.25 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.22 Total: -26.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.68 -7.93 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714360097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.858 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds