Wall clock time and date at job start Tue Mar 31 2020 19:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35131 * 126.44016 * 2 1 4 4 O 1.33926 * 108.76433 * 180.02562 * 3 2 1 5 5 C 1.34915 * 109.38710 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98564 * 179.97438 * 5 4 3 7 7 O 1.21692 * 119.99376 * 180.02562 * 6 5 4 8 8 N 1.34768 * 120.00155 * 0.02562 * 6 5 4 9 9 C 1.47025 * 125.65180 * 359.95759 * 8 6 5 10 10 C 1.54368 * 107.29126 * 178.94492 * 9 8 6 11 11 C 1.55159 * 102.91957 * 337.86062 * 10 9 8 12 12 H 1.09005 * 111.00302 * 277.36269 * 11 10 9 13 13 C 1.53000 * 111.00334 * 153.54749 * 11 10 9 14 14 N 1.46895 * 109.47239 * 178.18106 * 13 11 10 15 15 C 1.46896 * 111.00306 * 179.97438 * 14 13 11 16 16 C 1.50696 * 109.47452 * 180.02562 * 15 14 13 17 17 O 1.21292 * 119.99879 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 15 14 19 19 C 1.37105 * 119.99968 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99700 * 359.71718 * 19 18 16 21 21 C 1.38942 * 119.99884 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00042 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46819 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.47158 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47620 * 300.00141 * 23 21 19 27 27 C 1.47428 * 125.64997 * 180.02562 * 8 6 5 28 28 C 1.36539 * 108.02300 * 0.22966 * 5 4 3 29 29 H 1.09007 * 109.47096 * 89.97736 * 1 2 3 30 30 H 1.08996 * 109.46795 * 209.97730 * 1 2 3 31 31 H 1.08995 * 109.47296 * 329.97981 * 1 2 3 32 32 H 1.08005 * 125.61531 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.88418 * 298.39923 * 9 8 6 34 34 H 1.09001 * 109.88286 * 59.40183 * 9 8 6 35 35 H 1.09002 * 110.75560 * 219.49845 * 10 9 8 36 36 H 1.08994 * 110.70465 * 96.20689 * 10 9 8 37 37 H 1.09004 * 109.46929 * 58.17875 * 13 11 10 38 38 H 1.09002 * 109.47089 * 298.18114 * 13 11 10 39 39 H 1.00900 * 111.00389 * 303.95792 * 14 13 11 40 40 H 1.09000 * 109.47017 * 60.00110 * 15 14 13 41 41 H 1.08996 * 109.47227 * 300.00430 * 15 14 13 42 42 H 0.96999 * 120.00047 * 359.97438 * 18 16 15 43 43 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.36632 * 85.24832 * 27 8 6 45 45 H 1.09000 * 110.45389 * 322.97815 * 27 8 6 46 46 H 1.08004 * 126.64651 * 179.77285 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8380 -1.4940 -0.0014 7 8 4.7471 -2.7076 -0.0015 8 7 6.0521 -0.9091 -0.0021 9 6 6.3056 0.5391 -0.0029 10 6 7.8363 0.7370 0.0236 11 6 8.3496 -0.6056 0.6077 12 1 8.2908 -0.6062 1.6961 13 6 9.7762 -0.8981 0.1383 14 7 10.2437 -2.1519 0.7443 15 6 11.6129 -2.4658 0.3148 16 6 12.0569 -3.7559 0.9547 17 8 11.3063 -4.3552 1.6953 18 7 13.2880 -4.2437 0.7040 19 6 13.6917 -5.4178 1.2858 20 1 13.0248 -5.9493 1.9485 21 6 14.9607 -5.9210 1.0269 22 7 15.7738 -5.2719 0.2241 23 14 15.5110 -7.5201 1.8201 24 1 14.5990 -8.6170 1.4071 25 1 16.8950 -7.8377 1.3854 26 1 15.4763 -7.3775 3.2978 27 6 7.3462 -1.6154 -0.0037 28 6 2.3408 -1.1291 -0.0049 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5141 32 1 1.9770 2.1146 0.0004 33 1 5.8889 0.9880 -0.9046 34 1 5.8559 0.9947 0.8794 35 1 8.1070 1.5690 0.6738 36 1 8.2223 0.8921 -0.9838 37 1 10.4325 -0.0818 0.4401 38 1 9.7893 -0.9923 -0.9475 39 1 10.1800 -2.1131 1.7505 40 1 12.2823 -1.6605 0.6175 41 1 11.6384 -2.5710 -0.7698 42 1 13.8882 -3.7646 0.1114 43 1 16.6596 -5.6234 0.0431 44 1 7.6377 -1.8708 -1.0224 45 1 7.2904 -2.5140 0.6108 46 1 2.0267 -2.1625 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714360097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:25 Heat of formation + Delta-G solvation = -80.476280 kcal Electronic energy + Delta-G solvation = -27611.137631 eV Core-core repulsion = 23501.194184 eV Total energy + Delta-G solvation = -4109.943447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.73094 -41.03322 -40.13834 -38.92296 -36.67822 -35.82964 -35.18619 -33.37306 -33.09547 -31.51460 -30.44818 -28.80886 -28.01161 -26.74212 -25.51076 -23.85221 -23.07689 -22.05903 -21.58774 -20.95429 -20.32047 -19.88890 -18.53295 -17.94736 -17.62872 -17.53186 -17.13858 -16.90838 -16.42628 -16.34835 -15.96889 -15.63126 -15.25375 -15.06965 -14.59477 -14.52733 -14.25545 -14.12947 -14.03224 -13.96081 -13.84498 -13.56136 -13.52688 -13.40425 -13.08714 -12.82266 -12.64010 -12.56505 -12.44056 -12.14851 -12.06631 -11.95028 -11.61513 -11.51778 -11.50257 -10.77196 -10.34443 -10.01480 -9.92342 -9.51752 -9.27036 -8.46801 -5.95550 -0.03251 1.31102 1.39341 1.41172 1.51974 1.52157 2.00074 2.04033 2.06233 2.29171 2.90848 3.20561 3.34513 3.54538 3.58573 3.77054 3.79653 3.90543 4.03960 4.26154 4.29934 4.31585 4.37616 4.44818 4.54676 4.60563 4.62859 4.64528 4.73379 4.80380 4.87093 4.88010 4.89034 4.98167 5.01903 5.07744 5.09687 5.18068 5.35945 5.40427 5.50133 5.84826 5.89814 6.12263 6.28921 6.42801 6.60689 6.82275 7.12789 7.56743 8.12818 8.70260 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.001711 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.447084 B =16358.722567 C =17169.179725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C 0.009 3.991 4 O -0.158 6.158 5 C -0.097 4.097 6 C 0.603 3.397 7 O -0.572 6.572 8 N -0.611 5.611 9 C 0.100 3.900 10 C -0.111 4.111 11 C -0.088 4.088 12 H 0.083 0.917 13 C 0.074 3.926 14 N -0.690 5.690 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.268 1.268 26 H -0.272 1.272 27 C 0.118 3.882 28 C -0.128 4.128 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.257 0.743 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.344 0.656 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.313 23.724 -3.852 34.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.208 4.208 3 C -0.061 4.061 4 O -0.053 6.053 5 C -0.149 4.149 6 C 0.393 3.607 7 O -0.454 6.454 8 N -0.343 5.343 9 C -0.021 4.021 10 C -0.149 4.149 11 C -0.108 4.108 12 H 0.102 0.898 13 C -0.055 4.055 14 N -0.323 5.323 15 C -0.065 4.065 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.193 1.193 26 H -0.197 1.197 27 C -0.004 4.004 28 C -0.149 4.149 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.272 0.728 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.162 0.838 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -24.711 22.418 -3.917 33.594 hybrid contribution 1.080 -0.736 0.585 1.432 sum -23.631 21.681 -3.332 32.243 Atomic orbital electron populations 1.20260 0.86611 1.03857 1.03145 1.20831 0.99154 0.91598 1.09235 1.25182 0.78808 1.01652 1.00412 1.84123 1.30453 1.20222 1.70552 1.21534 0.95059 0.81558 1.16753 1.16564 0.81455 0.85804 0.76875 1.90876 1.86328 1.14357 1.53803 1.48540 1.04945 1.09864 1.70909 1.22341 0.98002 0.78484 1.03321 1.22718 0.91791 0.96671 1.03757 1.22293 0.93084 0.94745 1.00652 0.89830 1.21986 0.93743 0.89495 1.00234 1.60046 1.21762 1.35722 1.14749 1.21508 0.90450 0.93398 1.01107 1.21007 0.82118 0.89336 0.85286 1.90501 1.54868 1.63370 1.42519 1.41921 1.13629 1.22160 1.43317 1.19630 0.99555 1.00813 1.26689 0.90543 1.26006 0.95298 1.02517 0.97263 1.69660 1.08996 1.40882 1.36407 0.85007 0.77528 0.77438 0.78457 1.19998 1.19274 1.19690 1.22253 0.81122 0.95913 1.01129 1.22077 0.91051 1.01379 1.00392 0.90486 0.91651 0.89178 0.72765 0.89795 0.90159 0.86981 0.88568 0.92204 0.89816 0.83787 0.91070 0.87804 0.76888 0.91267 0.91203 0.92956 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.39 71.24 0.74 0.12 16 2 C -0.21 -2.80 6.14 -20.06 -0.12 -2.92 16 3 C 0.01 0.09 12.00 67.10 0.81 0.89 16 4 O -0.16 -2.57 8.27 -5.00 -0.04 -2.61 16 5 C -0.10 -2.25 6.95 24.07 0.17 -2.09 16 6 C 0.60 17.75 7.82 86.44 0.68 18.42 16 7 O -0.57 -21.85 17.12 -4.32 -0.07 -21.92 16 8 N -0.61 -14.76 3.33 -816.38 -2.72 -17.47 16 9 C 0.10 1.46 5.55 86.74 0.48 1.95 16 10 C -0.11 -1.22 6.42 31.80 0.20 -1.01 16 11 C -0.09 -1.62 3.21 -9.39 -0.03 -1.65 16 12 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 13 C 0.07 1.47 5.13 86.30 0.44 1.91 16 14 N -0.69 -21.09 6.01 -517.96 -3.11 -24.20 16 15 C 0.07 2.26 6.17 85.56 0.53 2.79 16 16 C 0.43 21.01 7.82 87.66 0.69 21.70 16 17 O -0.63 -35.74 15.78 -3.07 -0.05 -35.79 16 18 N -0.57 -29.80 5.29 -306.99 -1.62 -31.42 16 19 C -0.34 -19.56 9.68 84.04 0.81 -18.74 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.59 5.50 84.92 0.47 -0.13 16 22 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 23 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.12 3.04 6.27 86.86 0.54 3.58 16 28 C -0.13 -2.69 10.57 22.39 0.24 -2.46 16 29 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.26 -0.17 8.06 -2.91 -0.02 -0.20 16 33 H 0.08 1.05 7.79 -2.38 -0.02 1.04 16 34 H 0.08 1.06 7.67 -2.39 -0.02 1.04 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 0.83 8.04 -2.39 -0.02 0.81 16 37 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 1.55 8.04 -2.39 -0.02 1.53 16 39 H 0.34 11.17 8.43 -89.69 -0.76 10.41 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 43 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 44 H 0.07 1.84 7.96 -2.39 -0.02 1.82 16 45 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 46 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -80.80 389.92 0.86 -79.94 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.47 Total: 34.99 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 6.64 Total: 22.38 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -7.17 Total: -122.71 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -0.16 Total: -60.32 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -80.80 0.86 -79.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714360097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.538 kcal (2) G-P(sol) polarization free energy of solvation -80.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds